Rh4DG072900
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001606
Physical Location & Seq
Reverse (-)
10773899 .. 10778428
4530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG072900.1

Sequence Viewer

Length: 630 bp
ATGCACCATGCCGTCGCGCGGCGTCTTCAGCCCAGAAAAGCTTCTGACCATCGGCTCAACATCCGACTATCTGTCGCCCTCCGCACGCCTCCAGATGCCGCCCATATCATCCTTCCAAACGCAAATCTAGGTCCGCCGTACACAACCACGACCAGGGACGAGGTTCCCTGCCCCTATTGCTGGCTGACAACCGCTCGACCTGCTCACCACCGCGTCCACCGTACTACCCCTATCCACCACCAGAATCGGAAAGCTATTCCACCATCCGATCCTCCAATGGCTTCGAGAATCACAGTAATAACTCCGCCGCAAGGAAGAGAAACGAGGCAAACAGCCTTCGCCGCTACACCAGATCCCCACCACGCCACCGGAGTCACCCAACCCAACTGTATCATTCTGGCTATTTCCGCTGCCAACCAAGATCTTGCTACGTCTGATGCAATTAAGATCTGTCGTGAAGTAGATCCCAAAGGAAAAAGGAAAAAAGACAGAGCTTTATTAATAGAACTCAGGAATTGCAAACAAGGAGAGAGATATAACACAATATCACAACTCATCATTCATCTAGTGAAAACAGAAGAACAAATGGGATATAAGTATGGCGAGGCTTGCTTTCGTTTATGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

209

Amino Acids

23.5

Weight (kDa)

