Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006187.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

20620 .. 20997

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006187.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgggtcttcgtcttcctctatcagaatgcaactccagcgccggcagagtgctgtactcgaagcccgtctgcttcaagcaaccctccgctccttttccggctagcttctccacattcttcacattatccgtcagcaatttgaacgcctcctcgatcggcggcgggctggcttttatcatctcaccggactatgaggttgtcggagacgtcggcgggttcttggggctccagagcatggaggaccctggttcgggttccgggttgagcttcgtggcagtggacctcgtgaattgctggatcgaattcggcgggtcttcaacatatccgtttcgtattcgaatctcaaacccaaagacccgctcctctccttccatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

125

Amino Acids

13.15

Weight (kDa)

6.12

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccBSI	CCGCTC	2 cut(s)	89, 360
AciI	CCGC	6 cut(s)	87, 159, 162, 213, 309, 358
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
AgsI	TTSAA	3 cut(s)	76, 142, 318
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	105, 267
AluI	AGCT	2 cut(s)	105, 267
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	241, 280
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	174
AsuII	TTCGAA	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	241, 280
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	5, 306
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	102, 376
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	246, 259
Bme18I	GGWCC	2 cut(s)	241, 280
BmgT120I	GGNCC	2 cut(s)	241, 280
BmiI	GGNNCC	3 cut(s)	227, 243, 256
BmrFI	CCNGG	2 cut(s)	246, 259
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	5, 306
BpmI	CTGGAG	2 cut(s)	19, 212
Bpu14I	TTCGAA	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 250, 251
Bse118I	RCCGGY	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	244
BseLI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
BseRI	GAGGAG	2 cut(s)	139, 352
Bsh1285I	CGRYCG	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	4 cut(s)	42, 98, 185, 258
BslI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	153, 297
BspACI	CCGC	6 cut(s)	87, 159, 162, 213, 309, 358
BspLI	GGNNCC	3 cut(s)	227, 243, 256
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	337
BsrBI	CCGCTC	2 cut(s)	89, 360
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	153, 297
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	4 cut(s)	43, 103, 164, 168
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	156, 300
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	153, 297
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	244, 257
BstV2I	GAAGAC	2 cut(s)	5, 306
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	4 cut(s)	43, 103, 164, 168
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	241, 280
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	7 cut(s)	64, 101, 105, 166, 170, 226, 267
CviKI_1	RGCY	7 cut(s)	64, 101, 105, 166, 170, 226, 267
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	2 cut(s)	155, 299
DpnII	GATC	2 cut(s)	153, 297
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	241, 280
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	238
FaiI	YATR	3 cut(s)	192, 236, 322
FatI	CATG	1 cut(s)	234
FauI	CCCGC	4 cut(s)	155, 206, 302, 365
Fnu4HI	GCNGC	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	102, 376
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	2 cut(s)	19, 212
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	4 cut(s)	42, 98, 185, 258
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	4 cut(s)	42, 98, 185, 258
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	25, 203
Hpy188III	TCNNGA	2 cut(s)	229, 286
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	39
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	153, 297
LmnI	GCTCC	3 cut(s)	94, 231, 365
MaeI	CTAG	2 cut(s)	102, 376
MaeII	ACGT	1 cut(s)	207
MalI	GATC	2 cut(s)	155, 299
MbiI	CCGCTC	2 cut(s)	89, 360
MboI	GATC	2 cut(s)	153, 297
MboII	GAAGA	3 cut(s)	5, 109, 306
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	3 cut(s)	136, 289, 302
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	8 cut(s)	27, 94, 157, 160, 187, 232, 293, 373
MroNI	GCCGGC	1 cut(s)	41
MspI	CCGG	4 cut(s)	42, 98, 185, 258
MspR9I	CCNGG	2 cut(s)	246, 259
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	36
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	153, 297
NgoMIV	GCCGGC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	3 cut(s)	227, 243, 256
NspV	TTCGAA	1 cut(s)	337
PctI	GAATGC	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	161
Ple19I	CGATCG	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	227, 243, 256
PspPI	GGNCC	2 cut(s)	241, 280
PspPPI	RGGWCCY	1 cut(s)	241
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	153, 297
Sau96I	GGNCC	2 cut(s)	241, 280
ScrFI	CCNGG	2 cut(s)	246, 259
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	5 cut(s)	107, 198, 210, 269, 285
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	2 cut(s)	241, 280
Sse9I	AATT	3 cut(s)	136, 289, 302
SsiI	CCGC	6 cut(s)	87, 159, 162, 213, 309, 358
SspMI	CTAG	2 cut(s)	102, 376
StyD4I	CCNGG	2 cut(s)	244, 257
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	59, 152, 300, 337
TasI	AATT	3 cut(s)	136, 289, 302
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	339
TscAI	CASTG	1 cut(s)	282
TspGWI	ACGGA	2 cut(s)	118, 315
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	241, 280
XapI	RAATTY	1 cut(s)	302
XspI	CTAG	2 cut(s)	102, 376
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.