Rh3CG187300

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001606
Physical Location & Seq
Reverse (-)
16454872 .. 16464526
9655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG187300.1

Sequence Viewer

Length: 540 bp
ATGCAGGTTCTTTACCTCACTAGCTCTTCTTGGTTCTCTGGAATGAAAGTGACCGGTCCAAGTTCAAGCGAGGCAAAATTCGACTTCGGAACCCTCACCCTCAGCAGCCTCAAGCTCCTCGGCGACGTCCACTTGAATAATGGCAGCGTACGTCTCACTCGCGACCTTGCCGTCCCCAACTTTGGCGCCGGCAGAGTGCTGTACTCGAAGCCCGTCCGCTTCAAGCAACCCTCCACTCCATTTCCGGCTAGCTTCTCCACATTCTTCACGTTCTCCGTCAACAATTTGAACCCATCCTCGATCTGCGGCGGGCTGGCTTTTATCATCTCGCCGAACGATGAGGTCGTCGGAGACGCCGACGGGTTCTTGGGGCTCCAGAGCGTGGAGGACCCGGGTTCGGGTTCTGGGTCGAGCTTCGTGGCGGTGGAGTTTGACACGCTCATGGATGTGGAGTTCAAGGACATTAATAGCAACCACGTAGGCCTAGATCTCAACTCCATGGTTTCATCACAGCAAAGCAGTTTGGCTGAGGCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

179

Amino Acids

19.02

Weight (kDa)

