RLG00000006595

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001606
Physical Location & Seq
Reverse (-)
8792543 .. 8793138
596 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006595

Sequence Viewer

Length: 486 bp
ATGGCAAGCTTAGCCCTGCTTATACTTTGTGTGGGTGAAGCGATCAGTGTTGGAGGCACTGTGATTCGTTCAATCTCGAAAGGGGGCACGGCCTATCTGGTGGCTATGCATTGGATTTTCCTTCCTGTTTGCTGCACTAGAGGTAGTGGTGCTCAGACTCCCAATCTGAGTGGTTGCCTTGGGACAACGCCGGGGAGCATGGATGCAAGGCCGGTGATGGGTTTTGGAGGATTGGTGGTGCGGCTAAGGTTGTCGGCGTGGCTATGGACGGGGTGTGTCAGCGTTCTGAGGATCTCAATCTTCTTCCAGCCGGTGATGGTGGCAATAAGCACGGCTTTAGTTCCTTTGGGTCACCATAGCAGGCAGTTAGGTATTGGTGTGGCTGTTGGTGGTAAGAACGGCGGAGATGGACGTGGTGGAGGCAGAACTCTATCTCGAGCTTTTAACATCGGTCCTGATCTGGTGGACACGGGCAGTGGAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

16.37

Weight (kDa)

9.95

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 241, 402
AclWI GGATC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 72
AjiI CACGTC 1 cut(s) 413
AluBI AGCT 2 cut(s) 9, 440
AluI AGCT 2 cut(s) 9, 440
Alw21I GWGCWC 1 cut(s) 154
AlwI GGATC 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 2 cut(s) 90, 209
ApeKI GCWGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 4 cut(s) 47, 226, 325, 344
AvaI CYCGRG 1 cut(s) 435
AvaII GGWCC 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 119
BccI CCATC 3 cut(s) 211, 310, 401
BceAI ACGGC 3 cut(s) 105, 348, 415
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 2 cut(s) 138, 484
BisI GCNGC 2 cut(s) 133, 242
BlpI GCTNAGC 1 cut(s) 10
BlsI GCNGC 2 cut(s) 134, 243
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 435
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 10
BpuMI CCSGG 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 178, 191
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 2 cut(s) 211, 310
Bse8I GATNNNNATC 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 178, 191
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 3 cut(s) 158, 167, 278
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 2 cut(s) 92, 211
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 3 cut(s) 191, 212, 311
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 2 cut(s) 92, 211
BsoBI CYCGRG 1 cut(s) 435
Bsp1286I GDGCHC 2 cut(s) 89, 154
Bsp143I GATC 3 cut(s) 42, 291, 457
Bsp1720I GCTNAGC 1 cut(s) 10
BspACI CCGC 2 cut(s) 241, 402
BspANI GGCC 2 cut(s) 92, 211
BspCNI CTCAG 3 cut(s) 159, 166, 279
BspPI GGATC 1 cut(s) 299
BsrFI RCCGGY 2 cut(s) 211, 310
BssAI RCCGGY 2 cut(s) 211, 310
BssECI CCNNGG 2 cut(s) 178, 191
BssMI GATC 3 cut(s) 42, 291, 457
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 7, 362
BstDEI CTNAG 5 cut(s) 10, 153, 167, 245, 287
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 3 cut(s) 45, 294, 460
BstMBI GATC 3 cut(s) 42, 291, 457
BstMWI GCNNNNNNNGC 2 cut(s) 11, 480
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 2 cut(s) 92, 211
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 3 cut(s) 52, 57, 481
Cac8I GCNNGC 2 cut(s) 7, 362
Cfr10I RCCGGY 2 cut(s) 211, 310
Cfr13I GGNCC 1 cut(s) 452
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 1 cut(s) 199
DdeI CTNAG 5 cut(s) 10, 153, 167, 245, 287
DpnI GATC 3 cut(s) 44, 293, 459
DpnII GATC 3 cut(s) 42, 291, 457
EciI GGCGGA 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 202
FaiI YATR 5 cut(s) 23, 107, 200, 265, 357
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 133, 242
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 133, 242
FspBI CTAG 2 cut(s) 138, 484
GluI GCNGC 2 cut(s) 133, 242
HaeIII GGCC 2 cut(s) 92, 211
HapII CCGG 3 cut(s) 191, 212, 311
Hin1II CATG 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 2 cut(s) 64, 157
HpaII CCGG 3 cut(s) 191, 212, 311
HphI GGTGA 4 cut(s) 47, 226, 325, 344
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 3 cut(s) 156, 168, 288
Hpy188III TCNNGA 3 cut(s) 76, 435, 455
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 3 cut(s) 109, 135, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 480
HpyF3I CTNAG 5 cut(s) 10, 153, 167, 245, 287
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 3 cut(s) 42, 291, 457
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 193
MaeI CTAG 2 cut(s) 138, 484
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 350
MalI GATC 3 cut(s) 44, 293, 459
MboI GATC 3 cut(s) 42, 291, 457
MboII GAAGA 2 cut(s) 292, 295
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 2 cut(s) 89, 154
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 6 cut(s) 47, 134, 221, 282, 413, 473
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 1 cut(s) 444
MspI CCGG 3 cut(s) 191, 212, 311
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 11, 480
NciI CCSGG 1 cut(s) 192
NdeII GATC 3 cut(s) 42, 291, 457
NlaIII CATG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 350
NsiI ATGCAT 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 435
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 134, 243
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PspEI GGTNACC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 452
PsuI RGATCY 1 cut(s) 291
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 2 cut(s) 133, 242
Sau3AI GATC 3 cut(s) 42, 291, 457
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 2 cut(s) 89, 154
SetI ASST 6 cut(s) 11, 145, 251, 373, 415, 442
SfaNI GCATC 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SsiI CCGC 2 cut(s) 241, 402
SspMI CTAG 2 cut(s) 138, 484
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 415
TaqI TCGA 2 cut(s) 77, 436
TaqII GACCGA 1 cut(s) 440
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 3 cut(s) 52, 64, 481
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 350
TspRI CASTG 3 cut(s) 52, 64, 481
VpaK11BI GGWCC 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 435
XspI CTAG 2 cut(s) 138, 484
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.