Rh2AG102200

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001606
Physical Location & Seq
Forward (+)
8704618 .. 8705797
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG102200.1

Sequence Viewer

Length: 597 bp
ATGTCCCAACGGATTCGCTCCATCATCTTTACTACTACACTCCACCTTTACCTTTGCTTTTCCAACTTCCTCATTACGTCAGCCGTAACCGAATTCGACTTCGGAACCCTCACCCTCAGCAGCCTCAAGCTCCTCGGTGACACCCACTTGAACAATGGCAGCGTGCGTCTAACTCGTGACCTTGCTGTCCCCAACTCCGGCACCGGCAGAGTGCTGTACTCGAAGCCCGTCCGCTTCAAGCAACCCTCCACTCCATTTCCGGCTAGCTTCTCCACATTCTTCACTTTCTCCGTCAGCAATTTGAACCCCTCCTCGATAGGCGGCGGGCTTGCTTTTATCATCTCGCCGGATGATGAGGTTGTCGGAGACTCCGACGGGTTCTTGGGGCTCCAGAGCATGGAGGACCCGGGTTCGGGTTCCGGGTCGAGCTTCGTGGCGGTGGAGTTCGACACGCTCATGGGCGTGGAGTTCAAGGACATTAATAGCAACCACGTGGGCCTGGATCTCAACTCCATGGTTTCGTCACAGGTCGGCGATCTTGGCGCTGCGGATATTGATCTCAAGAGCGGAGACCTCCAAAAGGTAGAAGAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

198

Amino Acids

21.15

Weight (kDa)

