Rmu_sc0005173.1_g000026

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005173.1
OG0001606
Physical Location & Seq
Reverse (-)
120006 .. 126651
6646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005173.1_g000026.1.cds

Sequence Viewer

Length: 1341 bp
atgggtcttcgtcttcctctatcagaatgcaactccggcgcctgcagagtgttgtactcgaagcccgtccgcttcaagcaaccctccactccgtttcaggctagcttctccacattcttcacgttcttcgtcagcaatttgaacccctcctcgatctgcgacgggctggcttttatcatctcgccgaacgatgaggttgttcggagacgccggcgggttcttggggctccagagtgtggaggactcgggttcgggttccgggtcgagcttcgtggcggtggaccttatgaattgctggatcgaattcggtgggtcttcaacatatccgtttcgtatttgaatctcaaacccagagaccggctcctctccttccctctcgatcttgatcagtacgtcaacaacttgggtgtttctgggtgtttaggatctgggttgtttctaggtgtttatgatctgggaggaggagaggtggctaagcttagtggggacgacgacggaggtggagatggaattgtggaggcggagcttccatgccctggagggggcccaccaagcgctgcagagtggcagtgtcctagagccccctcgacactggcacaaagtgtgaccgcatgcctgaggttgccggaattcaattcagagaaggctgaggtcgccgtcgtggtgaggcagagttcttggaagctggaatttggtctgacttgttggcgcgcaatgctgaataggcaaagaggccagaaacaggaagggactcaaacgtggctgcatggaggggtggaggtggctcggtggctgactggcgggactaagcggctgaaggagttgtggctggaaggctggaagcgggacatccacgatatcaagaggaagcttcggccatcggtgagacttcacgaactggccggaatcggaaaatttgccggcgaacctgagaagctttcgggcttcgattctctttcactgaagctcttctgtgaaaaccaaagtaggatgacagcggtgtcgagaggaagctgtgcccattggtatatcgtcggcgaggatggtggtgacgacagcggtgattacctcggaaatgaagggtggtgggaatgggagtgggagaggcgggggtgtagaggaaaggaggaggaggagggcggagatcacggctcagatcgggttttgggttatgcgaattgggagagtgagacagagcgcaagagagagatagaggaagctgtgcccattggtatatcgtcggcgaggatggtggtgacgacagcggtgattacctcggaaatgaaggggttggagagggaaacgtcatcgttttgggagatgaaggtttggtggcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

446

Amino Acids

49.72

Weight (kDa)

