Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

22038448 .. 22039023

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGACAACACCCAACGCCAACTTGATAATTTCTGTTCTCGCCTCCGCGGTAAAATTAAATGGTGCTTTATTTGTGGAGTAGCCGTGGTAATTTTTCTTATCTTCTTTATGAGTTTGGTCCTCACCAAGAGCCCGAATAACGTCAACTGTCATGTAACCAGTGCATTGCTCACCGATTCCAACCTCACCCTTGAGATCACTATTCGAAACCCGAACAGTTTCTACCGTGTCCACCATGATCACATTGACATTACTGCCAACTACAAAAACCAGACGTTGGGTTCGACATTGAATTATGCCTCCTTCTCGCAAGGACGTAATCACGAAACACGGCTAACACCGTCCTTCAGCGGGCTGATCCTTGGCGGAGGCGATGACCTCCACGGGTCGAACAACTGCGGAAATAACTATTACGATATTATTGTCAAGCTCAACATGCAAGACGAGTACAAGAAACAGATTGTTCCCAAGAAGAGATTTCAAAGGAATTTGGAGTATACGTGCGAGTTGAAGGTTCCTTCTGGCAGTGGGAGTAGCTTCAACACTACCCTGTGCCGCTATCTACAAATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

191

Amino Acids

21.72

Weight (kDa)

8.98

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	1 cut(s)	48
AciI	CCGC	6 cut(s)	46, 48, 351, 366, 399, 556
AclWI	GGATC	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	487, 567
AcuI	CTGAAG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	277, 351
AgsI	TTSAA	4 cut(s)	292, 482, 511, 541
AluBI	AGCT	2 cut(s)	430, 537
AluI	AGCT	2 cut(s)	430, 537
AlwI	GGATC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	487, 567
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	115, 163, 178
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	68, 347
BclI	TGATCA	1 cut(s)	238
BisI	GCNGC	1 cut(s)	556
BlsI	GCNGC	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	46, 84, 361, 382
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 351
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	164
BseDI	CCNNGG	4 cut(s)	46, 84, 361, 382
BseLI	CCNNNNNNNGG	2 cut(s)	277, 351
BseMI	GCAATG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	277, 351
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	195, 238, 357
BspACI	CCGC	6 cut(s)	46, 48, 351, 366, 399, 556
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	4 cut(s)	46, 84, 361, 382
BssMI	GATC	3 cut(s)	195, 238, 357
BssNAI	GTATAC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	361
Bst1107I	GTATAC	1 cut(s)	498
Bst4CI	ACNGT	4 cut(s)	149, 218, 227, 342
Bst6I	CTCTTC	1 cut(s)	467
BstBAI	YACGTR	1 cut(s)	501
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	353
BstDSI	CCRYGG	3 cut(s)	46, 84, 382
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	198, 241, 360
BstMBI	GATC	3 cut(s)	195, 238, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	439
BstUI	CGCG	1 cut(s)	48
BstZ17I	GTATAC	1 cut(s)	498
BtgI	CCRYGG	3 cut(s)	46, 84, 382
BtgZI	GCGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	166, 532
Cac8I	GCNNGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	118
Cfr42I	CCGCGG	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	4 cut(s)	152, 236, 436, 573
CviJI	RGCY	6 cut(s)	83, 132, 334, 355, 430, 537
CviKI_1	RGCY	6 cut(s)	83, 132, 334, 355, 430, 537
CviQI	GTAC	1 cut(s)	448
DpnI	GATC	3 cut(s)	197, 240, 359
DpnII	GATC	3 cut(s)	195, 238, 357
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
EciI	GGCGGA	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	4 cut(s)	155, 239, 439, 576
FaiI	YATR	7 cut(s)	110, 153, 237, 297, 437, 498, 574
FatI	CATG	4 cut(s)	151, 235, 435, 572
FauI	CCCGC	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	1 cut(s)	556
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	556
GluI	GCNGC	1 cut(s)	556
Hin1II	CATG	4 cut(s)	155, 239, 439, 576
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	3 cut(s)	115, 163, 178
Hpy166II	GTNNAC	3 cut(s)	145, 232, 498
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	3 cut(s)	145, 232, 498
HpyAV	CCTTC	4 cut(s)	313, 355, 505, 528
HpyCH4III	ACNGT	4 cut(s)	149, 218, 227, 342
HpyCH4IV	ACGT	4 cut(s)	141, 275, 316, 500
HpyCH4V	TGCA	2 cut(s)	164, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpySE526I	ACGT	4 cut(s)	141, 275, 316, 500
Hsp92II	CATG	4 cut(s)	155, 239, 439, 576
Ksp22I	TGATCA	1 cut(s)	238
KspI	CCGCGG	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	195, 238, 357
LpnPI	CCDG	4 cut(s)	172, 284, 507, 563
MaeII	ACGT	4 cut(s)	141, 275, 316, 500
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	3 cut(s)	197, 240, 359
MboI	GATC	3 cut(s)	195, 238, 357
MboII	GAAGA	2 cut(s)	94, 484
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	6 cut(s)	28, 54, 90, 292, 487, 567
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	53, 131, 194, 310, 362, 389
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	2 cut(s)	48, 351
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	3 cut(s)	195, 238, 357
NlaIII	CATG	4 cut(s)	155, 239, 439, 576
NlaIV	GGNNCC	1 cut(s)	516
NspI	RCATGY	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	118
PsrI	GAACNNNNNNTAC	2 cut(s)	206, 238
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SacII	CCGCGG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	556
Sau3AI	GATC	3 cut(s)	195, 238, 357
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	9 cut(s)	144, 186, 278, 319, 381, 432, 503, 516, 539
Sfr303I	CCGCGG	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	6 cut(s)	28, 54, 90, 292, 487, 567
SsiI	CCGC	6 cut(s)	46, 48, 351, 366, 399, 556
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	4 cut(s)	149, 218, 227, 342
TaiI	ACGT	4 cut(s)	144, 278, 319, 503
TaqI	TCGA	3 cut(s)	205, 284, 389
TasI	AATT	6 cut(s)	28, 54, 90, 292, 487, 567
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	166, 532
TspRI	CASTG	2 cut(s)	166, 532
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	487, 567
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.