Rmu_co7968634.1_g000001

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7968634.1
OG0001606
Physical Location & Seq
Reverse (-)
1 .. 464
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7968634.1_g000001.1.cds

Sequence Viewer

Length: 440 bp
atgggtcttcgtcttcctctatcagaatgcaactccggtgccggcagagtgctgtactcgaagcccgtccgcttcaaccaaccctccactccatttccgtctagcttctccacattcttcacgttctccgtcagcaatttgaacccctcctcgatctgcgacaggctggcttttttcatctggccagacgatgaggttgttggagactccggcgggttcttggagctccaaagcgtggaggacccgggttcgggttccgggtggagcttcgtggcagtgaacctcatgaattgctggattgaattcggcgggtcgagtcgggtcttcaacatatatgtttcgtattcgaatctcaaacccagagactcgcttctctccttccttctcgatcttgatcagtacgtcaacgacttgggtgtttctgggtgtttaggatctgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

147

Amino Acids

16.01

Weight (kDa)

4.34

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 235
AciI CCGC 3 cut(s) 70, 213, 309
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 2 cut(s) 56, 401
AfiI CCNNNNNNNGG 3 cut(s) 235, 250, 251
AgsI TTSAA 4 cut(s) 76, 142, 302, 328
AluBI AGCT 3 cut(s) 105, 226, 267
AluI AGCT 3 cut(s) 105, 226, 267
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 198, 357
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 3 cut(s) 245, 246, 259
AsuII TTCGAA 1 cut(s) 347
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 184
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 5, 316
Bbv12I GWGCWC 1 cut(s) 228
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 3 cut(s) 245, 246, 259
BcoDI GTCTC 2 cut(s) 198, 357
BfaI CTAG 1 cut(s) 102
Bme1390I CCNGG 3 cut(s) 245, 246, 259
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 3 cut(s) 40, 243, 256
BmrFI CCNGG 3 cut(s) 245, 246, 259
BpiI GAAGAC 2 cut(s) 5, 316
Bpu14I TTCGAA 1 cut(s) 347
BpuMI CCSGG 3 cut(s) 245, 246, 259
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 250, 251
Bse118I RCCGGY 1 cut(s) 41
Bse8I GATNNNNATC 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 3 cut(s) 235, 250, 251
BseRI GAGGAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 5 cut(s) 36, 42, 210, 245, 258
BslI CCNNNNNNNGG 3 cut(s) 235, 250, 251
BsmAI GTCTC 2 cut(s) 198, 357
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 4 cut(s) 153, 388, 394, 434
BspACI CCGC 3 cut(s) 70, 213, 309
BspANI GGCC 1 cut(s) 184
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 40, 243, 256
BspT104I TTCGAA 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 4 cut(s) 153, 388, 394, 434
BstBI TTCGAA 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 43, 168
BstKTI GATC 4 cut(s) 156, 391, 397, 437
BstMAI GTCTC 2 cut(s) 198, 357
BstMBI GATC 4 cut(s) 153, 388, 394, 434
BstSCI CCNGG 3 cut(s) 243, 244, 257
BstV2I GAAGAC 2 cut(s) 5, 316
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 43, 168
CciI TCATGA 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 241
Cfr9I CCCGGG 1 cut(s) 244
Csp6I GTAC 2 cut(s) 55, 400
CviAII CATG 1 cut(s) 286
CviJI RGCY 7 cut(s) 64, 105, 166, 170, 184, 226, 267
CviKI_1 RGCY 7 cut(s) 64, 105, 166, 170, 184, 226, 267
CviQI GTAC 2 cut(s) 55, 400
DpnI GATC 4 cut(s) 155, 390, 396, 436
DpnII GATC 4 cut(s) 153, 388, 394, 434
EaeI YGGCCR 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 287, 332, 334, 336
FatI CATG 1 cut(s) 285
FauI CCCGC 2 cut(s) 206, 302
FbaI TGATCA 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 184
HapII CCGG 5 cut(s) 36, 42, 210, 245, 258
Hin1II CATG 1 cut(s) 289
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 4 cut(s) 206, 316, 349, 365
HpaII CCGG 5 cut(s) 36, 42, 210, 245, 258
Hpy166II GTNNAC 2 cut(s) 280, 406
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 286, 386, 392
Hpy8I GTNNAC 2 cut(s) 280, 406
HpyAV CCTTC 2 cut(s) 388, 392
HpyCH4IV ACGT 2 cut(s) 122, 402
HpyCH4V TGCA 1 cut(s) 30
HpySE526I ACGT 2 cut(s) 122, 402
Hsp92II CATG 1 cut(s) 289
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 4 cut(s) 153, 388, 394, 434
LmnI GCTCC 3 cut(s) 223, 231, 264
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 122, 402
MalI GATC 4 cut(s) 155, 390, 396, 436
MboI GATC 4 cut(s) 153, 388, 394, 434
MboII GAAGA 3 cut(s) 5, 109, 316
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 3 cut(s) 136, 289, 302
MluNI TGGCCA 1 cut(s) 184
MlyI GAGTC 3 cut(s) 200, 325, 359
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 7 cut(s) 27, 94, 157, 160, 187, 232, 293
Mox20I TGGCCA 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 41
MscI TGGCCA 1 cut(s) 184
Msp20I TGGCCA 1 cut(s) 184
MspI CCGG 5 cut(s) 36, 42, 210, 245, 258
MspR9I CCNGG 3 cut(s) 245, 246, 259
Mva1269I GAATGC 1 cut(s) 32
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 3 cut(s) 245, 246, 259
NdeII GATC 4 cut(s) 153, 388, 394, 434
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 3 cut(s) 40, 243, 256
NspV TTCGAA 1 cut(s) 347
PagI TCATGA 1 cut(s) 285
PctI GAATGC 1 cut(s) 32
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 235
PleI GAGTC 3 cut(s) 200, 324, 359
PpsI GAGTC 3 cut(s) 200, 324, 359
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 40, 243, 256
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 2 cut(s) 56, 401
RsaNI GTAC 2 cut(s) 55, 400
SacI GAGCTC 1 cut(s) 228
Sau3AI GATC 4 cut(s) 153, 388, 394, 434
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 3 cut(s) 200, 325, 359
ScrFI CCNGG 3 cut(s) 245, 246, 259
SduI GDGCHC 1 cut(s) 228
SetI ASST 7 cut(s) 107, 125, 198, 228, 269, 285, 405
SfuI TTCGAA 1 cut(s) 347
SinI GGWCC 1 cut(s) 241
SmaI CCCGGG 1 cut(s) 246
Sse9I AATT 3 cut(s) 136, 289, 302
SsiI CCGC 3 cut(s) 70, 213, 309
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 3 cut(s) 243, 244, 257
TaiI ACGT 2 cut(s) 125, 405
TaqI TCGA 5 cut(s) 59, 152, 314, 347, 387
TasI AATT 3 cut(s) 136, 289, 302
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 1 cut(s) 282
TspDTI ATGAA 2 cut(s) 166, 302
TspGWI ACGGA 2 cut(s) 87, 118
TspMI CCCGGG 1 cut(s) 244
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 302
XmaI CCCGGG 1 cut(s) 244
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.