Rh3CG240200

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001606
Physical Location & Seq
Forward (+)
23026023 .. 23026286
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG240200.1

Sequence Viewer

Length: 264 bp
ATGGGTCTTCGTCTTCCTCTATCAGAATGCAACTCCAGCGCCGGCAGAGTGCTGTACTCGAAGCTCGTCTGCTTCAAGCAACCCTCCGCTCCTTTTCCGGCTAGCTTCTCCACATTCTTCACGTTCTCCGTCAGCAATTTGAACCCCTCCTCGATCGGCGGCGGGCTGGCTTTTATCATCTCACCGGACTATGAGGTTGTCGGAGACGTCGGCGGGTTCTTGGGGCTCCAGAGCATGGAGGACCTGGTTCGGGTTCCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

87

Amino Acids

9.18

Weight (kDa)

4.99

Isoelectric Point (pI)

62.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 5 - 78 1.9e-13 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 4 cut(s) 87, 159, 162, 213
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 235, 250
AgsI TTSAA 2 cut(s) 76, 142
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 2 cut(s) 64, 105
AluI AGCT 2 cut(s) 64, 105
Alw26I GTCTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 245, 258
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 227, 255
BmrFI CCNGG 2 cut(s) 245, 258
BmtI GCTAGC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 5
BpmI CTGGAG 2 cut(s) 19, 212
BpuMI CCSGG 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 250
Bse118I RCCGGY 1 cut(s) 41
BseBI CCWGG 1 cut(s) 245
BseLI CCNNNNNNNGG 2 cut(s) 235, 250
BseRI GAGGAG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 4 cut(s) 42, 98, 185, 257
BslI CCNNNNNNNGG 2 cut(s) 235, 250
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 4 cut(s) 87, 159, 162, 213
BspLI GGNNCC 2 cut(s) 227, 255
BspOI GCTAGC 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 43, 103, 164, 168
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 243, 256
BstV2I GAAGAC 1 cut(s) 5
Cac8I GCNNGC 4 cut(s) 43, 103, 164, 168
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 241
CsiI ACCWGGT 1 cut(s) 243
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 235
CviJI RGCY 6 cut(s) 64, 101, 105, 166, 170, 226
CviKI_1 RGCY 6 cut(s) 64, 101, 105, 166, 170, 226
CviQI GTAC 1 cut(s) 55
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 1 cut(s) 238
FaiI YATR 2 cut(s) 192, 236
FatI CATG 1 cut(s) 234
FauI CCCGC 2 cut(s) 155, 206
Fnu4HI GCNGC 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 160
GsuI CTGGAG 2 cut(s) 19, 212
HaeII RGCGCY 1 cut(s) 42
HapII CCGG 4 cut(s) 42, 98, 185, 257
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HpaII CCGG 4 cut(s) 42, 98, 185, 257
HphI GGTGA 1 cut(s) 174
Hpy188I TCNGA 2 cut(s) 25, 203
Hpy188III TCNNGA 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 122, 207
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpySE526I ACGT 2 cut(s) 122, 207
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 39
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 94, 231
LpnPI CCDG 8 cut(s) 49, 55, 111, 152, 198, 230, 242, 257
MabI ACCWGGT 1 cut(s) 243
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 122, 207
MalI GATC 1 cut(s) 155
MbiI CCGCTC 1 cut(s) 89
MboI GATC 1 cut(s) 153
MboII GAAGA 2 cut(s) 5, 109
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 6 cut(s) 27, 94, 157, 160, 187, 232
MroNI GCCGGC 1 cut(s) 41
MspI CCGG 4 cut(s) 42, 98, 185, 257
MspR9I CCNGG 2 cut(s) 245, 258
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 36
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 258
NdeII GATC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 41
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 227, 255
PctI GAATGC 1 cut(s) 32
PdiI GCCGGC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 1 cut(s) 161
Ple19I CGATCG 1 cut(s) 156
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 227, 255
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 245, 258
SduI GDGCHC 1 cut(s) 228
SetI ASST 6 cut(s) 66, 107, 125, 198, 210, 246
SexAI ACCWGGT 1 cut(s) 243
SinI GGWCC 1 cut(s) 241
Sse9I AATT 1 cut(s) 136
SsiI CCGC 4 cut(s) 87, 159, 162, 213
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 243, 256
TaiI ACGT 2 cut(s) 125, 210
TaqI TCGA 2 cut(s) 59, 152
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 241
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.