Rroxscaffold_2G00090660

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001606
Physical Location & Seq
Forward (+)
12363200 .. 12363451
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090660.1

Sequence Viewer

Length: 252 bp
ATGGGTCTTCATCTTCCTCTATCAGAATGCAACTTCAGCGCCGGCAGAGTGCTGTACTCCAAGCCCGTCCGCTTCAAGCAACCCTCCACTCCGTTTCCGGCTAGCTTCTCCACATTCTTCACGTTCTCCGTCAGCAATTTGAACCCCTCCTCGATCGGCGGTGGGCTGGCTTTTATCATCTTGTTGGATGTCGAGGTTGTCGGAGACGCCGGCGGGTTCTTGGGGCTCCAAAGCGTGGAGGACCCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

83

Amino Acids

8.77

Weight (kDa)

4.95

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 4 - 78 3.4e-14 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 235
AciI CCGC 3 cut(s) 70, 159, 213
AcuI CTGAAG 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 2 cut(s) 76, 142
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 244
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 241
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 227, 243
BmtI GCTAGC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 2 cut(s) 41, 209
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 3 cut(s) 42, 98, 210
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 3 cut(s) 70, 159, 213
BspLI GGNNCC 2 cut(s) 227, 243
BspOI GCTAGC 1 cut(s) 105
BsrFI RCCGGY 2 cut(s) 41, 209
BssAI RCCGGY 2 cut(s) 41, 209
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 43, 103, 168, 211
BstF5I GGATG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 36
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 4 cut(s) 43, 103, 168, 211
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 2 cut(s) 41, 209
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 6 cut(s) 64, 101, 105, 166, 170, 226
CviKI_1 RGCY 6 cut(s) 64, 101, 105, 166, 170, 226
CviQI GTAC 1 cut(s) 55
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 198
FauI CCCGC 1 cut(s) 206
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 42
HapII CCGG 3 cut(s) 42, 98, 210
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 207
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HpaII CCGG 3 cut(s) 42, 98, 210
Hpy188I TCNGA 2 cut(s) 25, 203
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 207
HspAI GCGC 1 cut(s) 39
KroI GCCGGC 2 cut(s) 41, 209
KroNI GCCGGC 2 cut(s) 43, 211
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 4 cut(s) 55, 111, 152, 223
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 122
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 2 cut(s) 5, 109
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 136
MmeI TCCRAC 2 cut(s) 165, 181
MnlI CCTC 6 cut(s) 27, 94, 157, 160, 187, 232
MreI CGCCGGCG 1 cut(s) 209
MroNI GCCGGC 2 cut(s) 41, 209
MspI CCGG 3 cut(s) 42, 98, 210
Mva1269I GAATGC 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 36
NaeI GCCGGC 2 cut(s) 43, 211
NdeII GATC 1 cut(s) 153
NgoMIV GCCGGC 2 cut(s) 41, 209
NheI GCTAGC 1 cut(s) 101
NlaIV GGNNCC 2 cut(s) 227, 243
PctI GAATGC 1 cut(s) 32
PdiI GCCGGC 2 cut(s) 43, 211
PflMI CCANNNNNTGG 1 cut(s) 235
Ple19I CGATCG 1 cut(s) 156
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 227, 243
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 241
SduI GDGCHC 1 cut(s) 228
SetI ASST 3 cut(s) 107, 125, 198
SgrAI CRCCGGYG 1 cut(s) 209
SinI GGWCC 1 cut(s) 241
Sse9I AATT 1 cut(s) 136
SsiI CCGC 3 cut(s) 70, 159, 213
SspMI CTAG 1 cut(s) 102
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 152, 192
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 54
TspGWI ACGGA 2 cut(s) 81, 118
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 241
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.