Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005385.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

100658 .. 101401

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005385.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgggtcttcgtcttcctctatcagaatgcaactccggcgccggcagagtgctgtactcgaagcccgtccgcttcaagcaaccctccactccttttccggctagcttctccacattcttcacgttctccgtcagcaatttgaacccctcctcgatctgcggcgggcaggctttgatcatctggccagacgatgaggttgtcggagtgacccgtgatccagatccagacccagcaccatacccaaaactggatccgacctggatcccaaatccggatcttcaaaccagtttgcaccatgccgtcacgcggggtcttcagcccagaaaagcttccgtccatcgactcaacatccgaagatctgtcgccctccgcacccctttagatgccgcccatatcagccttccagacgcaaatccaagtctgtcgtacacgaccacgaccagggacgaggtttcctgcctccattgctggctgacaaccgctcgacctgctcaccaccgcgtccaccatacgacccctattcaccaccagaatcggaaagctattccaccatccgatcctccaatggcttcgagaatcacagtaacaactccgccgcaaggaagagaaacgaggcaaacaaccttcgccgctacactagatccccaccacgccaccggagtcacccaagtcctccatattcatggaggaagtttcagaagcaaaccgcgagggcggctgctctcaaccctagcagagcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

247

Amino Acids

27.21

Weight (kDa)

