Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000480.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

167452 .. 168096

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000480.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgtcccaatggattcactccatcatctttactactgcactccacctttacctttgcttttccaacttcctcattacgtcagccataaccgaattcgacttcggaaccctcaccctcagcagcctcaagctcctctgcgacgcccacttgaacaatggcagcgtgcgtctcactcgcaaccttgccgtcgccaactccggcgcctgcagagtgctgtactcgaagcttgtccacttcaagaaaccctccactccgtttcaggctagcttctccacattcttcacgttctccgtcagcaatttgaacccctccccgatcagcggtgggctggattttatcatctcgtcggacgatgaggttgtcggagacgccgacgggttcttggggctccagagagtggaggacccgggttcgggtgccgggtcgagtttcgtggtggtggagttcaacacgctcatggacgtggagttcaaggacattaatagaaactacgtgggcctggatctcaactccatggtttcgtcacaggtcggtgatcttgtcactgcgaatattgatctcaagagcggggacctcgtgaattgctggatcgaattcggcggatcgatctgtggagagggagagagagaaaagcggaaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

214

Amino Acids

23.32

Weight (kDa)

5.0

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	200, 416
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccBSI	CCGCTC	1 cut(s)	567
AciI	CCGC	4 cut(s)	321, 567, 600, 634
AclWI	GGATC	3 cut(s)	510, 596, 610
AcsI	RAATTY	2 cut(s)	92, 593
AcyI	GRCGYC	3 cut(s)	141, 201, 369
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	4 cut(s)	320, 397, 412, 413
AgsI	TTSAA	5 cut(s)	151, 238, 304, 448, 472
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	498
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
AluBI	AGCT	3 cut(s)	130, 226, 267
AluI	AGCT	3 cut(s)	130, 226, 267
Alw26I	GTCTC	2 cut(s)	173, 360
AlwI	GGATC	3 cut(s)	510, 596, 610
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	2 cut(s)	120, 159
ApoI	RAATTY	2 cut(s)	92, 593
AseI	ATTAAT	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	403, 496, 571
AsuC2I	CCSGG	3 cut(s)	407, 408, 421
AsuHPI	GGTGA	2 cut(s)	103, 545
AsuNHI	GCTAGC	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	403, 571
BanI	GGYRCC	2 cut(s)	200, 416
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	575
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	132, 171
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	500
BcnI	CCSGG	3 cut(s)	407, 408, 421
BcoDI	GTCTC	2 cut(s)	173, 360
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	2 cut(s)	121, 160
BlsI	GCNGC	2 cut(s)	122, 161
Bme1390I	CCNGG	4 cut(s)	407, 408, 421, 500
Bme18I	GGWCC	2 cut(s)	403, 571
BmeT110I	CYCGRG	1 cut(s)	406
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	3 cut(s)	403, 496, 571
BmiI	GGNNCC	6 cut(s)	106, 202, 389, 405, 418, 572
BmrFI	CCNGG	4 cut(s)	407, 408, 421, 500
BmtI	GCTAGC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	374
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	2 cut(s)	110, 545
BpuMI	CCSGG	3 cut(s)	407, 408, 421
Bsa29I	ATCGAT	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	493
BsaHI	GRCGYC	3 cut(s)	141, 201, 369
BsaJI	CCNNGG	2 cut(s)	406, 513
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 397, 412, 413
BseBI	CCWGG	1 cut(s)	500
BseCI	ATCGAT	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	406, 513
BseLI	CCNNNNNNNGG	4 cut(s)	320, 397, 412, 413
BseMII	CTCAG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	132, 171
BsgI	GTGCAG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	2 cut(s)	200, 416
BshVI	ATCGAT	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	3 cut(s)	198, 407, 420
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	4 cut(s)	320, 397, 412, 413
BsmAI	GTCTC	2 cut(s)	173, 360
BsmBI	CGTCTC	2 cut(s)	173, 360
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	498
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	7 cut(s)	315, 502, 535, 556, 588, 602, 606
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	4 cut(s)	321, 567, 600, 634
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	605
BspLI	GGNNCC	6 cut(s)	106, 202, 389, 405, 418, 572
BspMAI	CTGCAG	1 cut(s)	209
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	510, 596, 610
BspT107I	GGYRCC	2 cut(s)	200, 416
BsrBI	CCGCTC	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	406, 513
BssMI	GATC	7 cut(s)	315, 502, 535, 556, 588, 602, 606
BssNI	GRCGYC	3 cut(s)	141, 201, 369
BssSI	CACGAG	1 cut(s)	575
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	575
Bst2UI	CCWGG	1 cut(s)	500
BstACI	GRCGYC	3 cut(s)	141, 201, 369
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	164, 205, 265
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	7 cut(s)	318, 505, 538, 559, 591, 605, 609
BstMAI	GTCTC	2 cut(s)	173, 360
BstMBI	GATC	7 cut(s)	315, 502, 535, 556, 588, 602, 606
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	4 cut(s)	405, 406, 419, 498
BstSFI	CTRYAG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	132, 171
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
Bsu15I	ATCGAT	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	498
