Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021704.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

10746 .. 11330

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021704.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggacaacacccaaaggcaacttgataatcactgtgctgccctccgccgtaaaataacaaaaattaaatggctctttatttgtggagtacccgtggtaatttttcttatcttccttatgattttggtcctcaccaagagcccgaataacgtcaactgtcatgtaaccagtgcattgctcaccgattccaacctcacccttgaaatcactattcgaaacccgaacagtttctaccgtgtccaccatgatcacattgacattactgccaactacaaaaaccagacgttgggttcgacattgaattatgcctccttctcgcaaggacgtaatcgcgaaacacggctaacaccgtccttcaacgggctgatccttggcggaggcgatgacctccgcgggtcgaacaactgcggaaataactattacgatataatcgtcaagctcaacatgcaagacgagtacaagaaacagattgttcccaagaagagatttcaaaggaatttggagtatacgtgcgagttgaaggttccttctggcagtgggaatagcttcaacaccaccctgtgccgctatctacaaattccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

194

Amino Acids

22.17

Weight (kDa)

9.39

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	506
AccII	CGCG	2 cut(s)	333, 393
AciI	CCGC	6 cut(s)	46, 375, 391, 393, 408, 565
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	496, 576
AdeI	CACNNNGTG	1 cut(s)	561
AfaI	GTAC	2 cut(s)	90, 458
AfiI	CCNNNNNNNGG	2 cut(s)	286, 360
AgsI	TTSAA	6 cut(s)	203, 301, 358, 491, 520, 550
AluBI	AGCT	2 cut(s)	439, 546
AluI	AGCT	2 cut(s)	439, 546
AlwI	GGATC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	496, 576
ArsI	GACNNNNNNTTYG	2 cut(s)	274, 306
Asp700I	GAANNNNTTC	2 cut(s)	227, 545
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	3 cut(s)	124, 172, 187
AsuII	TTCGAA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	33, 356
BclI	TGATCA	1 cut(s)	247
BisI	GCNGC	2 cut(s)	39, 565
BlsI	GCNGC	2 cut(s)	40, 566
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	93, 370, 391
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 360
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	173
BseDI	CCNNGG	3 cut(s)	93, 370, 391
BseLI	CCNNNNNNNGG	2 cut(s)	286, 360
BseMI	GCAATG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	333, 393
BslI	CCNNNNNNNGG	2 cut(s)	286, 360
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	247, 366
Bsp68I	TCGCGA	1 cut(s)	333
BspACI	CCGC	6 cut(s)	46, 375, 391, 393, 408, 565
BspFNI	CGCG	2 cut(s)	333, 393
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	361
BspT104I	TTCGAA	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	93, 370, 391
BssMI	GATC	2 cut(s)	247, 366
BssNAI	GTATAC	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	370
Bst1107I	GTATAC	1 cut(s)	507
Bst4CI	ACNGT	5 cut(s)	35, 158, 227, 236, 351
Bst6I	CTCTTC	1 cut(s)	476
BstBAI	YACGTR	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	214
BstDSI	CCRYGG	2 cut(s)	93, 391
BstFNI	CGCG	2 cut(s)	333, 393
BstKTI	GATC	2 cut(s)	250, 369
BstMBI	GATC	2 cut(s)	247, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	448
BstUI	CGCG	2 cut(s)	333, 393
BstV1I	GCAGC	1 cut(s)	25
BstZ17I	GTATAC	1 cut(s)	507
BtgI	CCRYGG	2 cut(s)	93, 391
BtgZI	GCGATG	1 cut(s)	396
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	3 cut(s)	31, 175, 541
BtuMI	TCGCGA	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	127
Cfr42I	CCGCGG	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	89, 457
CviAII	CATG	4 cut(s)	161, 245, 445, 582
CviJI	RGCY	6 cut(s)	73, 141, 343, 364, 439, 546
CviKI_1	RGCY	6 cut(s)	73, 141, 343, 364, 439, 546
CviQI	GTAC	2 cut(s)	89, 457
DpnI	GATC	2 cut(s)	249, 368
DpnII	GATC	2 cut(s)	247, 366
DraIII	CACNNNGTG	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EciI	GGCGGA	2 cut(s)	35, 390
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	164, 248, 448, 585
FaiI	YATR	8 cut(s)	119, 162, 246, 306, 428, 446, 507, 583
FatI	CATG	4 cut(s)	160, 244, 444, 581
FauI	CCCGC	1 cut(s)	386
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	2 cut(s)	39, 565
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	39, 565
GluI	GCNGC	2 cut(s)	39, 565
Hin1II	CATG	4 cut(s)	164, 248, 448, 585
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	3 cut(s)	124, 172, 187
Hpy166II	GTNNAC	3 cut(s)	154, 241, 507
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	3 cut(s)	154, 241, 507
HpyAV	CCTTC	4 cut(s)	322, 364, 514, 537
HpyCH4III	ACNGT	5 cut(s)	35, 158, 227, 236, 351
HpyCH4IV	ACGT	4 cut(s)	150, 284, 325, 509
HpyCH4V	TGCA	2 cut(s)	173, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpySE526I	ACGT	4 cut(s)	150, 284, 325, 509
Hsp92II	CATG	4 cut(s)	164, 248, 448, 585
Ksp22I	TGATCA	1 cut(s)	247
KspI	CCGCGG	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	247, 366
LpnPI	CCDG	4 cut(s)	181, 293, 516, 572
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	4 cut(s)	150, 284, 325, 509
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	249, 368
MboI	GATC	2 cut(s)	247, 366
MboII	GAAGA	2 cut(s)	103, 493
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	5 cut(s)	63, 99, 301, 496, 576
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	6 cut(s)	53, 140, 203, 319, 371, 398
MroXI	GAANNNNTTC	2 cut(s)	227, 545
MseI	TTAA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	393
MvnI	CGCG	2 cut(s)	333, 393
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeII	GATC	2 cut(s)	247, 366
NlaIII	CATG	4 cut(s)	164, 248, 448, 585
NlaIV	GGNNCC	1 cut(s)	525
NruI	TCGCGA	1 cut(s)	333
NspI	RCATGY	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	2 cut(s)	290, 429
PdmI	GAANNNNTTC	2 cut(s)	227, 545
PfeI	GAWTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	40, 566
Ppu21I	YACGTR	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	127
PsrI	GAACNNNNNNTAC	2 cut(s)	215, 247
RruI	TCGCGA	1 cut(s)	333
RsaI	GTAC	2 cut(s)	90, 458
RsaNI	GTAC	2 cut(s)	89, 457
SacII	CCGCGG	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	39, 565
Sau3AI	GATC	2 cut(s)	247, 366
Sau96I	GGNCC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	9 cut(s)	153, 195, 287, 328, 390, 441, 512, 525, 548
Sfr303I	CCGCGG	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	5 cut(s)	63, 99, 301, 496, 576
SsiI	CCGC	6 cut(s)	46, 375, 391, 393, 408, 565
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	5 cut(s)	35, 158, 227, 236, 351
TaiI	ACGT	4 cut(s)	153, 287, 328, 512
TaqI	TCGA	3 cut(s)	214, 293, 398
TasI	AATT	5 cut(s)	63, 99, 301, 496, 576
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	3 cut(s)	38, 175, 541
TseI	GCWGC	1 cut(s)	38
TspRI	CASTG	3 cut(s)	38, 175, 541
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	2 cut(s)	496, 576
XceI	RCATGY	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	2 cut(s)	227, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.