RchiOBHm_Chr3g0471751

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001606
Physical Location & Seq
Reverse (-)
17603138 .. 17603845
708 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43749

Sequence Viewer

Length: 708 bp
ATGTTAGCAATAACAGAATTCGACTTCGGAACCCTCACCCTCAGCAGCCTCAAGCTCCTCGGCGACGTCCACTTGAATAATGGCAGCGTACGTCTCACTCGCGACCTTGCCGTCCCCAACTTTGGCGCCGGCAGAGTGCTGTACTCGAAGCCCGTCCGCTTCAAGCAACCCTCCACTCCATTTCCGGCTAGCTTCTCCACATTCTTCACGTTCTCCGTCAACAATTTGAACCCATCCTCGATCTGCGGCGGGCTGGCTTTTATCATCTCGCCGAACGATGAGGTCGTCGGAGACGCCGACGGGTTCTTGGGGCTCCAGAGCGTGGAGGACCCGGGTTCGGGTTCTGGGTCGAGCTTCGTGGCGGTGGAGTTTGACACGCTCATGGATGTGGAGTTCAAGGACATTAATAGCAACCACGTAGGCCTAGATCTCAACTCCATGGTTTCATCACAGGTCAGCGATCTTGGCGCTACGGATATTGATCTCAAGAGCGGGGACCTCGTGAATTGCTGGATCGAATTCAGCGGATCGATCTGTGGAGAGGGAGAGAGAGCTAGAAAAGCAGAAAAAATAAATAAAAAAGAGAGAGAAATTAAAAAAAGACAGAGAAAAAAATATAAAAAGGGATCTTGGGGTAGAATAGTCATTTTAGACCTGTTTTGGACCTGTTGTGTGAGAATTAGAGAGAATAAGGATTATCCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

235

Amino Acids

25.85

Weight (kDa)

