Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

45270939 .. 45271370

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGGCGTGCGTCTCACTCGAGACCTTGCTGTCCCCAACTTTAGCGCCGGCGAGTGCGTACTCGAAGCCCGTCCGCTTCAAGAAACCCTCCACTCCGTTTCGGGCTAGCTTCTCCACATTCTTCATGTTCTCCGTCGGCAATTTGAACCCCTCCTCGATCGGTGGCGTGCGGCTTTTATCATCTCGCCGGACGATGAGGTTGTCGGAGATGCCGGCGGGTTCTTGGGGCTCCGGAGCGTGGAGGACCCGGGTTTCGAGTTCCGGGTCTAGCTTCGTGGCGATGGAGTTCGACACTCTCATAGACGTGGAGTTCAAGGACATTAATAACAACCACGTGGGCACGGATCTCAACTCCTTGGTTTCGTCACGGGTCGGCGATCTTAGCGCTGCGGATATTGATCTCAAGAGCAGTACCCACGGTGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

143

Amino Acids

15.31

Weight (kDa)

8.98

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	20 - 139	1.3e-16	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	5 cut(s)	5, 76, 172, 218, 392
AclWI	GGATC	1 cut(s)	354
AcvI	CACGTG	1 cut(s)	337
AfaI	GTAC	2 cut(s)	62, 415
AfeI	AGCGCT	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	82, 148, 316
AjiI	CACGTC	1 cut(s)	307
AluBI	AGCT	2 cut(s)	111, 273
AluI	AGCT	2 cut(s)	111, 273
Alw26I	GTCTC	2 cut(s)	17, 19
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	2 cut(s)	20, 249
Aor13HI	TCCGGA	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AseI	ATTAAT	1 cut(s)	324
AspLEI	GCGC	2 cut(s)	49, 389
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	3 cut(s)	250, 251, 265
AsuNHI	GCTAGC	1 cut(s)	107
AvaI	CYCGRG	2 cut(s)	20, 249
AvaII	GGWCC	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	233
BbrPI	CACGTG	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	277
BcnI	CCSGG	3 cut(s)	250, 251, 265
BcoDI	GTCTC	2 cut(s)	17, 19
BfaI	CTAG	2 cut(s)	108, 270
BfoI	RGCGCY	2 cut(s)	50, 390
BisI	GCNGC	3 cut(s)	6, 173, 390
BlsI	GCNGC	3 cut(s)	7, 174, 391
Bme1390I	CCNGG	3 cut(s)	250, 251, 265
Bme18I	GGWCC	1 cut(s)	246
BmeT110I	CYCGRG	2 cut(s)	20, 249
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	232, 248
BmrFI	CCNGG	3 cut(s)	250, 251, 265
BmsI	GCATC	1 cut(s)	201
BmtI	GCTAGC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	3 cut(s)	250, 251, 265
BsaAI	YACGTR	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	249, 357, 418
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	2 cut(s)	49, 214
Bse8I	GATNNNNATC	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	249, 357, 418
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	162
BsiHKCI	CYCGRG	2 cut(s)	20, 249
BsiSI	CCGG	6 cut(s)	50, 190, 215, 234, 250, 264
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	17, 19
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	2 cut(s)	20, 249
Bsp1286I	GDGCHC	2 cut(s)	233, 344
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	159, 346, 379, 400
BspACI	CCGC	5 cut(s)	5, 76, 172, 218, 392
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	232, 248
BspOI	GCTAGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	354
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	2 cut(s)	49, 214
BssAI	RCCGGY	2 cut(s)	49, 214
BssECI	CCNNGG	3 cut(s)	249, 357, 418
BssMI	GATC	4 cut(s)	159, 346, 379, 400
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	5 cut(s)	10, 51, 109, 170, 216
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	418
BstH2I	RGCGCY	2 cut(s)	50, 390
BstHHI	GCGC	2 cut(s)	49, 389
BstKTI	GATC	4 cut(s)	162, 349, 382, 403
BstMAI	GTCTC	2 cut(s)	17, 19
BstMBI	GATC	4 cut(s)	159, 346, 379, 400
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstSCI	CCNGG	3 cut(s)	248, 249, 263
BstSLI	GKGCMC	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	418
BtgZI	GCGATG	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	307
Cac8I	GCNNGC	5 cut(s)	10, 51, 109, 170, 216
CfoI	GCGC	2 cut(s)	49, 389
Cfr10I	RCCGGY	2 cut(s)	49, 214
Cfr13I	GGNCC	1 cut(s)	246
Cfr9I	CCCGGG	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	61, 414
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	6 cut(s)	70, 107, 111, 175, 231, 273
CviKI_1	RGCY	6 cut(s)	70, 107, 111, 175, 231, 273
