Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000083.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

128250 .. 130757

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000083.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgcgaagaagagcagaagaaaagagacgaagtggtcagaaatctgagattaggtctcgtctctctcgatctggcaaccccaagctcctcggcgacgtccacttgaacaatggcagcgtgcatctcactcgcgaccttgccgtccccaactccggcgccggcaaagtgctgtactcgaagcccgtcctcttcaagcaaccctccactccatttccggctagcttctccacattcttcacgttctccgtcagcaatttgaacccctcctcgataggcagcgggctggcttttatcatcttaccggacgatgaggttgtcagagacgtcggcgggttcttgggggtccagagcgtagaggacccaggtttgggttccgggtcaagcttcgtgacggtggagttcgacacgcttatggacgtggagttcaaggacattaatagaaaccacgtgggcctggatctcaactccatggtttcgtcacaggtcggcgatcttggcactacagatattgatctcaagatcggggaccttgtgaattgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

180

Amino Acids

19.41

Weight (kDa)

5.9

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	33, 140
AatII	GACGTC	2 cut(s)	99, 327
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	279, 330
AclWI	GGATC	1 cut(s)	465
AcvI	CACGTG	1 cut(s)	448
AcyI	GRCGYC	3 cut(s)	96, 156, 324
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	152, 367, 368
AgsI	TTSAA	4 cut(s)	106, 193, 259, 427
AjiI	CACGTC	1 cut(s)	418
AjnI	CCWGG	2 cut(s)	361, 453
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	3 cut(s)	85, 222, 384
AluI	AGCT	3 cut(s)	85, 222, 384
Alw26I	GTCTC	4 cut(s)	19, 60, 65, 315
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	114, 276
AseI	ATTAAT	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	4 cut(s)	343, 358, 451, 526
AsuC2I	CCSGG	1 cut(s)	376
AsuNHI	GCTAGC	1 cut(s)	218
AvaII	GGWCC	3 cut(s)	343, 358, 526
BanI	GGYRCC	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	126, 288
BceAI	ACGGC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	363, 455
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	4 cut(s)	19, 60, 65, 315
BfaI	CTAG	2 cut(s)	219, 541
BfmI	CTRYAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	2 cut(s)	115, 277
BlsI	GCNGC	2 cut(s)	116, 278
Bme1390I	CCNGG	3 cut(s)	363, 376, 455
Bme18I	GGWCC	3 cut(s)	343, 358, 526
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	4 cut(s)	343, 358, 451, 526
BmiI	GGNNCC	5 cut(s)	157, 344, 360, 373, 527
BmrFI	CCNGG	3 cut(s)	363, 376, 455
BmsI	GCATC	1 cut(s)	130
BmtI	GCTAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	448
BsaBI	GATNNNNATC	1 cut(s)	510
BsaHI	GRCGYC	3 cut(s)	96, 156, 324
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	88, 361, 468
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 367, 368
Bse118I	RCCGGY	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	363, 455
BseDI	CCNNGG	3 cut(s)	88, 361, 468
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	152, 367, 368
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	77, 256
BseXI	GCAGC	2 cut(s)	126, 288
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	453
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	5 cut(s)	153, 159, 215, 302, 375
BslFI	GGGAC	2 cut(s)	128, 539
BslI	CCNNNNNNNGG	3 cut(s)	152, 367, 368
BsmAI	GTCTC	4 cut(s)	19, 60, 65, 315
BsmBI	CGTCTC	3 cut(s)	19, 65, 315
BsmFI	GGGAC	2 cut(s)	128, 539
BsnI	GGCC	1 cut(s)	453
Bso31I	GGTCTC	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	68, 457, 490, 511, 519
Bsp19I	CCATGG	1 cut(s)	468
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	2 cut(s)	279, 330
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	5 cut(s)	157, 344, 360, 373, 527
BspOI	GCTAGC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	465
BspQI	GCTCTTC	1 cut(s)	4
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	88, 361, 468
BssMI	GATC	5 cut(s)	68, 457, 490, 511, 519
BssNI	GRCGYC	3 cut(s)	96, 156, 324
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	363, 455
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	2 cut(s)	4, 194
BstACI	GRCGYC	3 cut(s)	96, 156, 324
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	5 cut(s)	119, 160, 220, 281, 285
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	468
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	5 cut(s)	71, 460, 493, 514, 522
BstMAI	GTCTC	4 cut(s)	19, 60, 65, 315
BstMBI	GATC	5 cut(s)	68, 457, 490, 511, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	2 cut(s)	363, 455
BstSCI	CCNGG	3 cut(s)	361, 374, 453
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	126, 288
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	468
BtrI	CACGTC	1 cut(s)	418
BtuMI	TCGCGA	1 cut(s)	132
