Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

12244617 .. 12245213

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13661.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCCTCCAGCCGAGCTCCCAGCCCCGGGTACCATGGAAAGCCAACTTGATAATTTATGTGCTCGCCTCAGTCATAATCTTAAATGGTTCAGTTGTTCAGTTGTCTTCTTGGTCGTTATGAGTATCTTCATCCTCTCTTTGTGCCTCGCCAAGAGTCCCGATAACGTCCGCTGTCACGTAACCGAAGCATCTCTCGTCACCGATTCCAACCTCACCATCGGGATCACAATCCGAAACCCTAACGGATTTTACCATGTCCACCATGATCACATTAACTTTACAGCCTACTACCAAAACCAGACGTCGGGTTCGTTATTGAACAATGCCTCCTTCTCCCAAGGACGCAAGAATGAAACTCATCTAACACCATCCTTCAACGGGATGCAGATCCTTCGTGGAGGCAATGACTCTGATTCTAGAGAAAACTATTACGATATTCTTGTCAAGTTCAACATGCAGGACGAGTACAAGAGACAGCTTCTTCCCAGGACGAGACATCATAGGCATTTGGAGTATAGTTGCGAGTTGAAGGTTCCTGCTAGCAGTGCGAGTAGCTTCAACACCACCCTGTGCCGCTATCATAATCTCGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

199

Amino Acids

22.51

Weight (kDa)

