Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

46391068 .. 46391908

Gene Structure 841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG249600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGACAACACCCAAAGGCAACTTGATAATCACTGTGCTGCCCTCCGCCGTAAAATAACTAAAATTAAATGGTTATTTATTTGTGGAGTACCCGTGGTAATTATTTTTCTTATCTTCTTGATGAGTTTGGTCCTCACCAAGAGCCCGAATAACGTCAACTGTCATGTAACCAGTGCATTGCTCACCGATTCCAACCTCACCCTTGAGATCACTATTCGAAACCCGAACAGTTTCTACCGTGTCCACCATGATCACATTGACATTACTGCCAACTACAAAAACCAGACGTTGGGTTCGACATTGAATTATGCCTCCTTCTCCCAAGGACGTAATCGCGAAACACGGCTAACACCGTCCTTTAACGGGCTGATCCTTGGCGGAGGCGATGACCTCCGCGGGTCGAACAACTGCGGAAATAACTATTACGATATTATTGTCAAGCTCAACATGCAAGACGAGTACAAGAAACAGATTGTTCCCAAGAAGAGATTTCAAAGGAATTTGGAGTATACGTGCGAGTTGAAGGTTCCTTCTGGCAGTGGGAGTAGCTTCAACACCACCCTGTGCCGCTATCTACGAATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

195

Amino Acids

22.26

Weight (kDa)

