Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

37228298 .. 37228861

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG334000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCAACTCCGGTGCCGGCAGAGTGCTGTACTCGAAGCCCGTCCGCTTCAAGCAACCTCCACTCCGTTTCCGGATAGCTTCTCCACATTCTTCACGTTCTCCGTCAGCAATTTGAACCCCTCCTCGATCTGCGGCGGGCTGGCTTTTATCATCTGGCCAGACGATGAGGTTGTCGGAGACGCCGGCGGGTTCTTGAGGTTCCAAAGCGTGGAGGACCCGGGTTCGGGTTCCGGGTCGAGCTTTGTGGCGGTGAACCTCGTGAATTACTGGATCGAATTCGGCGGGTCGAGTCGGGTCTTCAACATATCTGTTTCGTATTCGAATCTCAAACCCAGAGACTCGCTCCTCTTCTTCCCTCTCGATCTTGATCAGTACGTCAACGACTTGGGTGTTTTTGGGTGTTTAGGATCTGGGTTGTTTATGGGTGTTTATGATCTGGGTTGTGTGTTGTTATTGCTCGATCTGATCTGGGTGTTTCTGATCATTCGTAATATGTTGGATGATGATAGTGAGGTGTCTTATTGGTGGGAGTGGTGGAGGATAAGGAGGAGGAGAGGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

187

Amino Acids

21.0

Weight (kDa)