6.17

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 6 - 177 2e-39 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AatII GACGTC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 492
AccII CGCG 1 cut(s) 102
AciI CCGC 6 cut(s) 157, 246, 249, 362, 492, 525
AclWI GGATC 3 cut(s) 521, 535, 634
AcsI RAATTY 2 cut(s) 17, 518
AcyI GRCGYC 3 cut(s) 66, 126, 294
AfaI GTAC 2 cut(s) 90, 143
AfiI CCNNNNNNNGG 4 cut(s) 122, 322, 337, 338
AgsI TTSAA 4 cut(s) 76, 163, 229, 397
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 4 cut(s) 55, 192, 354, 554
AluI AGCT 4 cut(s) 55, 192, 354, 554
Alw26I GTCTC 2 cut(s) 98, 285
AlwI GGATC 3 cut(s) 521, 535, 634
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 2 cut(s) 45, 84
ApoI RAATTY 2 cut(s) 17, 518
AseI ATTAAT 1 cut(s) 405
AspLEI GCGC 2 cut(s) 128, 470
AspS9I GGNCC 3 cut(s) 328, 496, 663
AsuC2I CCSGG 2 cut(s) 332, 333
AsuHPI GGTGA 1 cut(s) 28
AsuNHI GCTAGC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 3 cut(s) 328, 496, 663
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 57, 96
BccI CCATC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 95
BcnI CCSGG 2 cut(s) 332, 333
BcoDI GTCTC 2 cut(s) 98, 285
BfaI CTAG 3 cut(s) 189, 425, 555
BfoI RGCGCY 2 cut(s) 129, 471
BglII AGATCT 1 cut(s) 427
BisI GCNGC 3 cut(s) 46, 85, 247
BlsI GCNGC 3 cut(s) 47, 86, 248
Bme1390I CCNGG 2 cut(s) 332, 333
Bme18I GGWCC 3 cut(s) 328, 496, 663
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 328, 496, 663
BmiI GGNNCC 5 cut(s) 31, 127, 314, 330, 497
BmrFI CCNGG 2 cut(s) 332, 333
BmtI GCTAGC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 35, 470
BpuMI CCSGG 2 cut(s) 332, 333
Bsa29I ATCGAT 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 418
BsaBI GATNNNNATC 1 cut(s) 480
BsaHI GRCGYC 3 cut(s) 66, 126, 294
BsaJI CCNNGG 3 cut(s) 58, 331, 438
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 322, 337, 338
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 701
Bse8I GATNNNNATC 1 cut(s) 480
BseCI ATCGAT 1 cut(s) 530
BseDI CCNNGG 3 cut(s) 58, 331, 438
BseGI GGATG 2 cut(s) 233, 391
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 4 cut(s) 122, 322, 337, 338
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 701
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 57, 96
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 423
BshNI GGYRCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 530
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 3 cut(s) 129, 185, 332
BsiWI CGTACG 1 cut(s) 88
BslFI GGGAC 2 cut(s) 98, 509
BslI CCNNNNNNNGG 4 cut(s) 122, 322, 337, 338
BsmAI GTCTC 2 cut(s) 98, 285
BsmBI CGTCTC 2 cut(s) 98, 285
BsmFI GGGAC 2 cut(s) 98, 509
BsnI GGCC 1 cut(s) 423
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 8 cut(s) 240, 427, 460, 481, 513, 527, 531, 626
Bsp19I CCATGG 1 cut(s) 438
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 6 cut(s) 157, 246, 249, 362, 492, 525
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 54
BspDI ATCGAT 1 cut(s) 530
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 5 cut(s) 31, 127, 314, 330, 497
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 3 cut(s) 521, 535, 634
BspT107I GGYRCC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 701
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 58, 331, 438
BssMI GATC 8 cut(s) 240, 427, 460, 481, 513, 527, 531, 626
BssNI GRCGYC 3 cut(s) 66, 126, 294
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 500
BstACI GRCGYC 3 cut(s) 66, 126, 294
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 4 cut(s) 130, 190, 251, 255
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 233, 391
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 2 cut(s) 129, 471
BstHHI GCGC 2 cut(s) 128, 470
BstKTI GATC 8 cut(s) 243, 430, 463, 484, 516, 530, 534, 629
BstMAI GTCTC 2 cut(s) 98, 285
BstMBI GATC 8 cut(s) 240, 427, 460, 481, 513, 527, 531, 626
BstMWI GCNNNNNNNGC 2 cut(s) 465, 560
BstSCI CCNGG 2 cut(s) 330, 331
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 57, 96
BstX2I RGATCY 2 cut(s) 427, 626
BstYI RGATCY 2 cut(s) 427, 626
Bsu15I ATCGAT 1 cut(s) 530
BsuRI GGCC 1 cut(s) 423
BsuTUI ATCGAT 1 cut(s) 530
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 233, 391
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 4 cut(s) 130, 190, 251, 255
CfoI GCGC 2 cut(s) 128, 470
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 328, 496, 663
Cfr9I CCCGGG 1 cut(s) 331
ClaI ATCGAT 1 cut(s) 530
CseI GACGC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 89, 142
CviAII CATG 2 cut(s) 382, 439
CviQI GTAC 2 cut(s) 89, 142
DdeI CTNAG 1 cut(s) 41
DinI GGCGCC 1 cut(s) 127
DpnI GATC 8 cut(s) 242, 429, 462, 483, 515, 529, 533, 628
DpnII GATC 8 cut(s) 240, 427, 460, 481, 513, 527, 531, 626
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 3 cut(s) 328, 496, 663