CviQI	GTAC	2 cut(s)	61, 414
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	4 cut(s)	161, 348, 381, 402
DpnII	GATC	4 cut(s)	159, 346, 379, 400
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	246
Eco47III	AGCGCT	1 cut(s)	388
Eco72I	CACGTG	1 cut(s)	337
Eco88I	CYCGRG	2 cut(s)	20, 249
EcoO109I	RGGNCCY	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	128, 302, 428, 430
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	6, 173, 390
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	6, 173, 390
FspBI	CTAG	2 cut(s)	108, 270
GlaI	GCGC	2 cut(s)	48, 388
GluI	GCNGC	3 cut(s)	6, 173, 390
HaeII	RGCGCY	2 cut(s)	50, 390
HapII	CCGG	6 cut(s)	50, 190, 215, 234, 250, 264
HhaI	GCGC	2 cut(s)	49, 389
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	2 cut(s)	47, 387
HinP1I	GCGC	2 cut(s)	47, 387
HpaII	CCGG	6 cut(s)	50, 190, 215, 234, 250, 264
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	4 cut(s)	22, 82, 234, 406
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	2 cut(s)	306, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	2 cut(s)	306, 336
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	2 cut(s)	47, 387
Kpn2I	TCCGGA	1 cut(s)	233
KroI	GCCGGC	2 cut(s)	49, 214
KroNI	GCCGGC	2 cut(s)	51, 216
Kzo9I	GATC	4 cut(s)	159, 346, 379, 400
LmnI	GCTCC	2 cut(s)	236, 236
LpnPI	CCDG	6 cut(s)	63, 203, 228, 247, 263, 277
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	108, 270
MaeII	ACGT	2 cut(s)	306, 336
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	4 cut(s)	161, 348, 381, 402
MboI	GATC	4 cut(s)	159, 346, 379, 400
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	233, 344
MluCI	AATT	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	100, 163, 166, 192, 237
MreI	CGCCGGCG	1 cut(s)	49
MroI	TCCGGA	1 cut(s)	233
MroNI	GCCGGC	2 cut(s)	49, 214
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	6 cut(s)	50, 190, 215, 234, 250, 264
MspR9I	CCNGG	3 cut(s)	250, 251, 265
MwoI	GCNNNNNNNGC	1 cut(s)	384
NaeI	GCCGGC	2 cut(s)	51, 216
NciI	CCSGG	3 cut(s)	250, 251, 265
NdeII	GATC	4 cut(s)	159, 346, 379, 400
NgoMIV	GCCGGC	2 cut(s)	49, 214
NheI	GCTAGC	1 cut(s)	107
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	232, 248
NmuCI	GTSAC	1 cut(s)	366
PaeR7I	CTCGAG	1 cut(s)	20
PdiI	GCCGGC	2 cut(s)	51, 216
PkrI	GCNGC	3 cut(s)	7, 174, 391
Ple19I	CGATCG	1 cut(s)	162
PmaCI	CACGTG	1 cut(s)	337
PmlI	CACGTG	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	246
PshBI	ATTAAT	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	246
PspCI	CACGTG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	232, 248
PspPI	GGNCC	1 cut(s)	246
PspPPI	RGGWCCY	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	346
PvuI	CGATCG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	62, 415
RsaNI	GTAC	2 cut(s)	61, 414
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	3 cut(s)	6, 173, 390
Sau3AI	GATC	4 cut(s)	159, 346, 379, 400
Sau96I	GGNCC	1 cut(s)	246
ScrFI	CCNGG	3 cut(s)	250, 251, 265
SduI	GDGCHC	2 cut(s)	233, 344
SetI	ASST	6 cut(s)	29, 113, 203, 275, 309, 339
SfaNI	GCATC	1 cut(s)	201
Sfr274I	CTCGAG	1 cut(s)	20
SgrAI	CRCCGGYG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	20
SmaI	CCCGGG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	20, 404
SmoI	CTYRAG	2 cut(s)	20, 404
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	5 cut(s)	5, 76, 172, 218, 392
SspMI	CTAG	2 cut(s)	108, 270
StyD4I	CCNGG	3 cut(s)	248, 249, 263
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	2 cut(s)	309, 339
TaqI	TCGA	5 cut(s)	21, 65, 158, 257, 291
TasI	AATT	1 cut(s)	142
TauI	GCSGC	2 cut(s)	8, 175
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	3 cut(s)	87, 124, 359
TspMI	CCCGGG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	246
VspI	ATTAAT	1 cut(s)	324
XhoI	CTCGAG	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	249
XspI	CTAG	2 cut(s)	108, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.