Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

22212966 .. 22213918

Gene Structure 953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31301.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACTGCGACGCTGAGAGGAAGCTATGTCCACCGGTACGACGCCGTGAGAAAGGGCCGTCGCGCTTTGGGGGTCAAGTTTTCAGAGGGGGGGGGGTCGGGTTTTCAGATCCTTGAGACGCTCACTGATCTCAAAGAGACGGGGAAGATAGAAGGCTCAAGTCAAGTCAATCGTCGACCATTTTCAGCTTTGGGGGATGATAATAAAAGCAATGGCTTTGGATACAGCGGAGCTGGAGCCGGCCGGCCTTGTTTGGTACTGGGTTTACTAAAAGGAGAAACCTTTTGCAGTCTCCATGCTCTCATCATCTTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.24

Weight (kDa)

9.75

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	175
AccII	CGCG	1 cut(s)	63
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	38, 258
AgeI	ACCGGT	1 cut(s)	33
AluBI	AGCT	3 cut(s)	24, 188, 233
AluI	AGCT	3 cut(s)	24, 188, 233
Alw26I	GTCTC	3 cut(s)	110, 131, 296
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	3 cut(s)	55, 241, 245
AsiGI	ACCGGT	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	55
BceAI	ACGGC	2 cut(s)	29, 42
BciVI	GTATCC	1 cut(s)	215
BcoDI	GTCTC	3 cut(s)	110, 131, 296
BfuI	GTATCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	269
BmuI	ACTGGG	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	134, 142
BsaHI	GRCGYC	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	33
Bse118I	RCCGGY	3 cut(s)	33, 239, 243
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	264
BseX3I	CGGCCG	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	57, 243, 247
BshTI	ACCGGT	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	34, 240, 244
BsmAI	GTCTC	3 cut(s)	110, 131, 296
BsmBI	CGTCTC	2 cut(s)	110, 131
BsnI	GGCC	3 cut(s)	57, 243, 247
Bsp143I	GATC	2 cut(s)	108, 127
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	3 cut(s)	57, 243, 247
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	217
BsrFI	RCCGGY	3 cut(s)	33, 239, 243
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	3 cut(s)	33, 239, 243
BssMI	GATC	2 cut(s)	108, 127
BssNI	GRCGYC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	241, 245
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	111, 130
BstMAI	GTCTC	3 cut(s)	110, 131, 296
BstMBI	GATC	2 cut(s)	108, 127
BstMCI	CGRYCG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BstZI	CGGCCG	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	57, 243, 247
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	241, 245
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	3 cut(s)	33, 239, 243
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	3 cut(s)	19, 50, 127
Csp6I	GTAC	2 cut(s)	37, 257
CspAI	ACCGGT	1 cut(s)	33
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	9 cut(s)	24, 57, 156, 188, 216, 233, 239, 243, 247
CviKI_1	RGCY	9 cut(s)	24, 57, 156, 188, 216, 233, 239, 243, 247
CviQI	GTAC	2 cut(s)	37, 257
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	110, 129
DpnII	GATC	2 cut(s)	108, 127
EaeI	YGGCCR	1 cut(s)	241
EagI	CGGCCG	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	241
Eco52I	CGGCCG	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	295
Esp3I	CGTCTC	2 cut(s)	110, 131
FaeI	CATG	1 cut(s)	299
FaiI	YATR	2 cut(s)	27, 297
FatI	CATG	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	175
FokI	GGATG	1 cut(s)	209
FseI	GGCCGGCC	1 cut(s)	247
GlaI	GCGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	57, 243, 247
HapII	CCGG	3 cut(s)	34, 240, 244
HgaI	GACGC	3 cut(s)	19, 50, 127
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HpaII	CCGG	3 cut(s)	34, 240, 244
Hpy166II	GTNNAC	3 cut(s)	31, 176, 266
Hpy188I	TCNGA	2 cut(s)	85, 108
Hpy8I	GTNNAC	3 cut(s)	31, 176, 266
Hpy99I	CGWCG	4 cut(s)	13, 44, 63, 177
HpyAV	CCTTC	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	288
HpyF3I	CTNAG	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	1 cut(s)	63
KroI	GCCGGC	2 cut(s)	239, 243
KroNI	GCCGGC	2 cut(s)	241, 245
Kzo9I	GATC	2 cut(s)	108, 127
LmnI	GCTCC	2 cut(s)	230, 236
LpnPI	CCDG	6 cut(s)	47, 219, 245, 253, 257, 298
MalI	GATC	2 cut(s)	110, 129
MboI	GATC	2 cut(s)	108, 127
MboII	GAAGA	2 cut(s)	157, 301
MflI	RGATCY	1 cut(s)	108
MnlI	CCTC	2 cut(s)	11, 79
MroNI	GCCGGC	2 cut(s)	239, 243
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	3 cut(s)	34, 240, 244
MvnI	CGCG	1 cut(s)	63
NaeI	GCCGGC	2 cut(s)	241, 245
NdeII	GATC	2 cut(s)	108, 127
NgoMIV	GCCGGC	2 cut(s)	239, 243
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	238
PdiI	GCCGGC	2 cut(s)	241, 245
PinAI	ACCGGT	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	108
RigI	GGCCGGCC	1 cut(s)	247
RsaI	GTAC	2 cut(s)	38, 258
RsaNI	GTAC	2 cut(s)	37, 257
SalI	GTCGAC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	108, 127
Sau96I	GGNCC	1 cut(s)	55
SetI	ASST	5 cut(s)	26, 190, 235, 284, 317
SmlI	CTYRAG	2 cut(s)	113, 157
SmoI	CTYRAG	2 cut(s)	113, 157
SsiI	CCGC	1 cut(s)	228
TaqI	TCGA	1 cut(s)	175
TscAI	CASTG	1 cut(s)	130
TspRI	CASTG	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.