Eco88I CYCGRG 1 cut(s) 331
EcoO109I RGGNCCY 2 cut(s) 328, 496
EcoRI GAATTC 2 cut(s) 17, 518
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 315
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 438
Esp3I CGTCTC 2 cut(s) 98, 285
FaeI CATG 2 cut(s) 385, 442
FaiI YATR 3 cut(s) 383, 440, 618
FaqI GGGAC 2 cut(s) 98, 509
FatI CATG 2 cut(s) 381, 438
FauI CCCGC 2 cut(s) 242, 485
Fnu4HI GCNGC 3 cut(s) 46, 85, 247
FokI GGATG 2 cut(s) 220, 398
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 3 cut(s) 46, 85, 247
FspBI CTAG 3 cut(s) 189, 425, 555
GlaI GCGC 2 cut(s) 127, 469
GluI GCNGC 3 cut(s) 46, 85, 247
GsuI CTGGAG 1 cut(s) 299
HaeII RGCGCY 2 cut(s) 129, 471
HaeIII GGCC 1 cut(s) 423
HapII CCGG 3 cut(s) 129, 185, 332
HgaI GACGC 1 cut(s) 302
HhaI GCGC 2 cut(s) 128, 470
Hin1I GRCGYC 3 cut(s) 66, 126, 294
Hin1II CATG 2 cut(s) 385, 442
Hin6I GCGC 2 cut(s) 126, 468
HinP1I GCGC 2 cut(s) 126, 468
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HpaII CCGG 3 cut(s) 129, 185, 332
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 70, 220
Hpy188I TCNGA 2 cut(s) 29, 290
Hpy188III TCNNGA 4 cut(s) 101, 316, 487, 502
Hpy8I GTNNAC 2 cut(s) 70, 220
Hpy99I CGWCG 3 cut(s) 68, 290, 302
HpyCH4IV ACGT 4 cut(s) 66, 91, 209, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 465, 560
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 4 cut(s) 66, 91, 209, 417
Hsp92I GRCGYC 3 cut(s) 66, 126, 294
Hsp92II CATG 2 cut(s) 385, 442
HspAI GCGC 2 cut(s) 126, 468
KasI GGCGCC 1 cut(s) 125
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 8 cut(s) 240, 427, 460, 481, 513, 527, 531, 626
LmnI GCTCC 2 cut(s) 60, 318
Lsp1109I GCAGC 2 cut(s) 57, 96
MaeI CTAG 3 cut(s) 189, 425, 555
MaeII ACGT 4 cut(s) 66, 91, 209, 417
MalI GATC 8 cut(s) 242, 429, 462, 483, 515, 529, 533, 628
MbiI CCGCTC 1 cut(s) 492
MboI GATC 8 cut(s) 240, 427, 460, 481, 513, 527, 531, 626
MboII GAAGA 1 cut(s) 196
MflI RGATCY 2 cut(s) 427, 626
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 6 cut(s) 17, 223, 505, 518, 591, 678
Mly113I GGCGCC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 268
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 3 cut(s) 405, 594, 706
MslI CAYNNNNRTG 2 cut(s) 380, 386
MspA1I CMGCKG 1 cut(s) 525
MspI CCGG 3 cut(s) 129, 185, 332
MspR9I CCNGG 2 cut(s) 332, 333
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 465, 560
NaeI GCCGGC 1 cut(s) 130
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 2 cut(s) 332, 333
NcoI CCATGG 1 cut(s) 438
NdeII GATC 8 cut(s) 240, 427, 460, 481, 513, 527, 531, 626
NgoMIV GCCGGC 1 cut(s) 128
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 2 cut(s) 385, 442
NlaIV GGNNCC 5 cut(s) 31, 127, 314, 330, 497
NmeAIII GCCGAG 1 cut(s) 39
NruI TCGCGA 1 cut(s) 102
PceI AGGCCT 1 cut(s) 423
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 294
PdiI GCCGGC 1 cut(s) 130
Pfl23II CGTACG 1 cut(s) 88
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 3 cut(s) 47, 86, 248
PluTI GGCGCC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 418
PpuMI RGGWCCY 2 cut(s) 328, 496
PshBI ATTAAT 1 cut(s) 405
Psp5II RGGWCCY 2 cut(s) 328, 496
PspLI CGTACG 1 cut(s) 88
PspN4I GGNNCC 5 cut(s) 31, 127, 314, 330, 497
PspPI GGNCC 3 cut(s) 328, 496, 663
PspPPI RGGWCCY 2 cut(s) 328, 496
PsuI RGATCY 2 cut(s) 427, 626
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 2 cut(s) 90, 143
RsaNI GTAC 2 cut(s) 89, 142
RseI CAYNNNNRTG 2 cut(s) 380, 386
SaqAI TTAA 3 cut(s) 405, 594, 706
SatI GCNGC 3 cut(s) 46, 85, 247
Sau3AI GATC 8 cut(s) 240, 427, 460, 481, 513, 527, 531, 626
Sau96I GGNCC 3 cut(s) 328, 496, 663
ScrFI CCNGG 2 cut(s) 332, 333
SduI GDGCHC 1 cut(s) 315
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 3 cut(s) 328, 496, 663
SmaI CCCGGG 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 380, 386
SmlI CTYRAG 2 cut(s) 50, 485
SmoI CTYRAG 2 cut(s) 50, 485
Sse9I AATT 6 cut(s) 17, 223, 505, 518, 591, 678
SseBI AGGCCT 1 cut(s) 423
SsiI CCGC 6 cut(s) 157, 246, 249, 362, 492, 525
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 3 cut(s) 189, 425, 555
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 330, 331
StyI CCWWGG 1 cut(s) 438
TaiI ACGT 4 cut(s) 69, 94, 212, 420
TaqI TCGA 6 cut(s) 21, 146, 239, 350, 516, 530
TasI AATT 6 cut(s) 17, 223, 505, 518, 591, 678
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 3 cut(s) 405, 594, 706
Tru9I TTAA 3 cut(s) 405, 594, 706
TseI GCWGC 2 cut(s) 45, 84
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 2 cut(s) 205, 488
TspMI CCCGGG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 3 cut(s) 328, 496, 663
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 2 cut(s) 17, 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XmaI CCCGGG 1 cut(s) 331
XspI CTAG 3 cut(s) 189, 425, 555
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.