7.16

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	2 cut(s)	169, 574
AclWI	GGATC	3 cut(s)	230, 382, 584
AcyI	GRCGYC	1 cut(s)	302
AdeI	CACNNNGTG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	31, 467
AfiI	CCNNNNNNNGG	4 cut(s)	25, 26, 304, 378
AgsI	TTSAA	5 cut(s)	319, 376, 451, 529, 559
AjnI	CCWGG	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	3 cut(s)	16, 478, 555
AluI	AGCT	3 cut(s)	16, 478, 555
Alw21I	GWGCWC	2 cut(s)	18, 64
Alw26I	GTCTC	2 cut(s)	466, 487
AlwI	GGATC	3 cut(s)	230, 382, 584
Ama87I	CYCGRG	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
Asp718I	GGTACC	1 cut(s)	29
AsuC2I	CCSGG	2 cut(s)	26, 27
AsuHPI	GGTGA	2 cut(s)	190, 205
AsuNHI	GCTAGC	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	18, 64
BccI	CCATC	2 cut(s)	224, 376
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	487
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	2 cut(s)	26, 27
BcoDI	GTCTC	2 cut(s)	466, 487
BfaI	CTAG	2 cut(s)	417, 540
BisI	GCNGC	1 cut(s)	574
BlsI	GCNGC	1 cut(s)	575
Bme1390I	CCNGG	3 cut(s)	26, 27, 487
BmeT110I	CYCGRG	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	31, 534
BmrFI	CCNGG	3 cut(s)	26, 27, 487
BmsI	GCATC	2 cut(s)	197, 372
BmtI	GCTAGC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	97
BpuMI	CCSGG	2 cut(s)	26, 27
BsaAI	YACGTR	1 cut(s)	178
BsaBI	GATNNNNATC	2 cut(s)	227, 386
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	5 cut(s)	24, 25, 33, 337, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 26, 304, 378
Bse3DI	GCAATG	1 cut(s)	409
Bse8I	GATNNNNATC	2 cut(s)	227, 386
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	5 cut(s)	24, 25, 33, 337, 485
BseGI	GGATG	3 cut(s)	129, 368, 387
BseJI	GATNNNNATC	2 cut(s)	227, 386
BseLI	CCNNNNNNNGG	4 cut(s)	25, 26, 304, 378
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	2 cut(s)	18, 64
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	4 cut(s)	25, 26, 304, 378
BsmAI	GTCTC	2 cut(s)	466, 487
BsmFI	GGGAC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	18, 64
Bsp143I	GATC	4 cut(s)	222, 265, 387, 589
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	169, 574
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	31, 534
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	3 cut(s)	230, 382, 584
BspT107I	GGYRCC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	409
BssECI	CCNNGG	5 cut(s)	24, 25, 33, 337, 485
BssMI	GATC	4 cut(s)	222, 265, 387, 589
BssNI	GRCGYC	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	33, 337
Bst2UI	CCWGG	1 cut(s)	487
BstACI	GRCGYC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	64, 541
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	129, 368, 387
BstKTI	GATC	4 cut(s)	225, 268, 390, 592
BstMAI	GTCTC	2 cut(s)	466, 487
BstMBI	GATC	4 cut(s)	222, 265, 387, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	24, 25, 485
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	129, 368, 387
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	64, 541
Cfr9I	CCCGGG	1 cut(s)	25
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	30, 466
CviAII	CATG	5 cut(s)	34, 254, 263, 454, 594
CviJI	RGCY	7 cut(s)	11, 16, 23, 42, 284, 478, 555
CviKI_1	RGCY	7 cut(s)	11, 16, 23, 42, 284, 478, 555
CviQI	GTAC	2 cut(s)	30, 466
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	4 cut(s)	224, 267, 389, 591
DpnII	GATC	4 cut(s)	222, 265, 387, 589
DraIII	CACNNNGTG	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	33, 337
Eco24I	GRGCYC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	2 cut(s)	33, 337
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	33, 337
FaeI	CATG	5 cut(s)	37, 257, 266, 457, 597
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	5 cut(s)	33, 253, 262, 453, 593
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	574
FokI	GGATG	3 cut(s)	116, 355, 394
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	574
FspBI	CTAG	2 cut(s)	417, 540
GluI	GCNGC	1 cut(s)	574
GsaI	CCCAGC	1 cut(s)	23
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	37, 257, 266, 457, 597
HinfI	GANTC	4 cut(s)	154, 203, 407, 413
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	190, 205
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	233, 412
Hpy188III	TCNNGA	4 cut(s)	158, 220, 417, 587
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	4 cut(s)	340, 382, 401, 523
HpyCH4IV	ACGT	3 cut(s)	165, 177, 302
HpyCH4V	TGCA	2 cut(s)	385, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	3 cut(s)	165, 177, 302
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	5 cut(s)	37, 257, 266, 457, 597
KpnI	GGTACC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	222, 265, 387, 589
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	9 cut(s)	21, 33, 39, 311, 443, 472, 499, 549, 581
LweI	GCATC	2 cut(s)	197, 372
MaeI	CTAG	2 cut(s)	417, 540
MaeII	ACGT	3 cut(s)	165, 177, 302
MaeIII	GTNAC	3 cut(s)	173, 178, 196
MalI	GATC	4 cut(s)	224, 267, 389, 591
MboI	GATC	4 cut(s)	222, 265, 387, 589
MboII	GAAGA	3 cut(s)	97, 118, 473
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	18, 64
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	163, 401
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	15, 77, 143, 155, 221, 337, 392
MseI	TTAA	2 cut(s)	81, 273
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	26, 27, 487
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	545
NciI	CCSGG	2 cut(s)	26, 27
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	222, 265, 387, 589
NheI	GCTAGC	1 cut(s)	539
NlaIII	CATG	5 cut(s)	37, 257, 266, 457, 597
NlaIV	GGNNCC	2 cut(s)	31, 534
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	173, 196
NspI	RCATGY	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	203, 413
PkrI	GCNGC	1 cut(s)	575
PleI	GAGTC	2 cut(s)	162, 401
PpsI	GAGTC	2 cut(s)	162, 401
Ppu21I	YACGTR	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	31, 534
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	31, 467
RsaNI	GTAC	2 cut(s)	30, 466
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	81, 273
SatI	GCNGC	1 cut(s)	574
Sau3AI	GATC	4 cut(s)	222, 265, 387, 589
SchI	GAGTC	2 cut(s)	163, 401
ScrFI	CCNGG	3 cut(s)	26, 27, 487
SduI	GDGCHC	2 cut(s)	18, 64
SetI	ASST	8 cut(s)	18, 168, 180, 213, 305, 480, 534, 557
SfaNI	GCATC	2 cut(s)	197, 372
SmaI	CCCGGG	1 cut(s)	27
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	169, 574
SspMI	CTAG	2 cut(s)	417, 540
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	24, 25, 485
StyI	CCWWGG	2 cut(s)	33, 337
TaiI	ACGT	3 cut(s)	168, 180, 305
TaqI	TCGA	1 cut(s)	588
TasI	AATT	1 cut(s)	52
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	203, 413
Tru1I	TTAA	2 cut(s)	81, 273
Tru9I	TTAA	2 cut(s)	81, 273
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	2 cut(s)	173, 196
Tsp45I	GTSAC	2 cut(s)	173, 196
TspDTI	ATGAA	2 cut(s)	118, 366
TspGWI	ACGGA	1 cut(s)	258
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	1 cut(s)	550
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	1 cut(s)	457
XmaI	CCCGGG	1 cut(s)	25
XspI	CTAG	2 cut(s)	417, 540
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.