5.95

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1000
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 2 cut(s) 236, 536
AccII CGCG 1 cut(s) 711
AclWI GGATC 2 cut(s) 306, 433
AcoI YGGCCR 2 cut(s) 875, 900
AcsI RAATTY 4 cut(s) 303, 629, 689, 914
AcuI CTGAAG 2 cut(s) 836, 983
AcyI GRCGYC 2 cut(s) 39, 208
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 2 cut(s) 56, 392
AfeI AGCGCT 1 cut(s) 556
AfiI CCNNNNNNNGG 6 cut(s) 236, 357, 536, 541, 542, 742
AgsI TTSAA 5 cut(s) 76, 142, 319, 340, 634
AjnI CCWGG 1 cut(s) 535
Alw26I GTCTC 4 cut(s) 199, 348, 880, 1184
AlwI GGATC 2 cut(s) 306, 433
Ama87I CYCGRG 1 cut(s) 245
Aor51HI AGCGCT 1 cut(s) 556
AoxI GGCC 4 cut(s) 544, 733, 875, 900
ApaI GGGCCC 1 cut(s) 548
ApeKI GCWGC 2 cut(s) 557, 763
ApoI RAATTY 4 cut(s) 303, 629, 689, 914
Asp700I GAANNNNTTC 1 cut(s) 968
AspLEI GCGC 5 cut(s) 41, 557, 711, 713, 1200
AspS9I GGNCC 3 cut(s) 281, 544, 545
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 6 cut(s) 676, 895, 1061, 1073, 1267, 1279
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 281
AxyI CCTNAGG 1 cut(s) 617
BaeGI GKGCMC 3 cut(s) 548, 1021, 1227
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 3 cut(s) 229, 548, 583
BbsI GAAGAC 2 cut(s) 5, 307
BbvCI CCTCAGC 1 cut(s) 648
BbvI GCAGC 2 cut(s) 544, 750
BccI CCATC 4 cut(s) 500, 886, 1037, 1243
BceAI ACGGC 2 cut(s) 641, 1165
BciT130I CCWGG 1 cut(s) 537
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 4 cut(s) 199, 348, 880, 1184
BfaI CTAG 3 cut(s) 102, 440, 576
BfmI CTRYAG 2 cut(s) 43, 558
BfoI RGCGCY 2 cut(s) 42, 558
BisI GCNGC 3 cut(s) 558, 764, 812
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 3 cut(s) 559, 765, 813
Bme1390I CCNGG 2 cut(s) 260, 537
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 3 cut(s) 281, 544, 545
BmiI GGNNCC 6 cut(s) 40, 228, 257, 362, 545, 546
BmrFI CCNGG 2 cut(s) 260, 537
BmtI GCTAGC 1 cut(s) 105
BpiI GAAGAC 2 cut(s) 5, 307
BplI GAGNNNNNCTC 2 cut(s) 345, 377
BpmI CTGGAG 2 cut(s) 213, 558
Bpu10I CCTNAGC 1 cut(s) 648
Bpu1102I GCTNAGC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 2 cut(s) 39, 208
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 535, 1069, 1275
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 6 cut(s) 236, 357, 536, 541, 542, 742
Bse118I RCCGGY 3 cut(s) 210, 357, 920
Bse1I ACTGG 3 cut(s) 597, 802, 903
Bse21I CCTNAGG 1 cut(s) 617
Bse3DI GCAATG 1 cut(s) 720
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 3 cut(s) 535, 1069, 1275
BseGI GGATG 4 cut(s) 849, 996, 1048, 1254
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 6 cut(s) 236, 357, 536, 541, 542, 742
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 4 cut(s) 608, 639, 921, 1167
BseNI ACTGG 3 cut(s) 597, 802, 903
BsePI GCGCGC 1 cut(s) 709
BseRI GAGGAG 7 cut(s) 139, 353, 474, 477, 1142, 1145, 1148
BseSI GKGCMC 3 cut(s) 548, 1021, 1227
BseXI GCAGC 2 cut(s) 544, 750
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 4 cut(s) 546, 735, 877, 902