4.46

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	22 - 85	4.3e-06	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	6 cut(s)	44, 132, 135, 186, 248, 282
AclWI	GGATC	2 cut(s)	278, 415
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	30, 374
AfiI	CCNNNNNNNGG	3 cut(s)	208, 223, 224
AgsI	TTSAA	3 cut(s)	50, 115, 301
AluBI	AGCT	2 cut(s)	78, 240
AluI	AGCT	2 cut(s)	78, 240
Alw26I	GTCTC	2 cut(s)	171, 330
AlwI	GGATC	2 cut(s)	278, 415
Ama87I	CYCGRG	1 cut(s)	217
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	3 cut(s)	218, 219, 232
AsuHPI	GGTGA	1 cut(s)	262
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	289
BclI	TGATCA	2 cut(s)	367, 480
BcnI	CCSGG	3 cut(s)	218, 219, 232
BcoDI	GTCTC	2 cut(s)	171, 330
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	3 cut(s)	218, 219, 232
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	4 cut(s)	14, 200, 216, 229
BmrFI	CCNGG	3 cut(s)	218, 219, 232
BpiI	GAAGAC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	214
BpuMI	CCSGG	3 cut(s)	218, 219, 232
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	2 cut(s)	9, 70
BsaXI	ACNNNNNCTCC	3 cut(s)	46, 76, 541
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 223, 224
Bse118I	RCCGGY	2 cut(s)	15, 182
Bse1I	ACTGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	505
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	3 cut(s)	208, 223, 224
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	3 cut(s)	112, 335, 562
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	6 cut(s)	10, 16, 71, 183, 218, 231
BslI	CCNNNNNNNGG	3 cut(s)	208, 223, 224
BsmAI	GTCTC	2 cut(s)	171, 330
BsmBI	CGTCTC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	217
Bsp119I	TTCGAA	1 cut(s)	320
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	9 cut(s)	126, 270, 361, 367, 407, 433, 460, 465, 480
BspACI	CCGC	6 cut(s)	44, 132, 135, 186, 248, 282
BspANI	GGCC	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	14, 200, 216, 229
BspPI	GGATC	2 cut(s)	278, 415
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	15, 182
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	2 cut(s)	15, 182
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	9 cut(s)	126, 270, 361, 367, 407, 433, 460, 465, 480
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	17, 137, 141, 184
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	9 cut(s)	129, 273, 364, 370, 410, 436, 463, 468, 483
BstMAI	GTCTC	2 cut(s)	171, 330
BstMBI	GATC	9 cut(s)	126, 270, 361, 367, 407, 433, 460, 465, 480
BstSCI	CCNGG	3 cut(s)	216, 217, 230
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	505
Cac8I	GCNNGC	4 cut(s)	17, 137, 141, 184
Cfr10I	RCCGGY	2 cut(s)	15, 182
Cfr13I	GGNCC	1 cut(s)	214
Cfr9I	CCCGGG	1 cut(s)	217
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	29, 373
CviJI	RGCY	7 cut(s)	38, 78, 139, 143, 157, 240, 561
CviKI_1	RGCY	7 cut(s)	38, 78, 139, 143, 157, 240, 561
CviQI	GTAC	2 cut(s)	29, 373
DpnI	GATC	9 cut(s)	128, 272, 363, 369, 409, 435, 462, 467, 482
DpnII	GATC	9 cut(s)	126, 270, 361, 367, 407, 433, 460, 465, 480
EaeI	YGGCCR	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	171
FaiI	YATR	4 cut(s)	305, 422, 432, 494
FauI	CCCGC	3 cut(s)	128, 179, 275
FbaI	TGATCA	2 cut(s)	367, 480
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	6 cut(s)	10, 16, 71, 183, 218, 231
HgaI	GACGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	3 cut(s)	289, 322, 338
HpaII	CCGG	6 cut(s)	10, 16, 71, 183, 218, 231
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	253, 379
Hpy188I	TCNGA	3 cut(s)	176, 465, 480
Hpy188III	TCNNGA	5 cut(s)	71, 193, 259, 359, 365
Hpy8I	GTNNAC	2 cut(s)	253, 379
HpyCH4IV	ACGT	2 cut(s)	95, 375
HpyCH4V	TGCA	1 cut(s)	4
HpySE526I	ACGT	2 cut(s)	95, 375
Hsp92I	GRCGYC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	70
KroI	GCCGGC	2 cut(s)	15, 182
KroNI	GCCGGC	2 cut(s)	17, 184
Ksp22I	TGATCA	2 cut(s)	367, 480
Kzo9I	GATC	9 cut(s)	126, 270, 361, 367, 407, 433, 460, 465, 480
LmnI	GCTCC	1 cut(s)	348
MaeII	ACGT	2 cut(s)	95, 375
MalI	GATC	9 cut(s)	128, 272, 363, 369, 409, 435, 462, 467, 482
MboI	GATC	9 cut(s)	126, 270, 361, 367, 407, 433, 460, 465, 480
MboII	GAAGA	4 cut(s)	82, 289, 340, 343
MflI	RGATCY	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	3 cut(s)	109, 262, 275
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	298, 332
MmeI	TCCRAC	2 cut(s)	154, 477
Mox20I	TGGCCA	1 cut(s)	157
MreI	CGCCGGCG	1 cut(s)	182
MroI	TCCGGA	1 cut(s)	70
MroNI	GCCGGC	2 cut(s)	15, 182
MscI	TGGCCA	1 cut(s)	157
Msp20I	TGGCCA	1 cut(s)	157
MspI	CCGG	6 cut(s)	10, 16, 71, 183, 218, 231
MspR9I	CCNGG	3 cut(s)	218, 219, 232
NaeI	GCCGGC	2 cut(s)	17, 184
NciI	CCSGG	3 cut(s)	218, 219, 232
NdeII	GATC	9 cut(s)	126, 270, 361, 367, 407, 433, 460, 465, 480
NgoMIV	GCCGGC	2 cut(s)	15, 182
NlaIV	GGNNCC	4 cut(s)	14, 200, 216, 229
NspV	TTCGAA	1 cut(s)	320
PdiI	GCCGGC	2 cut(s)	17, 184
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	2 cut(s)	297, 332
PpsI	GAGTC	2 cut(s)	297, 332
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
PspN4I	GGNNCC	4 cut(s)	14, 200, 216, 229
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	2 cut(s)	30, 374
RsaNI	GTAC	2 cut(s)	29, 373
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	9 cut(s)	126, 270, 361, 367, 407, 433, 460, 465, 480
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	298, 332
ScrFI	CCNGG	3 cut(s)	218, 219, 232
SfuI	TTCGAA	1 cut(s)	320
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	214
SmaI	CCCGGG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	3 cut(s)	109, 262, 275
SsiI	CCGC	6 cut(s)	44, 132, 135, 186, 248, 282
StyD4I	CCNGG	3 cut(s)	216, 217, 230
TaiI	ACGT	2 cut(s)	98, 378
TaqI	TCGA	8 cut(s)	33, 125, 236, 273, 287, 320, 360, 459
TasI	AATT	3 cut(s)	109, 262, 275
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	322
TspGWI	ACGGA	2 cut(s)	54, 91
TspMI	CCCGGG	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	275
XmaI	CCCGGG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.