Rmu_sc0002002.1_g000011

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002002.1
OG0001606
Physical Location & Seq
Forward (+)
26055 .. 28221
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002002.1_g000011.1.cds

Sequence Viewer

Length: 693 bp
atgccagagaaaccaaagcgacgagtgatcgatcttgtcctcatcaccctcagcagcctcaagctcctcggcgacacccacttgaataatggcagcgtgcgtctcactcacgaccttgccgtccccaactccagcgccggcagagtgctgtactcgaagcccgtcctctttaagcaaccctccactccgtttccggccaccttttccacattcttcacattctccgtcagcaatttgaacccctcctcgatcggtagcgggctggcttttatcatctcgccggatgatgaggttgtcagagacgctggcgggttcttggggctccagagcgtggaggacccgggttcgggttccgggtcgagcttcatggaggtggagttcgacacgctcatggacgtggagttcaaggacattaatagcaaccatgtgggcctagatctcaactccatggtttcatcacaggtcggcgatcttggcgctgcggatattgatctcaagagcagggacctcgtgaattgctggatcgaattcggcaggtcgagtcgggagaaagaaagtgatgatcggaagcagggtcaactgacggtgtcttctaacattacaagattgcctatcggaggaggagaggtggctgagcttagtggggatgatgacggaggtggagatggaattgttgcggcggagcttccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

230

Amino Acids

24.46

Weight (kDa)

