Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002835.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

46722 .. 47147

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002835.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgggtcttcattttcctctatcagaatgcaactccggcgccggcagagtgctgtactcgaagcccgtccgcttcaagcaaccctccactccgtttctggctagcttctccacattcttcacgttctccgtcagcaatttgaacccctccttgataggcggcgggctggcttttgtcatctcgatcgacaatgaggttgtcggagacgccggctcgtcactactctcaatctcttacattctcatcctcatctatttcttcaactctccagaacccaccactaaatgggtcttcgtcttcctctatcagaatgcaactccggcgccagcagagtgctgtactcgaagcccgtccgcttcaagcaaccctccactccgtttccggctagcttctccacattcttcacgttctccgtcagcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

141

Amino Acids

15.22

Weight (kDa)

8.96

Isoelectric Point (pI)

67.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	38, 322
AccB7I	CCANNNNNTGG	1 cut(s)	285
AciI	CCGC	4 cut(s)	70, 159, 162, 354
AcyI	GRCGYC	3 cut(s)	39, 207, 323
AfaI	GTAC	2 cut(s)	56, 340
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	76, 142, 262, 360
AluBI	AGCT	2 cut(s)	105, 389
AluI	AGCT	2 cut(s)	105, 389
Alw26I	GTCTC	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	41, 325
AsuNHI	GCTAGC	2 cut(s)	101, 385
BanI	GGYRCC	2 cut(s)	38, 322
BbsI	GAAGAC	2 cut(s)	283, 289
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	102, 386
BfoI	RGCGCY	2 cut(s)	42, 326
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	40, 324
BmtI	GCTAGC	2 cut(s)	105, 389
BpiI	GAAGAC	2 cut(s)	283, 289
BpmI	CTGGAG	1 cut(s)	252
BsaHI	GRCGYC	3 cut(s)	39, 207, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	2 cut(s)	41, 209
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	186
BshNI	GGYRCC	2 cut(s)	38, 322
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	5 cut(s)	36, 42, 210, 320, 382
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmI	GAATGC	2 cut(s)	32, 316
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	4 cut(s)	70, 159, 162, 354
BspLI	GGNNCC	2 cut(s)	40, 324
BspOI	GCTAGC	2 cut(s)	105, 389
BspT107I	GGYRCC	2 cut(s)	38, 322
BsrFI	RCCGGY	2 cut(s)	41, 209
BssAI	RCCGGY	2 cut(s)	41, 209
BssMI	GATC	1 cut(s)	183
BssNI	GRCGYC	3 cut(s)	39, 207, 323
BstACI	GRCGYC	3 cut(s)	39, 207, 323
BstC8I	GCNNGC	7 cut(s)	43, 103, 164, 168, 211, 327, 387
BstF5I	GGATG	1 cut(s)	243
BstH2I	RGCGCY	2 cut(s)	42, 326
BstHHI	GCGC	2 cut(s)	41, 325
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	183
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 320
BstV2I	GAAGAC	2 cut(s)	283, 289
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	7 cut(s)	43, 103, 164, 168, 211, 327, 387
CfoI	GCGC	2 cut(s)	41, 325
Cfr10I	RCCGGY	2 cut(s)	41, 209
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	55, 339
CviJI	RGCY	9 cut(s)	64, 101, 105, 166, 170, 213, 348, 385, 389
CviKI_1	RGCY	9 cut(s)	64, 101, 105, 166, 170, 213, 348, 385, 389
CviQI	GTAC	2 cut(s)	55, 339
DinI	GGCGCC	2 cut(s)	40, 324
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
EgeI	GGCGCC	2 cut(s)	40, 324
EheI	GGCGCC	2 cut(s)	40, 324
Esp3I	CGTCTC	1 cut(s)	198
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	102, 386
GlaI	GCGC	2 cut(s)	40, 324
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	252
HaeII	RGCGCY	2 cut(s)	42, 326
HapII	CCGG	5 cut(s)	36, 42, 210, 320, 382
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	41, 325
Hin1I	GRCGYC	3 cut(s)	39, 207, 323
Hin6I	GCGC	2 cut(s)	39, 323
HinP1I	GCGC	2 cut(s)	39, 323
HpaII	CCGG	5 cut(s)	36, 42, 210, 320, 382
Hpy188I	TCNGA	3 cut(s)	25, 203, 309
Hpy188III	TCNNGA	2 cut(s)	181, 269
HpyCH4IV	ACGT	2 cut(s)	122, 406
HpyCH4V	TGCA	2 cut(s)	30, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 320
HpySE526I	ACGT	2 cut(s)	122, 406
Hsp92I	GRCGYC	3 cut(s)	39, 207, 323
HspAI	GCGC	2 cut(s)	39, 323
KasI	GGCGCC	2 cut(s)	38, 322
KroI	GCCGGC	2 cut(s)	41, 209
KroNI	GCCGGC	2 cut(s)	43, 211
Kzo9I	GATC	1 cut(s)	183
LpnPI	CCDG	9 cut(s)	49, 55, 83, 152, 223, 282, 333, 339, 395
MaeI	CTAG	2 cut(s)	102, 386
MaeII	ACGT	2 cut(s)	122, 406
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	5 cut(s)	109, 250, 283, 289, 393
MluCI	AATT	2 cut(s)	136, 420
Mly113I	GGCGCC	2 cut(s)	39, 323
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	7 cut(s)	27, 94, 157, 187, 257, 311, 378
MroNI	GCCGGC	2 cut(s)	41, 209
MspI	CCGG	5 cut(s)	36, 42, 210, 320, 382
Mva1269I	GAATGC	2 cut(s)	32, 316
MwoI	GCNNNNNNNGC	2 cut(s)	36, 320
NaeI	GCCGGC	2 cut(s)	43, 211
NarI	GGCGCC	2 cut(s)	39, 323
NdeII	GATC	1 cut(s)	183
NgoMIV	GCCGGC	2 cut(s)	41, 209
NheI	GCTAGC	2 cut(s)	101, 385
NlaIV	GGNNCC	2 cut(s)	40, 324
NmuCI	GTSAC	1 cut(s)	216
PctI	GAATGC	2 cut(s)	32, 316
PdiI	GCCGGC	2 cut(s)	43, 211
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	161
Ple19I	CGATCG	1 cut(s)	186
PluTI	GGCGCC	2 cut(s)	42, 326
PspN4I	GGNNCC	2 cut(s)	40, 324
PvuI	CGATCG	1 cut(s)	186
RsaI	GTAC	2 cut(s)	56, 340
RsaNI	GTAC	2 cut(s)	55, 339
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	183
SetI	ASST	5 cut(s)	107, 125, 198, 391, 409
SfoI	GGCGCC	2 cut(s)	40, 324
Sse9I	AATT	2 cut(s)	136, 420
SsiI	CCGC	4 cut(s)	70, 159, 162, 354
SspDI	GGCGCC	2 cut(s)	38, 322
SspMI	CTAG	2 cut(s)	102, 386
TaiI	ACGT	2 cut(s)	125, 409
TaqI	TCGA	4 cut(s)	59, 182, 186, 343
TasI	AATT	2 cut(s)	136, 420
TatI	WGTACW	2 cut(s)	54, 338
TauI	GCSGC	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspGWI	ACGGA	4 cut(s)	81, 118, 365, 402
Van91I	CCANNNNNTGG	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	2 cut(s)	102, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.