Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

46129540 .. 46130370

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG246800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACAACACCCAAAGGCAACTTGATAATCACTGTGCTGCCCTCCGCCGTAAAATTAAATTGTTGATTTGTGGAGTAGCCGTGGTAATTTGTCTTATCTTCTTTATGAGTTTGGTCCTCACCAAGAGCCCGAATAACGTCAACTGTCATGTAACCAGTGCATTGCTCACCGATTCCAACCTCACCGTTGAGATCACTATTCGAAACCCGAACAGTTTCTACCGTGTCCACCATGATCACATTGACATTACTGCCAACTACAAAAACCAGACGTTGGGTTCGACATTGAATTATGCCTCCTTCTCGCAAGGACGTAATCGCGAAACACGGCTAACACCGTCCTTCGACGGGCTGATCCTTGGCGGAGGCGATGACCTCCGCGGGTCGAACAACTGCGGAAATAACTATTACGATATTATTGTCAAGCTCAACATGCAGGACGAGTACAAGAAACAGATTGTTCCCAAGAAGAGATTTCAAAGGAATTTGGAGTATACGTGCGAGTTGAAGGTTCCTTCTGGCAGTGGGAGTAGCTTCAACACCACCCTGTGCCGCTATCTACAAATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

190

Amino Acids

21.51

Weight (kDa)

9.11

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	65 - 113	7.3e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	494
AccII	CGCG	2 cut(s)	321, 381
AciI	CCGC	6 cut(s)	46, 363, 379, 381, 396, 553
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	484, 564
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	274, 348
AgsI	TTSAA	4 cut(s)	289, 479, 508, 538
AluBI	AGCT	2 cut(s)	427, 534
AluI	AGCT	2 cut(s)	427, 534
AlwI	GGATC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	484, 564
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
Asp700I	GAANNNNTTC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	112, 160, 175
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	25
BceAI	ACGGC	3 cut(s)	33, 65, 344
BclI	TGATCA	1 cut(s)	235
BisI	GCNGC	2 cut(s)	39, 553
BlsI	GCNGC	2 cut(s)	40, 554
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	81, 358, 379
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 348
Bse1I	ACTGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	81, 358, 379
BseLI	CCNNNNNNNGG	2 cut(s)	274, 348
BseMI	GCAATG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	321, 381
BslI	CCNNNNNNNGG	2 cut(s)	274, 348
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	192, 235, 354
Bsp68I	TCGCGA	1 cut(s)	321
BspACI	CCGC	6 cut(s)	46, 363, 379, 381, 396, 553
BspFNI	CGCG	2 cut(s)	321, 381
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	3 cut(s)	81, 358, 379
BssMI	GATC	3 cut(s)	192, 235, 354
BssNAI	GTATAC	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	358
Bst1107I	GTATAC	1 cut(s)	495
Bst4CI	ACNGT	6 cut(s)	35, 146, 187, 215, 224, 339
Bst6I	CTCTTC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	202
BstDSI	CCRYGG	2 cut(s)	81, 379
BstFNI	CGCG	2 cut(s)	321, 381
BstKTI	GATC	3 cut(s)	195, 238, 357
BstMBI	GATC	3 cut(s)	192, 235, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	436
BstUI	CGCG	2 cut(s)	321, 381
BstV1I	GCAGC	1 cut(s)	25
BstZ17I	GTATAC	1 cut(s)	495
BtgI	CCRYGG	2 cut(s)	81, 379
BtgZI	GCGATG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	3 cut(s)	31, 163, 529
BtuMI	TCGCGA	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	115
Cfr42I	CCGCGG	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	4 cut(s)	149, 233, 433, 570
CviJI	RGCY	6 cut(s)	80, 129, 331, 352, 427, 534
CviKI_1	RGCY	6 cut(s)	80, 129, 331, 352, 427, 534
CviQI	GTAC	1 cut(s)	445
DpnI	GATC	3 cut(s)	194, 237, 356
DpnII	GATC	3 cut(s)	192, 235, 354
DraIII	CACNNNGTG	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
EciI	GGCGGA	2 cut(s)	35, 378
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	4 cut(s)	152, 236, 436, 573
FaiI	YATR	7 cut(s)	107, 150, 234, 294, 434, 495, 571
FatI	CATG	4 cut(s)	148, 232, 432, 569
FauI	CCCGC	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	2 cut(s)	39, 553
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	39, 553
GluI	GCNGC	2 cut(s)	39, 553
Hin1II	CATG	4 cut(s)	152, 236, 436, 573
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	173
HphI	GGTGA	3 cut(s)	112, 160, 175
Hpy166II	GTNNAC	3 cut(s)	142, 229, 495
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	3 cut(s)	142, 229, 495
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	310, 352, 502, 525
HpyCH4III	ACNGT	6 cut(s)	35, 146, 187, 215, 224, 339
HpyCH4IV	ACGT	4 cut(s)	138, 272, 313, 497
HpyCH4V	TGCA	2 cut(s)	161, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpySE526I	ACGT	4 cut(s)	138, 272, 313, 497
Hsp92II	CATG	4 cut(s)	152, 236, 436, 573
Ksp22I	TGATCA	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	192, 235, 354
LpnPI	CCDG	5 cut(s)	169, 281, 422, 504, 560
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	4 cut(s)	138, 272, 313, 497
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	194, 237, 356
MboI	GATC	3 cut(s)	192, 235, 354
MboII	GAAGA	2 cut(s)	91, 481
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	6 cut(s)	54, 59, 87, 289, 484, 564
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	6 cut(s)	53, 128, 191, 307, 359, 386
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	381
MvnI	CGCG	2 cut(s)	321, 381
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeII	GATC	3 cut(s)	192, 235, 354
NlaIII	CATG	4 cut(s)	152, 236, 436, 573
NlaIV	GGNNCC	1 cut(s)	513
NruI	TCGCGA	1 cut(s)	321
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	40, 554
Ppu21I	YACGTR	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	115
PsrI	GAACNNNNNNTAC	2 cut(s)	203, 235
RruI	TCGCGA	1 cut(s)	321
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SacII	CCGCGG	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	39, 553
Sau3AI	GATC	3 cut(s)	192, 235, 354
Sau96I	GGNCC	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	9 cut(s)	141, 183, 275, 316, 378, 429, 500, 513, 536
Sfr303I	CCGCGG	1 cut(s)	382
SfuI	TTCGAA	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	115
Sse9I	AATT	6 cut(s)	54, 59, 87, 289, 484, 564
SsiI	CCGC	6 cut(s)	46, 363, 379, 381, 396, 553
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	6 cut(s)	35, 146, 187, 215, 224, 339
TaiI	ACGT	4 cut(s)	141, 275, 316, 500
TaqI	TCGA	4 cut(s)	202, 281, 345, 386
TasI	AATT	6 cut(s)	54, 59, 87, 289, 484, 564
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	3 cut(s)	38, 163, 529
TseI	GCWGC	1 cut(s)	38
TspRI	CASTG	3 cut(s)	38, 163, 529
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	2 cut(s)	484, 564
XceI	RCATGY	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.