4.51

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 525
AccB7I CCANNNNNTGG 1 cut(s) 331
AciI CCGC 5 cut(s) 258, 309, 482, 677, 680
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 1 cut(s) 527
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 4 cut(s) 331, 346, 347, 617
AgsI TTSAA 3 cut(s) 85, 238, 406
AjiI CACGTC 1 cut(s) 397
AloI GAACNNNNNNTCC 4 cut(s) 362, 386, 394, 418
AluBI AGCT 4 cut(s) 64, 363, 637, 685
AluI AGCT 4 cut(s) 64, 363, 637, 685
Alw26I GTCTC 2 cut(s) 107, 294
AlwI GGATC 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 2 cut(s) 195, 430
ApeKI GCWGC 3 cut(s) 54, 93, 479
ApoI RAATTY 1 cut(s) 527
AseI ATTAAT 1 cut(s) 414
AspLEI GCGC 2 cut(s) 137, 479
AspS9I GGNCC 3 cut(s) 337, 430, 505
AsuC2I CCSGG 3 cut(s) 341, 342, 355
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 2 cut(s) 337, 505
BanII GRGCYC 1 cut(s) 324
BauI CACGAG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 582
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 3 cut(s) 66, 105, 466
BccI CCATC 1 cut(s) 659
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BcnI CCSGG 3 cut(s) 341, 342, 355
BcoDI GTCTC 2 cut(s) 107, 294
BfaI CTAG 1 cut(s) 434
BfoI RGCGCY 2 cut(s) 138, 480
BfuAI ACCTGC 1 cut(s) 525
BglII AGATCT 1 cut(s) 436
BisI GCNGC 4 cut(s) 55, 94, 480, 678
BlpI GCTNAGC 1 cut(s) 633
BlsI GCNGC 4 cut(s) 56, 95, 481, 679
Bme1390I CCNGG 3 cut(s) 341, 342, 355
Bme18I GGWCC 2 cut(s) 337, 505
BmeT110I CYCGRG 1 cut(s) 340
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 3 cut(s) 337, 430, 505
BmiI GGNNCC 4 cut(s) 323, 339, 352, 506
BmrFI CCNGG 3 cut(s) 341, 342, 355
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 2 cut(s) 115, 308
Bpu10I CCTNAGC 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 633
BpuEI CTTGAG 2 cut(s) 44, 479
BpuMI CCSGG 3 cut(s) 341, 342, 355
Bsa29I ATCGAT 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 67, 340, 447
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 612, 642
Bsc4I CCNNNNNNNGG 4 cut(s) 331, 346, 347, 617
Bse118I RCCGGY 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 489
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 3 cut(s) 67, 340, 447
BseGI GGATG 2 cut(s) 289, 652
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 4 cut(s) 331, 346, 347, 617
BseMII CTCAG 2 cut(s) 64, 624
BseRI GAGGAG 4 cut(s) 56, 235, 633, 636
BseXI GCAGC 3 cut(s) 66, 105, 466
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 197, 432
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 5 cut(s) 138, 194, 281, 341, 354
BslFI GGGAC 2 cut(s) 107, 518
BslI CCNNNNNNNGG 4 cut(s) 331, 346, 347, 617
BsmAI GTCTC 2 cut(s) 107, 294
BsmBI CGTCTC 2 cut(s) 107, 294
BsmFI GGGAC 2 cut(s) 107, 518
BsnI GGCC 2 cut(s) 197, 432
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 8 cut(s) 27, 31, 249, 436, 469, 490, 522, 562
Bsp1720I GCTNAGC 1 cut(s) 633
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 5 cut(s) 258, 309, 482, 677, 680
BspANI GGCC 2 cut(s) 197, 432
BspCNI CTCAG 2 cut(s) 63, 625
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 4 cut(s) 323, 339, 352, 506
BspMI ACCTGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 67, 340, 447
BssMI GATC 8 cut(s) 27, 31, 249, 436, 469, 490, 522, 562
BssSI CACGAG 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 509
Bst4CI ACNGT 1 cut(s) 586
BstC8I GCNNGC 5 cut(s) 98, 139, 260, 264, 307
BstDEI CTNAG 3 cut(s) 50, 633, 638
BstDSI CCRYGG 1 cut(s) 447
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 2 cut(s) 289, 652
BstH2I RGCGCY 2 cut(s) 138, 480
BstHHI GCGC 2 cut(s) 137, 479
BstKTI GATC 8 cut(s) 30, 34, 252, 439, 472, 493, 525, 565
BstMAI GTCTC 2 cut(s) 107, 294
BstMBI GATC 8 cut(s) 27, 31, 249, 436, 469, 490, 522, 562
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstSCI CCNGG 3 cut(s) 339, 340, 353
BstV1I GCAGC 3 cut(s) 66, 105, 466
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 2 cut(s) 197, 432
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 447
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 2 cut(s) 289, 652
BveI ACCTGC 1 cut(s) 525
Cac8I GCNNGC 5 cut(s) 98, 139, 260, 264, 307
CfoI GCGC 2 cut(s) 137, 479
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 337, 430, 505
Cfr9I CCCGGG 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 2 cut(s) 89, 311
Csp6I GTAC 1 cut(s) 151
CviAII CATG 5 cut(s) 367, 391, 425, 448, 690
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 50, 633, 638
