Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000369.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

49039 .. 49630

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000369.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgggtcttcgtcttcctctatcagaatgcaactccggcgccggcagagtgctgtactcgaagcccgtccgcttcaagcaaccctccactccttttccggctagcttctccacattcttcacgttctccgtcagcaatttgaacccctcctcgatctgcggcgggcaggctttgatcatctggccagacgatgaggttgtcggagacgccggcgggttcttggggctccaaagcgtagaggacccgggttcgggttccgagtcgagcttcgtggcggtgaacctcgtgaattgctggatcgaattcggcgggtcgagtcggtatgtcaacgacttgggtgtttctgggtgtttaggatctgggttgtttatgggtgtttatgatctgggttgtgtgttgttattgctcgatctaatctgggtgtttctgatcattcgtaatatgttggatgatgatagtgaggtggcttattggtgggagtggtggaggatgaggaggaggagaggtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

170

Amino Acids

18.68

Weight (kDa)

4.62

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	6 cut(s)	70, 159, 162, 213, 275, 309
AclWI	GGATC	2 cut(s)	305, 364
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	39, 207
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	250, 251
AgsI	TTSAA	2 cut(s)	76, 142
AluBI	AGCT	2 cut(s)	105, 267
AluI	AGCT	2 cut(s)	105, 267
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	305, 364
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	2 cut(s)	245, 246
AsuHPI	GGTGA	1 cut(s)	289
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	5
BclI	TGATCA	2 cut(s)	174, 429
BcnI	CCSGG	2 cut(s)	245, 246
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	245, 246
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	4 cut(s)	40, 227, 243, 256
BmrFI	CCNGG	2 cut(s)	245, 246
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	245, 246
BsaHI	GRCGYC	2 cut(s)	39, 207
BsaJI	CCNNGG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 251
Bse118I	RCCGGY	2 cut(s)	41, 209
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	454, 495
BseLI	CCNNNNNNNGG	2 cut(s)	250, 251
BseRI	GAGGAG	3 cut(s)	139, 508, 511
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	5 cut(s)	36, 42, 98, 210, 245
BslI	CCNNNNNNNGG	2 cut(s)	250, 251
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	7 cut(s)	153, 174, 297, 356, 382, 409, 429
BspACI	CCGC	6 cut(s)	70, 159, 162, 213, 275, 309
BspANI	GGCC	1 cut(s)	184
BspLI	GGNNCC	4 cut(s)	40, 227, 243, 256
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	305, 364
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	2 cut(s)	41, 209
BssAI	RCCGGY	2 cut(s)	41, 209
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	7 cut(s)	153, 174, 297, 356, 382, 409, 429
BssNI	GRCGYC	2 cut(s)	39, 207
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
BstACI	GRCGYC	2 cut(s)	39, 207
BstC8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 211
BstF5I	GGATG	2 cut(s)	454, 495
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	7 cut(s)	156, 177, 300, 359, 385, 412, 432
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	7 cut(s)	153, 174, 297, 356, 382, 409, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	243, 244
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	454, 495
Cac8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 211
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	41, 209
Cfr13I	GGNCC	1 cut(s)	241
Cfr9I	CCCGGG	1 cut(s)	244
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	55
CviJI	RGCY	9 cut(s)	64, 101, 105, 170, 184, 226, 267, 467, 510
CviKI_1	RGCY	9 cut(s)	64, 101, 105, 170, 184, 226, 267, 467, 510
CviQI	GTAC	1 cut(s)	55
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	7 cut(s)	155, 176, 299, 358, 384, 411, 431
DpnII	GATC	7 cut(s)	153, 174, 297, 356, 382, 409, 429
EaeI	YGGCCR	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	198
FaiI	YATR	4 cut(s)	324, 371, 381, 443
FauI	CCCGC	3 cut(s)	155, 206, 302
FbaI	TGATCA	2 cut(s)	174, 429
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	2 cut(s)	461, 502
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	5 cut(s)	36, 42, 98, 210, 245
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 207
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	260, 316
HpaII	CCGG	5 cut(s)	36, 42, 98, 210, 245
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	280, 328
Hpy188I	TCNGA	4 cut(s)	25, 203, 259, 429
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	280, 328
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	2 cut(s)	39, 207
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	2 cut(s)	41, 209
KroNI	GCCGGC	2 cut(s)	43, 211
Ksp22I	TGATCA	2 cut(s)	174, 429
Kzo9I	GATC	7 cut(s)	153, 174, 297, 356, 382, 409, 429
LmnI	GCTCC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	122
MalI	GATC	7 cut(s)	155, 176, 299, 358, 384, 411, 431
MboI	GATC	7 cut(s)	153, 174, 297, 356, 382, 409, 429
MboII	GAAGA	2 cut(s)	5, 109
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	3 cut(s)	136, 289, 302
MluNI	TGGCCA	1 cut(s)	184
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	269, 325
MmeI	TCCRAC	2 cut(s)	181, 426
Mox20I	TGGCCA	1 cut(s)	184
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	2 cut(s)	41, 209
MscI	TGGCCA	1 cut(s)	184
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	5 cut(s)	36, 42, 98, 210, 245
MspR9I	CCNGG	2 cut(s)	245, 246
Mva1269I	GAATGC	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	36
NaeI	GCCGGC	2 cut(s)	43, 211
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	2 cut(s)	245, 246
NdeII	GATC	7 cut(s)	153, 174, 297, 356, 382, 409, 429
NgoMIV	GCCGGC	2 cut(s)	41, 209
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	4 cut(s)	40, 227, 243, 256
PctI	GAATGC	1 cut(s)	32
PdiI	GCCGGC	2 cut(s)	43, 211
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	268, 324
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	2 cut(s)	268, 324
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
PspN4I	GGNNCC	4 cut(s)	40, 227, 243, 256
PspPI	GGNCC	1 cut(s)	241
PspPPI	RGGWCCY	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	7 cut(s)	153, 174, 297, 356, 382, 409, 429
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	2 cut(s)	269, 325
ScrFI	CCNGG	2 cut(s)	245, 246
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	7 cut(s)	107, 125, 198, 269, 285, 465, 508
SfoI	GGCGCC	1 cut(s)	40
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	241
SmaI	CCCGGG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	136, 289, 302
SsiI	CCGC	6 cut(s)	70, 159, 162, 213, 275, 309
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	243, 244
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	6 cut(s)	59, 152, 263, 300, 314, 408
TasI	AATT	3 cut(s)	136, 289, 302
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	118
TspMI	CCCGGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	302
XmaI	CCCGGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.