9.48

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	70 - 117	7.9e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	509
AccII	CGCG	2 cut(s)	336, 396
AciI	CCGC	6 cut(s)	46, 378, 394, 396, 411, 568
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	2 cut(s)	499, 579
AdeI	CACNNNGTG	1 cut(s)	564
AfaI	GTAC	2 cut(s)	90, 461
AfiI	CCNNNNNNNGG	2 cut(s)	289, 363
AgsI	TTSAA	4 cut(s)	304, 494, 523, 553
AluBI	AGCT	2 cut(s)	442, 549
AluI	AGCT	2 cut(s)	442, 549
AlwI	GGATC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	499, 579
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	3 cut(s)	127, 175, 190
AsuII	TTCGAA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	33, 359
BclI	TGATCA	1 cut(s)	250
BisI	GCNGC	2 cut(s)	39, 568
BlsI	GCNGC	2 cut(s)	40, 569
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	513
BsaJI	CCNNGG	4 cut(s)	93, 322, 373, 394
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 363
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	176
BseDI	CCNNGG	4 cut(s)	93, 322, 373, 394
BseLI	CCNNNNNNNGG	2 cut(s)	289, 363
BseMI	GCAATG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	336, 396
BslI	CCNNNNNNNGG	2 cut(s)	289, 363
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	207, 250, 369
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	6 cut(s)	46, 378, 394, 396, 411, 568
BspFNI	CGCG	2 cut(s)	336, 396
BspLI	GGNNCC	1 cut(s)	528
BspPI	GGATC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	4 cut(s)	93, 322, 373, 394
BssMI	GATC	3 cut(s)	207, 250, 369
BssNAI	GTATAC	1 cut(s)	510
BssT1I	CCWWGG	2 cut(s)	322, 373
Bst1107I	GTATAC	1 cut(s)	510
Bst4CI	ACNGT	5 cut(s)	35, 161, 230, 239, 354
Bst6I	CTCTTC	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	513
BstBI	TTCGAA	1 cut(s)	217
BstDSI	CCRYGG	2 cut(s)	93, 394
BstFNI	CGCG	2 cut(s)	336, 396
BstKTI	GATC	3 cut(s)	210, 253, 372
BstMBI	GATC	3 cut(s)	207, 250, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	451
BstUI	CGCG	2 cut(s)	336, 396
BstV1I	GCAGC	1 cut(s)	25
BstZ17I	GTATAC	1 cut(s)	510
BtgI	CCRYGG	2 cut(s)	93, 394
BtgZI	GCGATG	1 cut(s)	399
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	3 cut(s)	31, 178, 544
BtuMI	TCGCGA	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	130
Cfr42I	CCGCGG	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	89, 460
CviAII	CATG	4 cut(s)	164, 248, 448, 585
CviJI	RGCY	5 cut(s)	144, 346, 367, 442, 549
CviKI_1	RGCY	5 cut(s)	144, 346, 367, 442, 549
CviQI	GTAC	2 cut(s)	89, 460
DpnI	GATC	3 cut(s)	209, 252, 371
DpnII	GATC	3 cut(s)	207, 250, 369
DraIII	CACNNNGTG	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
EciI	GGCGGA	2 cut(s)	35, 393
Eco130I	CCWWGG	2 cut(s)	322, 373
Eco24I	GRGCYC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	579
EcoT14I	CCWWGG	2 cut(s)	322, 373
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	2 cut(s)	322, 373
FaeI	CATG	4 cut(s)	167, 251, 451, 588
FaiI	YATR	6 cut(s)	165, 249, 309, 449, 510, 586
FatI	CATG	4 cut(s)	163, 247, 447, 584
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	2 cut(s)	39, 568
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	39, 568
GluI	GCNGC	2 cut(s)	39, 568
Hin1II	CATG	4 cut(s)	167, 251, 451, 588
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	188
HphI	GGTGA	3 cut(s)	127, 175, 190
Hpy166II	GTNNAC	3 cut(s)	157, 244, 510
Hpy188III	TCNNGA	2 cut(s)	118, 335
Hpy8I	GTNNAC	3 cut(s)	157, 244, 510
HpyAV	CCTTC	3 cut(s)	325, 517, 540
HpyCH4III	ACNGT	5 cut(s)	35, 161, 230, 239, 354
HpyCH4IV	ACGT	4 cut(s)	153, 287, 328, 512
HpyCH4V	TGCA	2 cut(s)	176, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	448
HpySE526I	ACGT	4 cut(s)	153, 287, 328, 512
Hsp92II	CATG	4 cut(s)	167, 251, 451, 588
Ksp22I	TGATCA	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	207, 250, 369
LpnPI	CCDG	4 cut(s)	184, 296, 519, 575
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	4 cut(s)	153, 287, 328, 512
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	209, 252, 371
MboI	GATC	3 cut(s)	207, 250, 369
MboII	GAAGA	2 cut(s)	106, 496
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	5 cut(s)	63, 99, 304, 499, 579
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	53, 143, 206, 322, 374, 401
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	66, 360
MspA1I	CMGCKG	1 cut(s)	396
MvnI	CGCG	2 cut(s)	336, 396
MwoI	GCNNNNNNNGC	1 cut(s)	448
NdeII	GATC	3 cut(s)	207, 250, 369
NlaIII	CATG	4 cut(s)	167, 251, 451, 588
NlaIV	GGNNCC	1 cut(s)	528
NruI	TCGCGA	1 cut(s)	336
NspI	RCATGY	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	40, 569
Ppu21I	YACGTR	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	1 cut(s)	130
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	2 cut(s)	90, 461
RsaNI	GTAC	2 cut(s)	89, 460
SacII	CCGCGG	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	66, 360
SatI	GCNGC	2 cut(s)	39, 568
Sau3AI	GATC	3 cut(s)	207, 250, 369
Sau96I	GGNCC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	9 cut(s)	156, 198, 290, 331, 393, 444, 515, 528, 551
Sfr303I	CCGCGG	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	63, 99, 304, 499, 579
SsiI	CCGC	6 cut(s)	46, 378, 394, 396, 411, 568
StyI	CCWWGG	2 cut(s)	322, 373
TaaI	ACNGT	5 cut(s)	35, 161, 230, 239, 354
TaiI	ACGT	4 cut(s)	156, 290, 331, 515
TaqI	TCGA	3 cut(s)	217, 296, 401
TasI	AATT	5 cut(s)	63, 99, 304, 499, 579
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	66, 360
Tru9I	TTAA	2 cut(s)	66, 360
TscAI	CASTG	3 cut(s)	38, 178, 544
TseI	GCWGC	1 cut(s)	38
TspRI	CASTG	3 cut(s)	38, 178, 544
Van91I	CCANNNNNTGG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	2 cut(s)	499, 579
XceI	RCATGY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.