4.59

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 26 - 175 3.6e-34 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 382
AccII CGCG 1 cut(s) 162
AciI CCGC 4 cut(s) 217, 306, 309, 422
AcsI RAATTY 1 cut(s) 77
AcyI GRCGYC 3 cut(s) 126, 186, 354
AfaI GTAC 2 cut(s) 150, 203
AfiI CCNNNNNNNGG 4 cut(s) 182, 382, 397, 398
AgeI ACCGGT 1 cut(s) 53
AgsI TTSAA 5 cut(s) 66, 136, 223, 289, 457
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
AluBI AGCT 4 cut(s) 24, 115, 252, 414
AluI AGCT 4 cut(s) 24, 115, 252, 414
Alw26I GTCTC 2 cut(s) 158, 345
Ama87I CYCGRG 1 cut(s) 391
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 2 cut(s) 105, 144
ApoI RAATTY 1 cut(s) 77
AseI ATTAAT 1 cut(s) 465
AsiGI ACCGGT 1 cut(s) 53
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 56, 388
AsuC2I CCSGG 2 cut(s) 392, 393
AsuHPI GGTGA 1 cut(s) 88
AsuNHI GCTAGC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 2 cut(s) 56, 388
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 375
BbvCI CCTCAGC 2 cut(s) 101, 528
BbvI GCAGC 2 cut(s) 117, 156
BccI CCATC 1 cut(s) 301
BceAI ACGGC 1 cut(s) 155
BcnI CCSGG 2 cut(s) 392, 393
BcoDI GTCTC 2 cut(s) 158, 345
BfaI CTAG 3 cut(s) 21, 249, 485
BfoI RGCGCY 1 cut(s) 189
BglII AGATCT 1 cut(s) 487
BisI GCNGC 3 cut(s) 106, 145, 307
BlsI GCNGC 3 cut(s) 107, 146, 308
Bme1390I CCNGG 2 cut(s) 392, 393
Bme18I GGWCC 2 cut(s) 56, 388
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 56, 388
BmiI GGNNCC 4 cut(s) 91, 187, 374, 390
BmrFI CCNGG 2 cut(s) 392, 393
BmtI GCTAGC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 359
Bpu10I CCTNAGC 2 cut(s) 101, 528
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 392, 393
BsaAI YACGTR 1 cut(s) 478
BsaHI GRCGYC 3 cut(s) 126, 186, 354
BsaJI CCNNGG 3 cut(s) 118, 391, 498
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 4 cut(s) 182, 382, 397, 398
Bse118I RCCGGY 2 cut(s) 53, 188
BseDI CCNNGG 3 cut(s) 118, 391, 498
BseGI GGATG 2 cut(s) 293, 451
BseLI CCNNNNNNNGG 4 cut(s) 182, 382, 397, 398
BseMII CTCAG 2 cut(s) 115, 519
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 117, 156
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 483
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 4 cut(s) 54, 189, 245, 392
BsiWI CGTACG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 4 cut(s) 182, 382, 397, 398
BsmAI GTCTC 2 cut(s) 158, 345
BsmBI CGTCTC 2 cut(s) 158, 345
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 300, 487
Bsp19I CCATGG 1 cut(s) 498
Bsp68I TCGCGA 1 cut(s) 162
BspACI CCGC 4 cut(s) 217, 306, 309, 422
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 2 cut(s) 114, 520
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 4 cut(s) 91, 187, 374, 390
BspOI GCTAGC 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 185
BsrFI RCCGGY 2 cut(s) 53, 188
BssAI RCCGGY 2 cut(s) 53, 188
BssECI CCNNGG 3 cut(s) 118, 391, 498
BssMI GATC 2 cut(s) 300, 487
BssNI GRCGYC 3 cut(s) 126, 186, 354
BssT1I CCWWGG 1 cut(s) 498
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 3 cut(s) 126, 186, 354
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 4 cut(s) 190, 250, 311, 315
BstDEI CTNAG 2 cut(s) 101, 528
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 293, 451
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 2 cut(s) 303, 490
BstMAI GTCTC 2 cut(s) 158, 345
BstMBI GATC 2 cut(s) 300, 487
BstSCI CCNGG 2 cut(s) 390, 391
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 117, 156
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 1 cut(s) 483
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 293, 451
BtuMI TCGCGA 1 cut(s) 162
Cac8I GCNNGC 4 cut(s) 190, 250, 311, 315
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 2 cut(s) 53, 188
Cfr13I GGNCC 2 cut(s) 56, 388
Cfr9I CCCGGG 1 cut(s) 391
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 149, 202
CspAI ACCGGT 1 cut(s) 53
CviAII CATG 2 cut(s) 442, 499
CviQI GTAC 2 cut(s) 149, 202
DdeI CTNAG 2 cut(s) 101, 528
DinI GGCGCC 1 cut(s) 187
DpnI GATC 2 cut(s) 302, 489
DpnII GATC 2 cut(s) 300, 487
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 498
Eco147I AGGCCT 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 56, 388
Eco88I CYCGRG 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 375
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 498
Esp3I CGTCTC 2 cut(s) 158, 345
FaeI CATG 2 cut(s) 445, 502
FaiI YATR 2 cut(s) 443, 500
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 441, 498
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 3 cut(s) 106, 145, 307
FokI GGATG 2 cut(s) 280, 458
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 3 cut(s) 106, 145, 307
FspBI CTAG 3 cut(s) 21, 249, 485
GlaI GCGC 1 cut(s) 187
GluI GCNGC 3 cut(s) 106, 145, 307
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 483
HapII CCGG 4 cut(s) 54, 189, 245, 392
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 3 cut(s) 126, 186, 354
Hin1II CATG 2 cut(s) 445, 502
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HpaII CCGG 4 cut(s) 54, 189, 245, 392
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 130, 280
Hpy188I TCNGA 2 cut(s) 89, 350
Hpy188III TCNNGA 3 cut(s) 39, 161, 376
Hpy8I GTNNAC 2 cut(s) 130, 280
Hpy99I CGWCG 3 cut(s) 128, 350, 362
HpyCH4IV ACGT 4 cut(s) 126, 151, 269, 477
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 101, 528
HpySE526I ACGT 4 cut(s) 126, 151, 269, 477
Hsp92I GRCGYC 3 cut(s) 126, 186, 354
Hsp92II CATG 2 cut(s) 445, 502
HspAI GCGC 1 cut(s) 186
KasI GGCGCC 1 cut(s) 185
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 300, 487
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 2 cut(s) 120, 378
LpnPI CCDG 8 cut(s) 24, 67, 202, 258, 299, 389, 390, 405
Lsp1109I GCAGC 2 cut(s) 117, 156
MaeI CTAG 3 cut(s) 21, 249, 485
MaeII ACGT 4 cut(s) 126, 151, 269, 477
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 302, 489
MboI GATC 2 cut(s) 300, 487
MboII GAAGA 2 cut(s) 18, 256
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 3 cut(s) 77, 283, 535
Mly113I GGCGCC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 328
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 2 cut(s) 440, 446
MspI CCGG 4 cut(s) 54, 189, 245, 392
MspR9I CCNGG 2 cut(s) 392, 393
MvnI CGCG 1 cut(s) 162
NaeI GCCGGC 1 cut(s) 190
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 2 cut(s) 392, 393
NcoI CCATGG 1 cut(s) 498
NdeII GATC 2 cut(s) 300, 487
NgoMIV GCCGGC 1 cut(s) 188
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 2 cut(s) 445, 502
NlaIV GGNNCC 4 cut(s) 91, 187, 374, 390
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 49
NruI TCGCGA 1 cut(s) 162
PceI AGGCCT 1 cut(s) 483
PciSI GCTCTTC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 2 cut(s) 342, 354
PdiI GCCGGC 1 cut(s) 190
Pfl23II CGTACG 1 cut(s) 148
PflMI CCANNNNNTGG 1 cut(s) 382
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 3 cut(s) 107, 146, 308
PluTI GGCGCC 1 cut(s) 189
Ppu21I YACGTR 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 388
PshBI ATTAAT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 388
PspLI CGTACG 1 cut(s) 148
PspN4I GGNNCC 4 cut(s) 91, 187, 374, 390
PspPI GGNCC 2 cut(s) 56, 388
PspPPI RGGWCCY 1 cut(s) 388
PsuI RGATCY 1 cut(s) 487
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 2 cut(s) 150, 203
RsaNI GTAC 2 cut(s) 149, 202
RseI CAYNNNNRTG 2 cut(s) 440, 446
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 3 cut(s) 106, 145, 307
Sau3AI GATC 2 cut(s) 300, 487
Sau96I GGNCC 2 cut(s) 56, 388
ScrFI CCNGG 2 cut(s) 392, 393
SduI GDGCHC 1 cut(s) 375
SfoI GGCGCC 1 cut(s) 187
SinI GGWCC 2 cut(s) 56, 388
SmaI CCCGGG 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 440, 446
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 77, 283, 535
SseBI AGGCCT 1 cut(s) 483
SsiI CCGC 4 cut(s) 217, 306, 309, 422
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 3 cut(s) 21, 249, 485
StuI AGGCCT 1 cut(s) 483
StyD4I CCNGG 2 cut(s) 390, 391
StyI CCWWGG 1 cut(s) 498
TaiI ACGT 4 cut(s) 129, 154, 272, 480
TaqI TCGA 4 cut(s) 81, 206, 299, 410
TasI AATT 3 cut(s) 77, 283, 535
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 309
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 105, 144
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 59, 495
TspGWI ACGGA 1 cut(s) 265
TspMI CCCGGG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 56, 388
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmaI CCCGGG 1 cut(s) 391
XspI CTAG 3 cut(s) 21, 249, 485
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.