Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

12460707 .. 12461018

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCCAGTTCCAAGCTTGACCCAACACTCTCTGACACCCTCTAGATTCAAAGACATCAATAGAAACCACGCCGTATTCAATCTGAACTTCATGGTGTCAACGCATATTAGTGATCTGGGCTCTGTTGACATCAATCTTAAAAGTAACGATCTGGTGAGCTCGTGGATCGAGTACGATAGGTCTAGTGGGGTCATCAACGTCTCGGTTTCATACTCCAATCTAAAACCCAAAGACCCAATTCTATCATCCTCTCTCAATCTGGGCCAGCACGTAAGCAATTTCGTGTACGTTGGGTTTTCCGGGTCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase S1FA

Protein Analysis

104

Amino Acids

11.33

Weight (kDa)

6.9

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	15 - 103	3.3e-18	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	173
AfaI	GTAC	2 cut(s)	173, 287
AgsI	TTSAA	2 cut(s)	49, 79
AluBI	AGCT	2 cut(s)	15, 159
AluI	AGCT	2 cut(s)	15, 159
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	122, 161
BauI	CACGAG	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	42, 183
Bme1390I	CCNGG	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	205
BsmBI	CGTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	122, 161
Bsp143I	GATC	3 cut(s)	112, 148, 165
BspANI	GGCC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	5
BssMI	GATC	3 cut(s)	112, 148, 165
BssSI	CACGAG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	245
BstKTI	GATC	3 cut(s)	115, 151, 168
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	3 cut(s)	112, 148, 165
BstSCI	CCNGG	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	172, 286
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	4 cut(s)	15, 120, 159, 264
CviKI_1	RGCY	4 cut(s)	15, 120, 159, 264
CviQI	GTAC	2 cut(s)	172, 286
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	114, 150, 167
DpnII	GATC	3 cut(s)	112, 148, 165
Ecl136II	GAGCTC	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	122, 161
Eco53kI	GAGCTC	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	122, 161
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	92, 105, 211
FatI	CATG	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	305
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	2 cut(s)	122, 161
FspBI	CTAG	2 cut(s)	42, 183
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	1 cut(s)	94
HincII	GTYRAC	3 cut(s)	99, 127, 306
HindII	GTYRAC	3 cut(s)	99, 127, 306
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	4 cut(s)	99, 127, 286, 306
Hpy188I	TCNGA	2 cut(s)	33, 84
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	4 cut(s)	99, 127, 286, 306
HpyCH4IV	ACGT	3 cut(s)	198, 270, 288
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	3 cut(s)	198, 270, 288
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	112, 148, 165
LpnPI	CCDG	5 cut(s)	18, 101, 137, 245, 278
MaeI	CTAG	2 cut(s)	42, 183
MaeII	ACGT	3 cut(s)	198, 270, 288
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	114, 150, 167
MboI	GATC	3 cut(s)	112, 148, 165
MhlI	GDGCHC	2 cut(s)	122, 161
MluCI	AATT	2 cut(s)	237, 277
MnlI	CCTC	2 cut(s)	49, 259
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	301
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	3 cut(s)	112, 148, 165
NlaIII	CATG	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	45
Ppu21I	YACGTR	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	262
RsaI	GTAC	2 cut(s)	173, 287
RsaNI	GTAC	2 cut(s)	172, 286
RseI	CAYNNNNRTG	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	161
SalI	GTCGAC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	112, 148, 165
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	2 cut(s)	122, 161
SetI	ASST	6 cut(s)	17, 161, 182, 201, 273, 291
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	237, 277
SspMI	CTAG	2 cut(s)	42, 183
SstI	GAGCTC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	299
TaiI	ACGT	3 cut(s)	201, 273, 291
TaqI	TCGA	2 cut(s)	168, 305
TasI	AATT	2 cut(s)	237, 277
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	79, 198
XbaI	TCTAGA	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	2 cut(s)	42, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.