BsuTUI	ATCGAT	1 cut(s)	605
BtgI	CCRYGG	1 cut(s)	513
BtrI	CACGTC	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	3 cut(s)	164, 205, 265
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	403, 496, 571
Cfr9I	CCCGGG	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	605
CseI	GACGC	3 cut(s)	149, 155, 377
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	457, 514
CviJI	RGCY	9 cut(s)	83, 123, 130, 226, 263, 267, 328, 388, 498
CviKI_1	RGCY	9 cut(s)	83, 123, 130, 226, 263, 267, 328, 388, 498
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	116
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	7 cut(s)	317, 504, 537, 558, 590, 604, 608
DpnII	GATC	7 cut(s)	315, 502, 535, 556, 588, 602, 606
EciI	GGCGGA	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	403, 571
Eco88I	CYCGRG	1 cut(s)	406
EcoO109I	RGGNCCY	2 cut(s)	403, 571
EcoRI	GAATTC	2 cut(s)	92, 593
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	390
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	2 cut(s)	173, 360
FaeI	CATG	2 cut(s)	460, 517
FaiI	YATR	3 cut(s)	86, 458, 515
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	2 cut(s)	456, 513
FauI	CCCGC	1 cut(s)	560
Fnu4HI	GCNGC	2 cut(s)	121, 160
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	121, 160
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	121, 160
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	3 cut(s)	198, 407, 420
HgaI	GACGC	3 cut(s)	149, 155, 377
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	3 cut(s)	141, 201, 369
Hin1II	CATG	2 cut(s)	460, 517
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	3 cut(s)	198, 407, 420
HphI	GGTGA	2 cut(s)	103, 545
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	104, 349, 365
Hpy188III	TCNNGA	4 cut(s)	238, 391, 562, 577
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	4 cut(s)	143, 191, 349, 377
HpyCH4IV	ACGT	4 cut(s)	77, 284, 462, 492
HpyCH4V	TGCA	2 cut(s)	38, 207
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	4 cut(s)	77, 284, 462, 492
Hsp92I	GRCGYC	3 cut(s)	141, 201, 369
Hsp92II	CATG	2 cut(s)	460, 517
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Kzo9I	GATC	7 cut(s)	315, 502, 535, 556, 588, 602, 606
LmnI	GCTCC	2 cut(s)	135, 393
Lsp1109I	GCAGC	2 cut(s)	132, 171
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	4 cut(s)	77, 284, 462, 492
MaeIII	GTNAC	2 cut(s)	522, 541
MalI	GATC	7 cut(s)	317, 504, 537, 558, 590, 604, 608
MbiI	CCGCTC	1 cut(s)	567
MboI	GATC	7 cut(s)	315, 502, 535, 556, 588, 602, 606
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	4 cut(s)	92, 298, 580, 593
Mly113I	GGCGCC	1 cut(s)	201
MmeI	TCCRAC	3 cut(s)	87, 327, 343
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	455, 461
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	3 cut(s)	198, 407, 420
MspR9I	CCNGG	4 cut(s)	407, 408, 421, 500
MvaI	CCWGG	1 cut(s)	500
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	3 cut(s)	407, 408, 421
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	7 cut(s)	315, 502, 535, 556, 588, 602, 606
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	2 cut(s)	460, 517
NlaIV	GGNNCC	6 cut(s)	106, 202, 389, 405, 418, 572
NmuCI	GTSAC	2 cut(s)	522, 541
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	122, 161
PluTI	GGCGCC	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	493
PpuMI	RGGWCCY	2 cut(s)	403, 571
PshBI	ATTAAT	1 cut(s)	480
Psp5II	RGGWCCY	2 cut(s)	403, 571
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	6 cut(s)	106, 202, 389, 405, 418, 572
PspPI	GGNCC	3 cut(s)	403, 496, 571
PspPPI	RGGWCCY	2 cut(s)	403, 571
PstI	CTGCAG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	455, 461
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	121, 160
Sau3AI	GATC	7 cut(s)	315, 502, 535, 556, 588, 602, 606
Sau96I	GGNCC	3 cut(s)	403, 496, 571
ScrFI	CCNGG	4 cut(s)	407, 408, 421, 500
SduI	GDGCHC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	205
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	2 cut(s)	403, 571
SmaI	CCCGGG	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	455, 461
SmlI	CTYRAG	2 cut(s)	125, 560
SmoI	CTYRAG	2 cut(s)	125, 560
Sse9I	AATT	4 cut(s)	92, 298, 580, 593
SsiI	CCGC	4 cut(s)	321, 567, 600, 634
SspDI	GGCGCC	1 cut(s)	200
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	4 cut(s)	405, 406, 419, 498
StyI	CCWWGG	1 cut(s)	513
TaiI	ACGT	4 cut(s)	80, 287, 465, 495
TaqI	TCGA	5 cut(s)	96, 221, 425, 591, 605
TasI	AATT	4 cut(s)	92, 298, 580, 593
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	2 cut(s)	522, 541
TseI	GCWGC	2 cut(s)	120, 159
Tsp45I	GTSAC	2 cut(s)	522, 541
TspGWI	ACGGA	2 cut(s)	243, 280
TspMI	CCCGGG	1 cut(s)	406
TspRI	CASTG	1 cut(s)	550
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	403, 571
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	2 cut(s)	92, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmaI	CCCGGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.