BshNI GGYRCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 7 cut(s) 36, 211, 259, 358, 626, 903, 921
BslFI GGGAC 4 cut(s) 500, 763, 817, 860
BslI CCNNNNNNNGG 6 cut(s) 236, 357, 536, 541, 542, 742
BsmAI GTCTC 4 cut(s) 199, 348, 880, 1184
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 4 cut(s) 500, 763, 817, 860
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 4 cut(s) 546, 735, 877, 902
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 245
Bsp120I GGGCCC 1 cut(s) 544
Bsp1286I GDGCHC 5 cut(s) 229, 548, 583, 1021, 1227
Bsp143I GATC 8 cut(s) 153, 298, 379, 385, 425, 451, 1144, 1156
Bsp1720I GCTNAGC 1 cut(s) 474
BspANI GGCC 4 cut(s) 546, 735, 877, 902
BspCNI CTCAG 4 cut(s) 609, 640, 922, 1166
BspFNI CGCG 1 cut(s) 711
BspLI GGNNCC 6 cut(s) 40, 228, 257, 362, 545, 546
BspMAI CTGCAG 2 cut(s) 47, 562
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 306, 433
BspQI GCTCTTC 1 cut(s) 974
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 720
BsrFI RCCGGY 3 cut(s) 210, 357, 920
BsrI ACTGG 3 cut(s) 597, 802, 903
BssAI RCCGGY 3 cut(s) 210, 357, 920
BssECI CCNNGG 3 cut(s) 535, 1069, 1275
BssHII GCGCGC 1 cut(s) 709
BssMI GATC 8 cut(s) 153, 298, 379, 385, 425, 451, 1144, 1156
BssNI GRCGYC 2 cut(s) 39, 208
Bst2UI CCWGG 1 cut(s) 537
Bst6I CTCTTC 1 cut(s) 974
BstACI GRCGYC 2 cut(s) 39, 208
BstC8I GCNNGC 7 cut(s) 43, 103, 168, 212, 613, 711, 922
BstDEI CTNAG 7 cut(s) 474, 479, 617, 648, 807, 930, 1153
BstF5I GGATG 4 cut(s) 849, 996, 1048, 1254
BstFNI CGCG 1 cut(s) 711
BstH2I RGCGCY 2 cut(s) 42, 558
BstHHI GCGC 5 cut(s) 41, 557, 711, 713, 1200
BstKTI GATC 8 cut(s) 156, 301, 382, 388, 428, 454, 1147, 1159
BstMAI GTCTC 4 cut(s) 199, 348, 880, 1184
BstMBI GATC 8 cut(s) 153, 298, 379, 385, 425, 451, 1144, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 36, 552, 653, 715, 724
BstNI CCWGG 1 cut(s) 537
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 2 cut(s) 258, 535
BstSFI CTRYAG 2 cut(s) 43, 558
BstSLI GKGCMC 3 cut(s) 548, 1021, 1227
BstUI CGCG 1 cut(s) 711
BstV1I GCAGC 2 cut(s) 544, 750
BstV2I GAAGAC 2 cut(s) 5, 307
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
Bsu36I CCTNAGG 1 cut(s) 617
BsuRI GGCC 4 cut(s) 546, 735, 877, 902
BtsCI GGATG 4 cut(s) 849, 996, 1048, 1254
BtsI GCAGTG 1 cut(s) 575
BtsIMutI CAGTG 3 cut(s) 575, 590, 959
Cac8I GCNNGC 7 cut(s) 43, 103, 168, 212, 613, 711, 922
CfoI GCGC 5 cut(s) 41, 557, 711, 713, 1200
Cfr10I RCCGGY 3 cut(s) 210, 357, 920
Cfr13I GGNCC 3 cut(s) 281, 544, 545
CseI GACGC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 55, 391
CviAII CATG 3 cut(s) 531, 612, 767
CviQI GTAC 2 cut(s) 55, 391
DdeI CTNAG 7 cut(s) 474, 479, 617, 648, 807, 930, 1153
DinI GGCGCC 1 cut(s) 40
DpnI GATC 8 cut(s) 155, 300, 381, 387, 427, 453, 1146, 1158
DpnII GATC 8 cut(s) 153, 298, 379, 385, 425, 451, 1144, 1156
DraIII CACNNNGTG 1 cut(s) 602
DrdI GACNNNNNNGTC 1 cut(s) 1000
DseDI GACNNNNNNGTC 1 cut(s) 1000
EaeI YGGCCR 2 cut(s) 875, 900