DpnI GATC 8 cut(s) 29, 33, 251, 438, 471, 492, 524, 564
DpnII GATC 8 cut(s) 27, 31, 249, 436, 469, 490, 522, 562
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 337, 505
Eco88I CYCGRG 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoO109I RGGNCCY 2 cut(s) 337, 505
EcoRI GAATTC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 447
Esp3I CGTCTC 2 cut(s) 107, 294
FaeI CATG 5 cut(s) 370, 394, 428, 451, 693
FaiI YATR 5 cut(s) 368, 392, 426, 449, 691
FaqI GGGAC 2 cut(s) 107, 518
FatI CATG 5 cut(s) 366, 390, 424, 447, 689
FauI CCCGC 2 cut(s) 251, 302
Fnu4HI GCNGC 4 cut(s) 55, 94, 480, 678
FokI GGATG 2 cut(s) 296, 659
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 4 cut(s) 55, 94, 480, 678
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 136, 478
GluI GCNGC 4 cut(s) 55, 94, 480, 678
GsuI CTGGAG 2 cut(s) 115, 308
HaeII RGCGCY 2 cut(s) 138, 480
HaeIII GGCC 2 cut(s) 197, 432
HapII CCGG 5 cut(s) 138, 194, 281, 341, 354
HgaI GACGC 2 cut(s) 89, 311
HhaI GCGC 2 cut(s) 137, 479
Hin1II CATG 5 cut(s) 370, 394, 428, 451, 693
Hin6I GCGC 2 cut(s) 135, 477
HinP1I GCGC 2 cut(s) 135, 477
HincII GTYRAC 1 cut(s) 578
HindII GTYRAC 1 cut(s) 578
HinfI GANTC 1 cut(s) 541
HpaII CCGG 5 cut(s) 138, 194, 281, 341, 354
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 578
Hpy188I TCNGA 3 cut(s) 299, 567, 617
Hpy188III TCNNGA 5 cut(s) 110, 325, 496, 511, 545
Hpy8I GTNNAC 1 cut(s) 578
Hpy99I CGWCG 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
HpyF3I CTNAG 3 cut(s) 50, 633, 638
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 5 cut(s) 370, 394, 428, 451, 693
HspAI GCGC 2 cut(s) 135, 477
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 8 cut(s) 27, 31, 249, 436, 469, 490, 522, 562
LmnI GCTCC 3 cut(s) 69, 327, 682
Lsp1109I GCAGC 3 cut(s) 66, 105, 466
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 396
MalI GATC 8 cut(s) 29, 33, 251, 438, 471, 492, 524, 564
MboI GATC 8 cut(s) 27, 31, 249, 436, 469, 490, 522, 562
MboII GAAGA 2 cut(s) 205, 582
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 4 cut(s) 232, 514, 527, 669
MlyI GAGTC 1 cut(s) 550
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 2 cut(s) 171, 414
MslI CAYNNNNRTG 3 cut(s) 371, 389, 395
MspI CCGG 5 cut(s) 138, 194, 281, 341, 354
MspR9I CCNGG 3 cut(s) 341, 342, 355
MwoI GCNNNNNNNGC 1 cut(s) 474
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 3 cut(s) 341, 342, 355
NcoI CCATGG 1 cut(s) 447
NdeII GATC 8 cut(s) 27, 31, 249, 436, 469, 490, 522, 562
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 5 cut(s) 370, 394, 428, 451, 693
NlaIV GGNNCC 4 cut(s) 323, 339, 352, 506
NmeAIII GCCGAG 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 139
PflFI GACNNNGTC 1 cut(s) 586
PflMI CCANNNNNTGG 1 cut(s) 331
PkrI GCNGC 4 cut(s) 56, 95, 481, 679
Ple19I CGATCG 1 cut(s) 252
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
PpuMI RGGWCCY 2 cut(s) 337, 505
PshBI ATTAAT 1 cut(s) 414
Psp5II RGGWCCY 2 cut(s) 337, 505
PspN4I GGNNCC 4 cut(s) 323, 339, 352, 506
PspPI GGNCC 3 cut(s) 337, 430, 505
PspPPI RGGWCCY 2 cut(s) 337, 505
PsuI RGATCY 1 cut(s) 436
PsyI GACNNNGTC 1 cut(s) 586
PvuI CGATCG 1 cut(s) 252
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 3 cut(s) 371, 389, 395
SaqAI TTAA 2 cut(s) 171, 414
SatI GCNGC 4 cut(s) 55, 94, 480, 678
Sau3AI GATC 8 cut(s) 27, 31, 249, 436, 469, 490, 522, 562
Sau96I GGNCC 3 cut(s) 337, 430, 505
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 3 cut(s) 341, 342, 355
SduI GDGCHC 1 cut(s) 324
SinI GGWCC 2 cut(s) 337, 505
SmaI CCCGGG 1 cut(s) 342
SmiMI CAYNNNNRTG 3 cut(s) 371, 389, 395
SmlI CTYRAG 2 cut(s) 59, 494
SmoI CTYRAG 2 cut(s) 59, 494
Sse9I AATT 4 cut(s) 232, 514, 527, 669
SsiI CCGC 5 cut(s) 258, 309, 482, 677, 680
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 339, 340, 353
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 1 cut(s) 399
TaqI TCGA 7 cut(s) 30, 155, 248, 359, 381, 525, 539
TasI AATT 4 cut(s) 232, 514, 527, 669
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 680
Tru1I TTAA 2 cut(s) 171, 414
Tru9I TTAA 2 cut(s) 171, 414
TseI GCWGC 3 cut(s) 54, 93, 479
TspDTI ATGAA 2 cut(s) 355, 444
TspGWI ACGGA 3 cut(s) 177, 214, 669
TspMI CCCGGG 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 337, 505
VspI ATTAAT 1 cut(s) 414
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 340
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.