Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000657.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

33988 .. 34559

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000657.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggttcttcgtcttcctctatcagaatgcaactccggcgccagcagagtgctgtactcgaagcccgttctcttcaagcaacccttcacttcgttttctgctagcttctccacattcttcacgttctccgtcagcaatttgaacccctcctcgatcggtggcaggctggcttttatcatctcgcctgacgatgaggttgtcaaagacgctggcgggttcttggggcctcagagtgtggaggacccaagtttgggttccgggtcgagcttcatggtggtggacctcgtaaattgctggatcgaattcggcgggtctgcaacatatccgtttcgatctgggttgtttctgggtgtgtatgatctgggttgtgtgttgttattgctcgatctgatctgggtgtttctgatcattcgtaatatgttggatgatgatagtgaggtggcttattggtggaggatgaggaggaggagagatggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

159

Amino Acids

17.67

Weight (kDa)

4.84

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	2 cut(s)	213, 309
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	250, 251
AgsI	TTSAA	2 cut(s)	76, 142
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	2 cut(s)	105, 267
AluI	AGCT	2 cut(s)	105, 267
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	224, 241, 280
AsuC2I	CCSGG	1 cut(s)	259
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	241, 280
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	5
BccI	CCATC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	259
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	2 cut(s)	241, 280
BmgT120I	GGNCC	3 cut(s)	224, 241, 280
BmiI	GGNNCC	4 cut(s)	40, 225, 243, 256
BmrFI	CCNGG	1 cut(s)	259
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 251
BseGI	GGATG	2 cut(s)	430, 462
BseLI	CCNNNNNNNGG	2 cut(s)	250, 251
BseMII	CTCAG	1 cut(s)	242
BseRI	GAGGAG	3 cut(s)	139, 475, 478
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	36, 258
BslI	CCNNNNNNNGG	2 cut(s)	250, 251
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	226
Bsp143I	GATC	7 cut(s)	153, 297, 332, 358, 385, 390, 405
BspACI	CCGC	2 cut(s)	213, 309
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	4 cut(s)	40, 225, 243, 256
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	38
BssMI	GATC	7 cut(s)	153, 297, 332, 358, 385, 390, 405
BssNI	GRCGYC	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 211
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	430, 462
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	7 cut(s)	156, 300, 335, 361, 388, 393, 408
BstMBI	GATC	7 cut(s)	153, 297, 332, 358, 385, 390, 405
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	430, 462
Cac8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 211
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	3 cut(s)	224, 241, 280
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	8 cut(s)	64, 105, 166, 170, 226, 267, 443, 477
CviKI_1	RGCY	8 cut(s)	64, 105, 166, 170, 226, 267, 443, 477
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	228
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	7 cut(s)	155, 299, 334, 360, 387, 392, 407
DpnII	GATC	7 cut(s)	153, 297, 332, 358, 385, 390, 405
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	241, 280
EcoO109I	RGGNCCY	2 cut(s)	224, 241
EcoRI	GAATTC	1 cut(s)	302
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	1 cut(s)	274
FaiI	YATR	4 cut(s)	272, 322, 357, 419
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	1 cut(s)	270
FauI	CCCGC	2 cut(s)	206, 302
FbaI	TGATCA	1 cut(s)	405
FokI	GGATG	2 cut(s)	437, 469
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	2 cut(s)	36, 258
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	36, 258
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	25, 231, 390, 405
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	30, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	7 cut(s)	153, 297, 332, 358, 385, 390, 405
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	122
MalI	GATC	7 cut(s)	155, 299, 334, 360, 387, 392, 407
MboI	GATC	7 cut(s)	153, 297, 332, 358, 385, 390, 405
MboII	GAAGA	3 cut(s)	5, 64, 109
MluCI	AATT	3 cut(s)	136, 289, 302
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	2 cut(s)	36, 258
MspR9I	CCNGG	1 cut(s)	259
Mva1269I	GAATGC	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	36
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	7 cut(s)	153, 297, 332, 358, 385, 390, 405
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	4 cut(s)	40, 225, 243, 256
PctI	GAATGC	1 cut(s)	32
Ple19I	CGATCG	1 cut(s)	156
PluTI	GGCGCC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
PspN4I	GGNNCC	4 cut(s)	40, 225, 243, 256
PspPI	GGNCC	3 cut(s)	224, 241, 280
PspPPI	RGGWCCY	1 cut(s)	241
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	275
Sau3AI	GATC	7 cut(s)	153, 297, 332, 358, 385, 390, 405
Sau96I	GGNCC	3 cut(s)	224, 241, 280
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	6 cut(s)	107, 125, 198, 269, 285, 441
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	2 cut(s)	241, 280
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	136, 289, 302
SsiI	CCGC	2 cut(s)	213, 309
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	257
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	6 cut(s)	59, 152, 263, 300, 331, 384
TasI	AATT	3 cut(s)	136, 289, 302
TatI	WGTACW	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	118, 315
VpaK11BI	GGWCC	2 cut(s)	241, 280
XapI	RAATTY	1 cut(s)	302
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.