Eam1104I CTCTTC 1 cut(s) 974
EarI CTCTTC 1 cut(s) 974
EciI GGCGGA 2 cut(s) 536, 1155
Eco24I GRGCYC 3 cut(s) 229, 548, 583
Eco31I GGTCTC 1 cut(s) 348
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 1 cut(s) 281
Eco47III AGCGCT 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 836, 983
Eco81I CCTNAGG 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 544
EcoRI GAATTC 2 cut(s) 303, 629
EcoRII CCWGG 1 cut(s) 535
EcoRV GATATC 1 cut(s) 859
EcoT38I GRGCYC 3 cut(s) 229, 548, 583
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 3 cut(s) 534, 615, 770
FaiI YATR 9 cut(s) 288, 323, 450, 532, 613, 768, 1029, 1173, 1235
FaqI GGGAC 4 cut(s) 500, 763, 817, 860
FatI CATG 3 cut(s) 530, 611, 766
FauI CCCGC 4 cut(s) 207, 794, 837, 1101
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 558, 764, 812
FokI GGATG 4 cut(s) 836, 1003, 1055, 1261
FriOI GRGCYC 3 cut(s) 229, 548, 583
Fsp4HI GCNGC 3 cut(s) 558, 764, 812
FspBI CTAG 3 cut(s) 102, 440, 576
GlaI GCGC 5 cut(s) 40, 556, 710, 712, 1199
GluI GCNGC 3 cut(s) 558, 764, 812
GsuI CTGGAG 2 cut(s) 213, 558
HaeII RGCGCY 2 cut(s) 42, 558
HaeIII GGCC 4 cut(s) 546, 735, 877, 902
HapII CCGG 7 cut(s) 36, 211, 259, 358, 626, 903, 921
HgaI GACGC 1 cut(s) 216
HhaI GCGC 5 cut(s) 41, 557, 711, 713, 1200
Hin1I GRCGYC 2 cut(s) 39, 208
Hin1II CATG 3 cut(s) 534, 615, 770
Hin6I GCGC 5 cut(s) 39, 555, 709, 711, 1198
HinP1I GCGC 5 cut(s) 39, 555, 709, 711, 1198
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 3 cut(s) 476, 869, 935
HinfI GANTC 5 cut(s) 243, 340, 751, 906, 950
HpaII CCGG 7 cut(s) 36, 211, 259, 358, 626, 903, 921
HphI GGTGA 6 cut(s) 676, 895, 1061, 1073, 1267, 1279
Hpy166II GTNNAC 2 cut(s) 281, 397
Hpy188I TCNGA 8 cut(s) 25, 204, 640, 699, 911, 1073, 1156, 1279
Hpy188III TCNNGA 6 cut(s) 230, 377, 383, 862, 893, 1005
Hpy8I GTNNAC 2 cut(s) 281, 397
Hpy99I CGWCG 6 cut(s) 164, 494, 497, 662, 1037, 1243
HpyAV CCTTC 8 cut(s) 379, 637, 740, 811, 827, 1073, 1279, 1318
HpyCH4IV ACGT 4 cut(s) 122, 393, 758, 1304
HpyCH4V TGCA 4 cut(s) 30, 45, 560, 766
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 552, 653, 715, 724
HpyF3I CTNAG 7 cut(s) 474, 479, 617, 648, 807, 930, 1153
HpySE526I ACGT 4 cut(s) 122, 393, 758, 1304
Hsp92I GRCGYC 2 cut(s) 39, 208
Hsp92II CATG 3 cut(s) 534, 615, 770
HspAI GCGC 5 cut(s) 39, 555, 709, 711, 1198
KasI GGCGCC 1 cut(s) 38
KroI GCCGGC 2 cut(s) 210, 920
KroNI GCCGGC 2 cut(s) 212, 922
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 8 cut(s) 153, 298, 379, 385, 425, 451, 1144, 1156
LguI GCTCTTC 1 cut(s) 974
LmnI GCTCC 3 cut(s) 232, 366, 523
Lsp1109I GCAGC 2 cut(s) 544, 750
MaeI CTAG 3 cut(s) 102, 440, 576
MaeII ACGT 4 cut(s) 122, 393, 758, 1304
MaeIII GTNAC 3 cut(s) 604, 1049, 1255
MalI GATC 8 cut(s) 155, 300, 381, 387, 427, 453, 1146, 1158
MboI GATC 8 cut(s) 153, 298, 379, 385, 425, 451, 1144, 1156
MboII GAAGA 5 cut(s) 5, 109, 118, 307, 961
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 5 cut(s) 229, 548, 583, 1021, 1227
