Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

49784653 .. 49785421

Gene Structure 769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG333800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGTCTTCGTCTTCCTCTATCAGAATGCAACTCCGGCGCCGGCAGAGTGCTGTACTCGAAGCCCGTCCGCTTCAAGCAACCCTCCACTCCGTTTCCGGCTAGCTTCTCCACATTCTTCACGTTCTCCGTTAGCAATTTGAACCCCTCCTCGATCGGCGGCGGGCTGGCTTTTATCATCTCGCCGGACGATGAGGTTGTCGGAGACTCCAGCGGGTTCTTGGGGCTCCAGAGCGTGGAGGACCCGGGTTCGGGTTCCAGGTCGAGCTTCGTGGCGGTGGACCTCGTGAATTGCTGGATCGAATTCGGCGGGTCAAGTCGGGTCTTCAACATATCCGTTTCGTATTCGAATCTCAAACCCAGAGACCCGCTCCTCTCCTTCCCTCTCGATCTTGATCAGTACGTCAACGACTTGGGTGTTTCTGGGTGTTCAGGATCTGGGTTGTGTGTTGTTATTGCTCGATCTGATCTGGGTGTTTCTGATCATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

163

Amino Acids

17.14

Weight (kDa)

4.62

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	8 - 95	1.1e-16	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	370
AciI	CCGC	7 cut(s)	70, 159, 162, 213, 275, 309, 368
AclWI	GGATC	2 cut(s)	305, 442
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	56, 401
AfiI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
AgsI	TTSAA	3 cut(s)	76, 142, 328
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	2 cut(s)	105, 267
AluI	AGCT	2 cut(s)	105, 267
Alw26I	GTCTC	2 cut(s)	198, 357
AlwI	GGATC	2 cut(s)	305, 442
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	241, 280
AsuC2I	CCSGG	2 cut(s)	245, 246
AsuII	TTCGAA	1 cut(s)	347
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	241, 280
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	5, 316
BciT130I	CCWGG	1 cut(s)	259
BclI	TGATCA	2 cut(s)	394, 481
BcnI	CCSGG	2 cut(s)	245, 246
BcoDI	GTCTC	2 cut(s)	198, 357
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	3 cut(s)	245, 246, 259
Bme18I	GGWCC	2 cut(s)	241, 280
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	241, 280
BmiI	GGNNCC	4 cut(s)	40, 227, 243, 256
BmrFI	CCNGG	3 cut(s)	245, 246, 259
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	5, 316
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
BpmI	CTGGAG	2 cut(s)	193, 212
Bpu14I	TTCGAA	1 cut(s)	347
BpuMI	CCSGG	2 cut(s)	245, 246
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 250, 251
Bse118I	RCCGGY	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
BseRI	GAGGAG	2 cut(s)	139, 362
Bsh1285I	CGRYCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	5 cut(s)	36, 42, 98, 185, 245
BslI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
BsmAI	GTCTC	2 cut(s)	198, 357
BsmI	GAATGC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	8 cut(s)	153, 297, 388, 394, 434, 461, 466, 481
BspACI	CCGC	7 cut(s)	70, 159, 162, 213, 275, 309, 368
BspLI	GGNNCC	4 cut(s)	40, 227, 243, 256
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	305, 442
BspT104I	TTCGAA	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	8 cut(s)	153, 297, 388, 394, 434, 461, 466, 481
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	4 cut(s)	43, 103, 164, 168
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	8 cut(s)	156, 300, 391, 397, 437, 464, 469, 484
BstMAI	GTCTC	2 cut(s)	198, 357
BstMBI	GATC	8 cut(s)	153, 297, 388, 394, 434, 461, 466, 481
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	243, 244, 257
BstV2I	GAAGAC	2 cut(s)	5, 316
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
Cac8I	GCNNGC	4 cut(s)	43, 103, 164, 168
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	241, 280
Cfr9I	CCCGGG	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	55, 400
CviJI	RGCY	7 cut(s)	64, 101, 105, 166, 170, 226, 267
CviKI_1	RGCY	7 cut(s)	64, 101, 105, 166, 170, 226, 267
CviQI	GTAC	2 cut(s)	55, 400
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	8 cut(s)	155, 299, 390, 396, 436, 463, 468, 483
DpnII	GATC	8 cut(s)	153, 297, 388, 394, 434, 461, 466, 481
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	241, 280
Eco88I	CYCGRG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaiI	YATR	1 cut(s)	332
FauI	CCCGC	4 cut(s)	155, 206, 302, 375
FbaI	TGATCA	2 cut(s)	394, 481
Fnu4HI	GCNGC	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	2 cut(s)	193, 212
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	5 cut(s)	36, 42, 98, 185, 245
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	206, 349
HpaII	CCGG	5 cut(s)	36, 42, 98, 185, 245
Hpy166II	GTNNAC	2 cut(s)	280, 406
Hpy188I	TCNGA	4 cut(s)	25, 203, 466, 481
Hpy188III	TCNNGA	5 cut(s)	229, 286, 386, 392, 432
Hpy8I	GTNNAC	2 cut(s)	280, 406
HpyAV	CCTTC	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	122, 402
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpySE526I	ACGT	2 cut(s)	122, 402
Hsp92I	GRCGYC	1 cut(s)	39
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Ksp22I	TGATCA	2 cut(s)	394, 481
Kzo9I	GATC	8 cut(s)	153, 297, 388, 394, 434, 461, 466, 481
LmnI	GCTCC	2 cut(s)	231, 375
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	122, 402
MalI	GATC	8 cut(s)	155, 299, 390, 396, 436, 463, 468, 483
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	8 cut(s)	153, 297, 388, 394, 434, 461, 466, 481
MboII	GAAGA	3 cut(s)	5, 109, 316
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	3 cut(s)	136, 289, 302
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	9 cut(s)	27, 94, 157, 160, 187, 232, 293, 383, 393
MroNI	GCCGGC	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	5 cut(s)	36, 42, 98, 185, 245
MspR9I	CCNGG	3 cut(s)	245, 246, 259
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	36
NaeI	GCCGGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	2 cut(s)	245, 246
NdeII	GATC	8 cut(s)	153, 297, 388, 394, 434, 461, 466, 481
NgoMIV	GCCGGC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	4 cut(s)	40, 227, 243, 256
NspV	TTCGAA	1 cut(s)	347
PctI	GAATGC	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	161
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	4 cut(s)	40, 227, 243, 256
PspPI	GGNCC	2 cut(s)	241, 280
PspPPI	RGGWCCY	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	434
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	56, 401
RsaNI	GTAC	2 cut(s)	55, 400
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	8 cut(s)	153, 297, 388, 394, 434, 461, 466, 481
Sau96I	GGNCC	2 cut(s)	241, 280
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	245, 246, 259
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	7 cut(s)	107, 125, 198, 263, 269, 285, 405
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	2 cut(s)	241, 280
SmaI	CCCGGG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	136, 289, 302
SsiI	CCGC	7 cut(s)	70, 159, 162, 213, 275, 309, 368
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	243, 244, 257
TaiI	ACGT	2 cut(s)	125, 405
TaqI	TCGA	7 cut(s)	59, 152, 263, 300, 347, 387, 460
TasI	AATT	3 cut(s)	136, 289, 302
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	349
TspGWI	ACGGA	3 cut(s)	81, 118, 325
TspMI	CCCGGG	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	241, 280
XapI	RAATTY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.