10.1

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	482
AccII	CGCG	3 cut(s)	307, 501, 709
AccIII	TCCGGA	1 cut(s)	271
AclWI	GGATC	9 cut(s)	209, 215, 245, 256, 258, 269, 282, 551, 635
AcoI	YGGCCR	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	56, 428
AfeI	AGCGCT	1 cut(s)	740
AfiI	CCNNNNNNNGG	5 cut(s)	247, 271, 306, 441, 599
AgsI	TTSAA	3 cut(s)	76, 142, 281
AjnI	CCWGG	2 cut(s)	257, 440
AluBI	AGCT	3 cut(s)	105, 329, 542
AluI	AGCT	3 cut(s)	105, 329, 542
AlwI	GGATC	9 cut(s)	209, 215, 245, 256, 258, 269, 282, 551, 635
Aor13HI	TCCGGA	1 cut(s)	271
Aor51HI	AGCGCT	1 cut(s)	740
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	718
Asp700I	GAANNNNTTC	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	41, 741
AsuHPI	GGTGA	3 cut(s)	485, 515, 655
AsuNHI	GCTAGC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	184
BamHI	GGATCC	2 cut(s)	250, 261
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	5, 305
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	2 cut(s)	345, 559
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	259, 442
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	4 cut(s)	102, 638, 731, 742
BfoI	RGCGCY	2 cut(s)	42, 742
BfuAI	ACCTGC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	6 cut(s)	160, 387, 596, 630, 716, 719
BlsI	GCNGC	6 cut(s)	161, 388, 597, 631, 717, 720
Bme1390I	CCNGG	2 cut(s)	259, 442
BmiI	GGNNCC	3 cut(s)	40, 252, 263
BmrFI	CCNGG	2 cut(s)	259, 442
BmsI	GCATC	1 cut(s)	373
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	5, 305
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	2 cut(s)	271, 656
Bsc4I	CCNNNNNNNGG	5 cut(s)	247, 271, 306, 441, 599
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	252, 285
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	259, 442
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	348, 551
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	5 cut(s)	247, 271, 306, 441, 599
BseMI	GCAATG	1 cut(s)	463
BseNI	ACTGG	2 cut(s)	252, 285
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	705
BseYI	CCCAGC	1 cut(s)	229
Bsh1236I	CGCG	3 cut(s)	307, 501, 709
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	5 cut(s)	36, 42, 98, 272, 657
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	5 cut(s)	247, 271, 306, 441, 599
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	184
Bsp13I	TCCGGA	1 cut(s)	271
BspANI	GGCC	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	271
BspFNI	CGCG	3 cut(s)	307, 501, 709
BspLI	GGNNCC	3 cut(s)	40, 252, 263
BspMI	ACCTGC	1 cut(s)	496
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	9 cut(s)	209, 215, 245, 256, 258, 269, 282, 551, 635
BspT107I	GGYRCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	252, 285
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	441
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	259, 442
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	598
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 470
BstF5I	GGATG	2 cut(s)	348, 551
BstFNI	CGCG	3 cut(s)	307, 501, 709
BstH2I	RGCGCY	2 cut(s)	42, 742
BstHHI	GCGC	2 cut(s)	41, 741
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 465, 488, 715
BstNI	CCWGG	2 cut(s)	259, 442
BstSCI	CCNGG	2 cut(s)	257, 440
BstUI	CGCG	3 cut(s)	307, 501, 709
BstV1I	GCAGC	1 cut(s)	705
BstV2I	GAAGAC	2 cut(s)	5, 305
BstX2I	RGATCY	6 cut(s)	220, 250, 261, 274, 356, 640
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	6 cut(s)	220, 250, 261, 274, 356, 640
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	348, 551
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 470
CfoI	GCGC	2 cut(s)	41, 741
Cfr10I	RCCGGY	1 cut(s)	41
CseI	GACGC	2 cut(s)	416, 490
Csp6I	GTAC	2 cut(s)	55, 427
CviAII	CATG	2 cut(s)	296, 683
CviQI	GTAC	2 cut(s)	55, 427
DinI	GGCGCC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
EciI	GGCGGA	1 cut(s)	582
Eco47III	AGCGCT	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	257, 440
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	2 cut(s)	299, 686
FaiI	YATR	6 cut(s)	238, 297, 393, 510, 678, 684
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	2 cut(s)	295, 682
FauI	CCCGC	2 cut(s)	155, 300
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	160, 387, 596, 630, 716, 719
FokI	GGATG	2 cut(s)	335, 538
Fsp4HI	GCNGC	6 cut(s)	160, 387, 596, 630, 716, 719
FspBI	CTAG	4 cut(s)	102, 638, 731, 742
GlaI	GCGC	2 cut(s)	40, 740
GluI	GCNGC	6 cut(s)	160, 387, 596, 630, 716, 719
GsaI	CCCAGC	1 cut(s)	233
HaeII	RGCGCY	2 cut(s)	42, 742
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	5 cut(s)	36, 42, 98, 272, 657
HgaI	GACGC	2 cut(s)	416, 490
HhaI	GCGC	2 cut(s)	41, 741
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	299, 686
Hin6I	GCGC	2 cut(s)	39, 739
HinP1I	GCGC	2 cut(s)	39, 739
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	4 cut(s)	342, 532, 576, 660
HpaII	CCGG	5 cut(s)	36, 42, 98, 272, 657
HphI	GGTGA	3 cut(s)	485, 515, 655
Hpy166II	GTNNAC	2 cut(s)	429, 505
Hpy188I	TCNGA	7 cut(s)	25, 203, 255, 353, 537, 556, 698
Hpy188III	TCNNGA	5 cut(s)	218, 224, 272, 404, 573
Hpy8I	GTNNAC	2 cut(s)	429, 505
HpyAV	CCTTC	2 cut(s)	410, 634
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	30, 292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 465, 488, 715
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	299, 686
HspAI	GCGC	2 cut(s)	39, 739
KasI	GGCGCC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	271
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	174
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	4 cut(s)	102, 638, 731, 742
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	4 cut(s)	205, 301, 583, 661
MbiI	CCGCTC	1 cut(s)	482
MboII	GAAGA	6 cut(s)	5, 109, 269, 305, 366, 615
MflI	RGATCY	6 cut(s)	220, 250, 261, 274, 356, 640
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	1 cut(s)	136
MluNI	TGGCCA	1 cut(s)	184
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	336, 669
MmeI	TCCRAC	2 cut(s)	181, 278
Mox20I	TGGCCA	1 cut(s)	184
MroI	TCCGGA	1 cut(s)	271
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	184
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	5 cut(s)	36, 42, 98, 272, 657
MspR9I	CCNGG	2 cut(s)	259, 442
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	2 cut(s)	259, 442
MvnI	CGCG	3 cut(s)	307, 501, 709
MwoI	GCNNNNNNNGC	4 cut(s)	36, 465, 488, 715
NaeI	GCCGGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	39
NgoMIV	GCCGGC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	299, 686
NlaIV	GGNNCC	3 cut(s)	40, 252, 263
NmuCI	GTSAC	3 cut(s)	205, 301, 661
PctI	GAATGC	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	532, 576
PkrI	GCNGC	6 cut(s)	161, 388, 597, 631, 717, 720
PleI	GAGTC	2 cut(s)	336, 668
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	2 cut(s)	336, 668
Psp6I	CCWGG	2 cut(s)	257, 440
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	2 cut(s)	257, 440
PspN4I	GGNNCC	3 cut(s)	40, 252, 263
PsuI	RGATCY	6 cut(s)	220, 250, 261, 274, 356, 640
RsaI	GTAC	2 cut(s)	56, 428
RsaNI	GTAC	2 cut(s)	55, 427
RseI	CAYNNNNRTG	1 cut(s)	681
SatI	GCNGC	6 cut(s)	160, 387, 596, 630, 716, 719
SchI	GAGTC	2 cut(s)	336, 669
ScrFI	CCNGG	2 cut(s)	259, 442
SetI	ASST	9 cut(s)	107, 125, 198, 260, 331, 453, 490, 544, 626
SfaNI	GCATC	1 cut(s)	373
SfoI	GGCGCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	1 cut(s)	136
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	4 cut(s)	102, 638, 731, 742
StyD4I	CCNGG	2 cut(s)	257, 440
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	5 cut(s)	59, 152, 340, 484, 572
TasI	AATT	1 cut(s)	136
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	5 cut(s)	162, 389, 598, 632, 718
TfiI	GAWTC	2 cut(s)	532, 576
TseFI	GTSAC	3 cut(s)	205, 301, 661
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	3 cut(s)	205, 301, 661
TspDTI	ATGAA	1 cut(s)	671
TspGWI	ACGGA	2 cut(s)	118, 322
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	4 cut(s)	102, 638, 731, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.