MluCI AATT 9 cut(s) 136, 290, 303, 510, 629, 634, 689, 914, 1177
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 2 cut(s) 237, 745
MmeI TCCRAC 1 cut(s) 1272
MreI CGCCGGCG 1 cut(s) 210
MroNI GCCGGC 2 cut(s) 210, 920
MroXI GAANNNNTTC 1 cut(s) 968
MspA1I CMGCKG 3 cut(s) 998, 1059, 1265
MspI CCGG 7 cut(s) 36, 211, 259, 358, 626, 903, 921
MspR9I CCNGG 2 cut(s) 260, 537
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 537
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 5 cut(s) 36, 552, 653, 715, 724
NaeI GCCGGC 2 cut(s) 212, 922
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 1 cut(s) 260
NdeII GATC 8 cut(s) 153, 298, 379, 385, 425, 451, 1144, 1156
NgoMIV GCCGGC 2 cut(s) 210, 920
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 3 cut(s) 534, 615, 770
NlaIV GGNNCC 6 cut(s) 40, 228, 257, 362, 545, 546
NmuCI GTSAC 3 cut(s) 604, 1049, 1255
NspI RCATGY 1 cut(s) 615
PaeI GCATGC 1 cut(s) 615
PauI GCGCGC 1 cut(s) 709
PciSI GCTCTTC 1 cut(s) 974
PctI GAATGC 1 cut(s) 32
PdiI GCCGGC 2 cut(s) 212, 922
PdmI GAANNNNTTC 1 cut(s) 968
PfeI GAWTC 3 cut(s) 340, 906, 950
PflMI CCANNNNNTGG 2 cut(s) 236, 536
PkrI GCNGC 3 cut(s) 559, 765, 813
PleI GAGTC 2 cut(s) 237, 745
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 2 cut(s) 237, 745
Psp6I CCWGG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 6 cut(s) 40, 228, 257, 362, 545, 546
PspOMI GGGCCC 1 cut(s) 544
PspPI GGNCC 3 cut(s) 281, 544, 545
PstI CTGCAG 2 cut(s) 47, 562
PsuI RGATCY 1 cut(s) 425
PteI GCGCGC 1 cut(s) 709
RsaI GTAC 2 cut(s) 56, 392
RsaNI GTAC 2 cut(s) 55, 391
SapI GCTCTTC 1 cut(s) 974
SatI GCNGC 3 cut(s) 558, 764, 812
Sau3AI GATC 8 cut(s) 153, 298, 379, 385, 425, 451, 1144, 1156
Sau96I GGNCC 3 cut(s) 281, 544, 545
SchI GAGTC 2 cut(s) 237, 745
ScrFI CCNGG 2 cut(s) 260, 537
SduI GDGCHC 5 cut(s) 229, 548, 583, 1021, 1227
SfcI CTRYAG 2 cut(s) 43, 558
SfoI GGCGCC 1 cut(s) 40
SgrAI CRCCGGYG 1 cut(s) 210
SinI GGWCC 1 cut(s) 281
SphI GCATGC 1 cut(s) 615
Sse9I AATT 9 cut(s) 136, 290, 303, 510, 629, 634, 689, 914, 1177
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 3 cut(s) 102, 440, 576
StyD4I CCNGG 2 cut(s) 258, 535
TaiI ACGT 4 cut(s) 125, 396, 761, 1307
TaqI TCGA 8 cut(s) 59, 152, 264, 301, 378, 587, 948, 1004
TasI AATT 9 cut(s) 136, 290, 303, 510, 629, 634, 689, 914, 1177
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 814
TfiI GAWTC 3 cut(s) 340, 906, 950
TscAI CASTG 3 cut(s) 575, 597, 966
TseFI GTSAC 3 cut(s) 604, 1049, 1255
TseI GCWGC 2 cut(s) 557, 763
Tsp45I GTSAC 3 cut(s) 604, 1049, 1255
TspDTI ATGAA 4 cut(s) 303, 1092, 1298, 1337
TspGWI ACGGA 3 cut(s) 81, 316, 510
TspRI CASTG 3 cut(s) 575, 597, 966
Van91I CCANNNNNTGG 2 cut(s) 236, 536
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 4 cut(s) 303, 629, 689, 914
XceI RCATGY 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 968
XspI CTAG 3 cut(s) 102, 440, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.