Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

17142991 .. 17144569

Gene Structure 1579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTTCATAGAGCTACGGCTCACAGCTTCTCCACTTTCTTCACGTTCTTCGTCAGCAATTTGAACCCTTCCTCGATTGGTGGCGGGCTGGCTTTTATCATCTCGCCGGATGATGAGGTTGTCGGAGATGCCGACAGGTTCTTGGGGCTCCGCAGTGTGGAGGACGGGGTTTGGGTTCCTGGTCGAGCTTCGTGGCGGTGGAGCTCGACACGCTCATGGACGTTGAGTTCGAGGACATTAATAGCAACCACGTGGGCTTGGATCTCAACTCCATGGTTTCGTCACAGTCGGCGATCTTGGCGCTGTGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

104

Amino Acids

11.86

Weight (kDa)

11.04

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	6 - 52	3.4e-07	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	84, 151, 196
AclWI	GGATC	1 cut(s)	269
AcvI	CACGTG	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	178
AloI	GAACNNNNNNTCC	2 cut(s)	211, 243
AluBI	AGCT	4 cut(s)	14, 27, 188, 204
AluI	AGCT	4 cut(s)	14, 27, 188, 204
Alw21I	GWGCWC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	269
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AseI	ATTAAT	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	303
BanII	GRGCYC	2 cut(s)	150, 206
BbrPI	CACGTG	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	149, 177
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	150, 206
Bsp143I	GATC	2 cut(s)	261, 293
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	3 cut(s)	84, 151, 196
BspLI	GGNNCC	2 cut(s)	149, 177
BspPI	GGATC	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	2 cut(s)	261, 293
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	86, 90
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	264, 296
BstMBI	GATC	2 cut(s)	261, 293
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 298
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	86, 90
CfoI	GCGC	1 cut(s)	303
CviAII	CATG	2 cut(s)	216, 273
CviJI	RGCY	9 cut(s)	14, 20, 27, 88, 92, 148, 188, 204, 257
CviKI_1	RGCY	9 cut(s)	14, 20, 27, 88, 92, 148, 188, 204, 257
DpnI	GATC	2 cut(s)	263, 295
DpnII	GATC	2 cut(s)	261, 293
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	272
Eco24I	GRGCYC	2 cut(s)	150, 206
Eco53kI	GAGCTC	1 cut(s)	204
Eco72I	CACGTG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	272
EcoT38I	GRGCYC	2 cut(s)	150, 206
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	2 cut(s)	219, 276
FaiI	YATR	3 cut(s)	9, 217, 274
FatI	CATG	2 cut(s)	215, 272
FauI	CCCGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	2 cut(s)	150, 206
GlaI	GCGC	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	304
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	219, 276
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	3 cut(s)	44, 221, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 298
HpySE526I	ACGT	3 cut(s)	44, 221, 251
Hsp92II	CATG	2 cut(s)	219, 276
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	261, 293
LmnI	GCTCC	2 cut(s)	153, 201
LpnPI	CCDG	5 cut(s)	74, 120, 121, 165, 192
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	3 cut(s)	44, 221, 251
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	263, 295
MboI	GATC	2 cut(s)	261, 293
MboII	GAAGA	2 cut(s)	31, 40
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	150, 206
MluCI	AATT	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	82, 109, 154, 225
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	214
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	210, 298
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	261, 293
NlaIII	CATG	2 cut(s)	219, 276
NlaIV	GGNNCC	2 cut(s)	149, 177
NmuCI	GTSAC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 227
PmaCI	CACGTG	1 cut(s)	252
PmlI	CACGTG	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	252
PshBI	ATTAAT	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	178
PspCI	CACGTG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	149, 177
PsuI	RGATCY	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	261, 293
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	150, 206
SetI	ASST	9 cut(s)	16, 29, 47, 120, 140, 190, 206, 224, 254
SfaNI	GCATC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	214
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	3 cut(s)	84, 151, 196
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	3 cut(s)	47, 224, 254
TaqI	TCGA	4 cut(s)	74, 184, 206, 230
TasI	AATT	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspRI	CASTG	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.