Rmu_sc0010695.1_g000003

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010695.1
OG0001606
Physical Location & Seq
Reverse (-)
4951 .. 5541
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010695.1_g000003.1.cds

Sequence Viewer

Length: 513 bp
atgggtcttcgtcttcctctattagaatgcaactccggcgctggcagagtgctgtacaagaagcctgtctgcttcaagcaaccctccactccgtttccaactagcttctccacattcttcacgttctccatcagcaatttgaacccctcctcgatctgcgacgggctgacttttatcatctggccagatgatgaggttgtcggagacgccgacgagttcttggggctccaaagcgtggaggacccaggttcgggttccgggtcgagcttcgtggcggtgaacctcgtgaattgctggatccaattcggcgggtcgagtcggtacgtcaaagacttgggtgtttctgggtgtttaggatctgggttgtttatgggtgtttatgatctgggttgtgtgttgttattgctcgatctgatctgggtgtttctgatcattcgtaatatgttggatgacgatagtgaggtggcttattggtgggagtggtggaggatgaggaggaggagaggtggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

170

Amino Acids

18.91

Weight (kDa)

4.62

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 235
AciI CCGC 2 cut(s) 275, 309
AclWI GGATC 3 cut(s) 292, 305, 364
AcoI YGGCCR 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 56, 323
AfiI CCNNNNNNNGG 3 cut(s) 235, 250, 251
AgsI TTSAA 2 cut(s) 76, 142
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 105, 267
AluI AGCT 2 cut(s) 105, 267
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 3 cut(s) 292, 305, 364
AoxI GGCC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 289
AvaII GGWCC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 184
BamHI GGATCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 228
BauI CACGAG 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 5
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 246, 259
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 4 cut(s) 227, 243, 256, 299
BmrFI CCNGG 2 cut(s) 246, 259
BpiI GAAGAC 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 1 cut(s) 490
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 250, 251
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 454, 495
BseLI CCNNNNNNNGG 3 cut(s) 235, 250, 251
BseRI GAGGAG 3 cut(s) 139, 508, 511
BshFI GGCC 1 cut(s) 184
BsiSI CCGG 2 cut(s) 36, 258
BslI CCNNNNNNNGG 3 cut(s) 235, 250, 251
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 7 cut(s) 153, 297, 356, 382, 409, 414, 429
BspACI CCGC 2 cut(s) 275, 309
BspANI GGCC 1 cut(s) 184
BspLI GGNNCC 4 cut(s) 227, 243, 256, 299
BspPI GGATC 3 cut(s) 292, 305, 364
BsrGI TGTACA 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 7 cut(s) 153, 297, 356, 382, 409, 414, 429
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 246
BstACI GRCGYC 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 43
BstF5I GGATG 2 cut(s) 454, 495
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 7 cut(s) 156, 300, 359, 385, 412, 417, 432
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 7 cut(s) 153, 297, 356, 382, 409, 414, 429
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 244, 257
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 2 cut(s) 297, 356
BstYI RGATCY 2 cut(s) 297, 356
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 454, 495
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 55, 322
CviJI RGCY 8 cut(s) 64, 105, 166, 184, 226, 267, 467, 510
CviKI_1 RGCY 8 cut(s) 64, 105, 166, 184, 226, 267, 467, 510
CviQI GTAC 2 cut(s) 55, 322
DpnI GATC 7 cut(s) 155, 299, 358, 384, 411, 416, 431
DpnII GATC 7 cut(s) 153, 297, 356, 382, 409, 414, 429
EaeI YGGCCR 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 198
FaiI YATR 3 cut(s) 371, 381, 443
FauI CCCGC 1 cut(s) 302
FbaI TGATCA 1 cut(s) 429
FokI GGATG 2 cut(s) 461, 502
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 1 cut(s) 184
HapII CCGG 2 cut(s) 36, 258
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 207
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 1 cut(s) 316
HpaII CCGG 2 cut(s) 36, 258
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 203, 414, 429
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 2 cut(s) 164, 215
HpyCH4IV ACGT 2 cut(s) 122, 324
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpySE526I ACGT 2 cut(s) 122, 324
Hsp92I GRCGYC 1 cut(s) 207
HspAI GCGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 7 cut(s) 153, 297, 356, 382, 409, 414, 429
LmnI GCTCC 1 cut(s) 231
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 122, 324
MalI GATC 7 cut(s) 155, 299, 358, 384, 411, 416, 431
MboI GATC 7 cut(s) 153, 297, 356, 382, 409, 414, 429
MboII GAAGA 2 cut(s) 5, 109
MflI RGATCY 2 cut(s) 297, 356
MhlI GDGCHC 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 3 cut(s) 136, 289, 302
MluNI TGGCCA 1 cut(s) 184
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 3 cut(s) 122, 181, 426
Mox20I TGGCCA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 184
Msp20I TGGCCA 1 cut(s) 184
MspI CCGG 2 cut(s) 36, 258
MspR9I CCNGG 2 cut(s) 246, 259
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 259
NdeII GATC 7 cut(s) 153, 297, 356, 382, 409, 414, 429
NlaIV GGNNCC 4 cut(s) 227, 243, 256, 299
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 235
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 4 cut(s) 227, 243, 256, 299
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 2 cut(s) 297, 356
RsaI GTAC 2 cut(s) 56, 323
RsaNI GTAC 2 cut(s) 55, 322
Sau3AI GATC 7 cut(s) 153, 297, 356, 382, 409, 414, 429
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 246, 259
SduI GDGCHC 1 cut(s) 228
SetI ASST 9 cut(s) 107, 125, 198, 250, 269, 285, 327, 465, 508
SinI GGWCC 1 cut(s) 241
Sse9I AATT 3 cut(s) 136, 289, 302
SsiI CCGC 2 cut(s) 275, 309
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 244, 257
TaiI ACGT 2 cut(s) 125, 327
TaqI TCGA 4 cut(s) 152, 263, 314, 408
TasI AATT 3 cut(s) 136, 289, 302
TatI WGTACW 1 cut(s) 54
TspGWI ACGGA 1 cut(s) 81
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 241
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.