9.8

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AccBSI CCGCTC 1 cut(s) 194
AccII CGCG 3 cut(s) 17, 19, 213
AclWI GGATC 3 cut(s) 263, 347, 458
AcuI CTGAAG 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 2 cut(s) 140, 223
AfiI CCNNNNNNNGG 4 cut(s) 18, 153, 180, 311
AhdI GACNNNNNGTC 1 cut(s) 71
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 41, 254, 494
AluI AGCT 3 cut(s) 41, 254, 494
AlwI GGATC 3 cut(s) 263, 347, 458
ApeKI GCWGC 1 cut(s) 410
AseI ATTAAT 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 40
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 197, 367
AvaII GGWCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 57, 271
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 154
BfaI CTAG 3 cut(s) 128, 566, 628
BfuAI ACCTGC 1 cut(s) 208
BglII AGATCT 2 cut(s) 421, 447
BisI GCNGC 5 cut(s) 20, 99, 308, 342, 411
BlsI GCNGC 5 cut(s) 21, 100, 309, 343, 412
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 85, 427
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 153, 180, 311
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 60, 108, 263
BseLI CCNNNNNNNGG 4 cut(s) 18, 153, 180, 311
BseMII CTCAG 1 cut(s) 523
BseXI GCAGC 1 cut(s) 397
Bsh1236I CGCG 3 cut(s) 17, 19, 213
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 4 cut(s) 18, 153, 180, 311
BsmFI GGGAC 1 cut(s) 170
Bsp143I GATC 5 cut(s) 268, 352, 421, 447, 463
BspCNI CTCAG 1 cut(s) 522
BspFNI CGCG 3 cut(s) 17, 19, 213
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 3 cut(s) 263, 347, 458
BsrBI CCGCTC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 5 cut(s) 268, 352, 421, 447, 463
BssNI GRCGYC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 221, 295, 389
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 86, 182, 610
BstDEI CTNAG 1 cut(s) 509
BstF5I GGATG 3 cut(s) 60, 108, 263
BstFNI CGCG 3 cut(s) 17, 19, 213
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 5 cut(s) 271, 355, 424, 450, 466
BstMBI GATC 5 cut(s) 268, 352, 421, 447, 463
BstMWI GCNNNNNNNGC 6 cut(s) 28, 177, 200, 341, 407, 609
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstUI CGCG 3 cut(s) 17, 19, 213
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 4 cut(s) 352, 421, 447, 463
BstYI RGATCY 4 cut(s) 352, 421, 447, 463
BtsCI GGATG 3 cut(s) 60, 108, 263
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 3 cut(s) 86, 182, 610
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 2 cut(s) 11, 202
Csp6I GTAC 2 cut(s) 139, 222
CviAII CATG 1 cut(s) 8
CviQI GTAC 2 cut(s) 139, 222
DdeI CTNAG 1 cut(s) 509
DpnI GATC 5 cut(s) 270, 354, 423, 449, 465
DpnII GATC 5 cut(s) 268, 352, 421, 447, 463
DriI GACNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 310
Eam1105I GACNNNNNGTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 2 cut(s) 123, 294
Eco47I GGWCC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 11
FaiI YATR 6 cut(s) 9, 105, 537, 594, 600, 622
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 5 cut(s) 20, 99, 308, 342, 411
FokI GGATG 3 cut(s) 47, 95, 250
Fsp4HI GCNGC 5 cut(s) 20, 99, 308, 342, 411
FspBI CTAG 3 cut(s) 128, 566, 628
GlaI GCGC 1 cut(s) 18
GluI GCNGC 5 cut(s) 20, 99, 308, 342, 411
GsuI CTGGAG 1 cut(s) 75
HapII CCGG 1 cut(s) 369
HgaI GACGC 2 cut(s) 11, 202
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 3 cut(s) 244, 288, 372
HpaII CCGG 1 cut(s) 369
HphI GGTGA 2 cut(s) 197, 367
Hpy166II GTNNAC 2 cut(s) 141, 217
Hpy188I TCNGA 5 cut(s) 46, 65, 249, 268, 436
Hpy188III TCNNGA 4 cut(s) 92, 285, 455, 511
Hpy8I GTNNAC 2 cut(s) 141, 217
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 122, 346
HpyCH4III ACNGT 3 cut(s) 221, 295, 389
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 4, 440, 519
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 177, 200, 341, 407, 609
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 1 cut(s) 431
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 5 cut(s) 268, 352, 421, 447, 463
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 2 cut(s) 85, 427
MaeI CTAG 3 cut(s) 128, 566, 628
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 373
MalI GATC 5 cut(s) 270, 354, 423, 449, 465
MbiI CCGCTC 1 cut(s) 194
MboI GATC 5 cut(s) 268, 352, 421, 447, 463
MboII GAAGA 3 cut(s) 17, 327, 590
MflI RGATCY 4 cut(s) 352, 421, 447, 463
MluCI AATT 2 cut(s) 441, 514
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 6 cut(s) 89, 99, 154, 282, 318, 598
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 2 cut(s) 444, 500
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 3 cut(s) 17, 19, 213
MwoI GCNNNNNNNGC 6 cut(s) 28, 177, 200, 341, 407, 609
NdeII GATC 5 cut(s) 268, 352, 421, 447, 463
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 244, 288
PkrI GCNGC 5 cut(s) 21, 100, 309, 343, 412
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PshBI ATTAAT 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 131
PsuI RGATCY 4 cut(s) 352, 421, 447, 463
RsaI GTAC 2 cut(s) 140, 223
RsaNI GTAC 2 cut(s) 139, 222
SaqAI TTAA 2 cut(s) 444, 500
SatI GCNGC 5 cut(s) 20, 99, 308, 342, 411
Sau3AI GATC 5 cut(s) 268, 352, 421, 447, 463
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 154
SetI ASST 7 cut(s) 43, 133, 165, 202, 256, 434, 496
SfaNI GCATC 2 cut(s) 85, 427
SinI GGWCC 1 cut(s) 131
Sse9I AATT 2 cut(s) 441, 514
SspMI CTAG 3 cut(s) 128, 566, 628
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 3 cut(s) 221, 295, 389
TaiI ACGT 1 cut(s) 434
TaqI TCGA 2 cut(s) 196, 284
TasI AATT 2 cut(s) 441, 514
TauI GCSGC 4 cut(s) 22, 101, 310, 344
TfiI GAWTC 2 cut(s) 244, 288
Tru1I TTAA 2 cut(s) 444, 500
Tru9I TTAA 2 cut(s) 444, 500
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 131
VspI ATTAAT 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 3 cut(s) 128, 566, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.