Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

68624701 .. 68624931

Gene Structure 231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG492800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGGTCTTCGTCTTCCTCTATCAGAATGCAACTCCGGCGCCGACAGAGTGCTATACTCGAAGCCCGTCCGCTTCAAGCAACCCTCCACTCCGTTTCTGGCTAGCTTCTCCACATTCTTCACGTTCTCCGTCAGCAATTTGAACCCCTCCTCGATCGGCGGCAGGCTGGCTTTTATCATCTCACCGGACGATGAGGTTGTCGGAGACGCCGGCGAGTTCTTGGGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

76

Amino Acids

8.17

Weight (kDa)

5.04

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	10 - 76	3.2e-12	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	2 cut(s)	70, 159
AcyI	GRCGYC	2 cut(s)	39, 207
AgsI	TTSAA	2 cut(s)	76, 142
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	5
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	102, 229
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	40
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	5
BsaHI	GRCGYC	2 cut(s)	39, 207
BsaWI	WCCGGW	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	36, 185, 210
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	70, 159
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	2 cut(s)	39, 207
BstACI	GRCGYC	2 cut(s)	39, 207
BstC8I	GCNNGC	4 cut(s)	103, 164, 168, 211
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	5
Cac8I	GCNNGC	4 cut(s)	103, 164, 168, 211
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	209
CseI	GACGC	1 cut(s)	215
CviJI	RGCY	6 cut(s)	64, 101, 105, 166, 170, 226
CviKI_1	RGCY	6 cut(s)	64, 101, 105, 166, 170, 226
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	198
FaiI	YATR	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	102, 229
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	3 cut(s)	36, 185, 210
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 207
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HpaII	CCGG	3 cut(s)	36, 185, 210
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	25, 203
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	2 cut(s)	39, 207
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	153
LpnPI	CCDG	6 cut(s)	49, 83, 148, 152, 198, 223
MaeI	CTAG	2 cut(s)	102, 229
MaeII	ACGT	1 cut(s)	122
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	5, 109
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	136
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	27, 94, 157, 160, 187
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	209
MspI	CCGG	3 cut(s)	36, 185, 210
Mva1269I	GAATGC	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	36
NaeI	GCCGGC	1 cut(s)	211
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	1 cut(s)	153
NgoMIV	GCCGGC	1 cut(s)	209
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	161
Ple19I	CGATCG	1 cut(s)	156
PluTI	GGCGCC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	40
PvuI	CGATCG	1 cut(s)	156
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	3 cut(s)	107, 125, 198
SfoI	GGCGCC	1 cut(s)	40
SgrAI	CRCCGGYG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	70, 159
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	102, 229
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	59, 152
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	162
TspGWI	ACGGA	2 cut(s)	81, 118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	2 cut(s)	102, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.