4.52

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 31 - 192 2.1e-36 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 397
AccBSI CCGCTC 1 cut(s) 567
AciI CCGC 6 cut(s) 232, 321, 324, 437, 548, 567
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 1 cut(s) 92
AcvI CACGTG 1 cut(s) 493
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 5 cut(s) 197, 397, 412, 413, 580
AgsI TTSAA 4 cut(s) 151, 238, 304, 472
AjnI CCWGG 1 cut(s) 498
AluBI AGCT 4 cut(s) 130, 267, 429, 594
AluI AGCT 4 cut(s) 130, 267, 429, 594
Alw26I GTCTC 2 cut(s) 360, 564
AlwI GGATC 1 cut(s) 510
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 1 cut(s) 496
ApeKI GCWGC 3 cut(s) 120, 159, 545
ApoI RAATTY 1 cut(s) 92
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 403, 496
AsuC2I CCSGG 3 cut(s) 407, 408, 421
AsuHPI GGTGA 2 cut(s) 103, 149
AsuNHI GCTAGC 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 406
AvaII GGWCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 390
BauI CACGAG 1 cut(s) 174
BbrPI CACGTG 1 cut(s) 493
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 132, 171, 532
BccI CCATC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 500
BcnI CCSGG 3 cut(s) 407, 408, 421
BcoDI GTCTC 2 cut(s) 360, 564
BfaI CTAG 2 cut(s) 264, 595
BfoI RGCGCY 1 cut(s) 546
BisI GCNGC 4 cut(s) 121, 160, 322, 546
BlsI GCNGC 4 cut(s) 122, 161, 323, 547
Bme1390I CCNGG 4 cut(s) 407, 408, 421, 500
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 403, 496
BmiI GGNNCC 5 cut(s) 106, 202, 389, 405, 418
BmrFI CCNGG 4 cut(s) 407, 408, 421, 500
BmtI GCTAGC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 110, 545
BpuMI CCSGG 3 cut(s) 407, 408, 421
BsaAI YACGTR 1 cut(s) 493
BsaBI GATNNNNATC 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 133, 406, 513
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 397, 412, 413, 580
Bse118I RCCGGY 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 3 cut(s) 133, 406, 513
BseGI GGATG 1 cut(s) 355
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 5 cut(s) 197, 397, 412, 413, 580
BseMII CTCAG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 122, 301
BseXI GCAGC 3 cut(s) 132, 171, 532
BshFI GGCC 1 cut(s) 498
BshNI GGYRCC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 6 cut(s) 198, 204, 260, 347, 407, 420
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 5 cut(s) 197, 397, 412, 413, 580
BsmAI GTCTC 2 cut(s) 360, 564
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 498
Bso31I GGTCTC 1 cut(s) 564
BsoBI CYCGRG 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 502, 535, 556
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 6 cut(s) 232, 321, 324, 437, 548, 567
BspANI GGCC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 5 cut(s) 106, 202, 389, 405, 418
BspOI GCTAGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 133, 406, 513
BssMI GATC 3 cut(s) 502, 535, 556
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 500
BstBAI YACGTR 1 cut(s) 493
BstC8I GCNNGC 4 cut(s) 164, 265, 326, 330
BstDEI CTNAG 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 513
BstENI CCTNNNNNAGG 1 cut(s) 578
BstF5I GGATG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 3 cut(s) 505, 538, 559
BstMAI GTCTC 2 cut(s) 360, 564
BstMBI GATC 3 cut(s) 502, 535, 556
BstMWI GCNNNNNNNGC 1 cut(s) 540
BstNI CCWGG 1 cut(s) 500
BstSCI CCNGG 4 cut(s) 405, 406, 419, 498
BstV1I GCAGC 3 cut(s) 132, 171, 532
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 1 cut(s) 355
Cac8I GCNNGC 4 cut(s) 164, 265, 326, 330
CfoI GCGC 1 cut(s) 545
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 403, 496
Cfr9I CCCGGG 1 cut(s) 406
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 217
CviAII CATG 3 cut(s) 397, 457, 514
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 116
DpnI GATC 3 cut(s) 504, 537, 558
DpnII GATC 3 cut(s) 502, 535, 556
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 403
Eco72I CACGTG 1 cut(s) 493
Eco88I CYCGRG 1 cut(s) 406
EcoNI CCTNNNNNAGG 1 cut(s) 578
EcoO109I RGGNCCY 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 498
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 3 cut(s) 400, 460, 517
FaiI YATR 3 cut(s) 398, 458, 515
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 396, 456, 513
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 4 cut(s) 121, 160, 322, 546
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 4 cut(s) 121, 160, 322, 546
FspBI CTAG 2 cut(s) 264, 595
GlaI GCGC 1 cut(s) 544
GluI GCNGC 4 cut(s) 121, 160, 322, 546
GsuI CTGGAG 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 1 cut(s) 498
HapII CCGG 6 cut(s) 198, 204, 260, 347, 407, 420
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 545
Hin1II CATG 3 cut(s) 400, 460, 517
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 2 cut(s) 13, 368
HpaII CCGG 6 cut(s) 198, 204, 260, 347, 407, 420
HphI GGTGA 2 cut(s) 103, 149
Hpy188I TCNGA 3 cut(s) 104, 365, 373
Hpy188III TCNNGA 3 cut(s) 176, 391, 562
Hpy99I CGWCG 1 cut(s) 377
HpyCH4IV ACGT 2 cut(s) 77, 492
HpyF10VI GCNNNNNNNGC 1 cut(s) 540
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 2 cut(s) 77, 492
Hsp92II CATG 3 cut(s) 400, 460, 517
HspAI GCGC 1 cut(s) 543
Kzo9I GATC 3 cut(s) 502, 535, 556
LmnI GCTCC 3 cut(s) 23, 135, 393
Lsp1109I GCAGC 3 cut(s) 132, 171, 532
MaeI CTAG 2 cut(s) 264, 595
MaeII ACGT 2 cut(s) 77, 492
MaeIII GTNAC 4 cut(s) 85, 137, 176, 522
MalI GATC 3 cut(s) 504, 537, 558
MbiI CCGCTC 1 cut(s) 567
MboI GATC 3 cut(s) 502, 535, 556
MboII GAAGA 1 cut(s) 271
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 2 cut(s) 92, 298
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 3 cut(s) 87, 343, 396
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 455, 461
MspI CCGG 6 cut(s) 198, 204, 260, 347, 407, 420
MspR9I CCNGG 4 cut(s) 407, 408, 421, 500
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 540
NciI CCSGG 3 cut(s) 407, 408, 421
NcoI CCATGG 1 cut(s) 513
NdeII GATC 3 cut(s) 502, 535, 556
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 3 cut(s) 400, 460, 517
NlaIV GGNNCC 5 cut(s) 106, 202, 389, 405, 418
NmuCI GTSAC 3 cut(s) 137, 176, 522
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 4 cut(s) 122, 161, 323, 547
PleI GAGTC 1 cut(s) 362
PmaCI CACGTG 1 cut(s) 493
PmlI CACGTG 1 cut(s) 493
PpsI GAGTC 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 493
PpuMI RGGWCCY 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 498
PspCI CACGTG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 5 cut(s) 106, 202, 389, 405, 418
PspPI GGNCC 2 cut(s) 403, 496
PspPPI RGGWCCY 1 cut(s) 403
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 455, 461
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 4 cut(s) 121, 160, 322, 546
Sau3AI GATC 3 cut(s) 502, 535, 556
Sau96I GGNCC 2 cut(s) 403, 496
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 4 cut(s) 407, 408, 421, 500
SduI GDGCHC 1 cut(s) 390
SinI GGWCC 1 cut(s) 403
SmaI CCCGGG 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 455, 461
SmlI CTYRAG 2 cut(s) 125, 560
SmoI CTYRAG 2 cut(s) 125, 560
Sse9I AATT 2 cut(s) 92, 298
SsiI CCGC 6 cut(s) 232, 321, 324, 437, 548, 567
SspMI CTAG 2 cut(s) 264, 595
StyD4I CCNGG 4 cut(s) 405, 406, 419, 498
StyI CCWWGG 1 cut(s) 513
TaiI ACGT 2 cut(s) 80, 495
TaqI TCGA 5 cut(s) 96, 221, 314, 425, 447
TasI AATT 2 cut(s) 92, 298
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseFI GTSAC 3 cut(s) 137, 176, 522
TseI GCWGC 3 cut(s) 120, 159, 545
Tsp45I GTSAC 3 cut(s) 137, 176, 522
TspGWI ACGGA 2 cut(s) 25, 280
TspMI CCCGGG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 403
VspI ATTAAT 1 cut(s) 480
XagI CCTNNNNNAGG 1 cut(s) 578
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XmaI CCCGGG 1 cut(s) 406
XspI CTAG 2 cut(s) 264, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.