Cac8I	GCNNGC	5 cut(s)	119, 160, 220, 281, 285
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	343, 358, 451, 526
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	8 cut(s)	85, 181, 218, 222, 283, 287, 384, 453
CviKI_1	RGCY	8 cut(s)	85, 181, 218, 222, 283, 287, 384, 453
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	45
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	5 cut(s)	70, 459, 492, 513, 521
DpnII	GATC	5 cut(s)	68, 457, 490, 511, 519
DrdI	GACNNNNNNGTC	2 cut(s)	33, 140
DseDI	GACNNNNNNGTC	2 cut(s)	33, 140
Eam1104I	CTCTTC	2 cut(s)	4, 194
EarI	CTCTTC	2 cut(s)	4, 194
Eco130I	CCWWGG	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	3 cut(s)	343, 358, 526
Eco72I	CACGTG	1 cut(s)	448
EcoO109I	RGGNCCY	2 cut(s)	358, 526
EcoRII	CCWGG	2 cut(s)	361, 453
EcoT14I	CCWWGG	1 cut(s)	468
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	3 cut(s)	19, 65, 315
FaeI	CATG	1 cut(s)	472
FaiI	YATR	2 cut(s)	413, 470
FaqI	GGGAC	2 cut(s)	128, 539
FatI	CATG	1 cut(s)	468
FauI	CCCGC	2 cut(s)	272, 323
Fnu4HI	GCNGC	2 cut(s)	115, 277
Fsp4HI	GCNGC	2 cut(s)	115, 277
FspBI	CTAG	2 cut(s)	219, 541
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	115, 277
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	5 cut(s)	153, 159, 215, 302, 375
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	3 cut(s)	96, 156, 324
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	1 cut(s)	382
HpaII	CCGG	5 cut(s)	153, 159, 215, 302, 375
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	39, 46, 320
Hpy188III	TCNNGA	5 cut(s)	66, 131, 346, 388, 517
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	98, 329
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	5 cut(s)	96, 239, 324, 417, 447
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	5 cut(s)	96, 239, 324, 417, 447
Hsp92I	GRCGYC	3 cut(s)	96, 156, 324
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	68, 457, 490, 511, 519
LguI	GCTCTTC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	126, 288
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	219, 541
MaeII	ACGT	5 cut(s)	96, 239, 324, 417, 447
MaeIII	GTNAC	2 cut(s)	388, 477
MalI	GATC	5 cut(s)	70, 459, 492, 513, 521
MboI	GATC	5 cut(s)	68, 457, 490, 511, 519
MboII	GAAGA	5 cut(s)	18, 21, 29, 181, 226
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	2 cut(s)	253, 535
Mly113I	GGCGCC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	98, 197, 211, 274, 277, 304, 349
MroNI	GCCGGC	1 cut(s)	158
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	5 cut(s)	153, 159, 215, 302, 375
MspR9I	CCNGG	3 cut(s)	363, 376, 455
MvaI	CCWGG	2 cut(s)	363, 455
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	495
NaeI	GCCGGC	1 cut(s)	160
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	376
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	5 cut(s)	68, 457, 490, 511, 519
NgoMIV	GCCGGC	1 cut(s)	158
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	5 cut(s)	157, 344, 360, 373, 527
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	388, 477
NruI	TCGCGA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	4
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	116, 278
PluTI	GGCGCC	1 cut(s)	159
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	448
PpuMI	RGGWCCY	2 cut(s)	358, 526
PshBI	ATTAAT	1 cut(s)	435
Psp5II	RGGWCCY	2 cut(s)	358, 526
Psp6I	CCWGG	2 cut(s)	361, 453
PspCI	CACGTG	1 cut(s)	448
PspGI	CCWGG	2 cut(s)	361, 453
PspN4I	GGNNCC	5 cut(s)	157, 344, 360, 373, 527
PspPI	GGNCC	4 cut(s)	343, 358, 451, 526
PspPPI	RGGWCCY	2 cut(s)	358, 526
PsuI	RGATCY	1 cut(s)	457
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	115, 277
Sau3AI	GATC	5 cut(s)	68, 457, 490, 511, 519
Sau96I	GGNCC	4 cut(s)	343, 358, 451, 526
ScrFI	CCNGG	3 cut(s)	363, 376, 455
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	501
SfoI	GGCGCC	1 cut(s)	157
SinI	GGWCC	3 cut(s)	343, 358, 526
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	2 cut(s)	253, 535
SsiI	CCGC	2 cut(s)	279, 330
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	219, 541
StyD4I	CCNGG	3 cut(s)	361, 374, 453
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	5 cut(s)	99, 242, 327, 420, 450
TaqI	TCGA	4 cut(s)	67, 176, 269, 402
TasI	AATT	2 cut(s)	253, 535
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	388, 477
TseI	GCWGC	2 cut(s)	114, 276
Tsp45I	GTSAC	2 cut(s)	388, 477
TspGWI	ACGGA	1 cut(s)	235
VpaK11BI	GGWCC	3 cut(s)	343, 358, 526
VspI	ATTAAT	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	2 cut(s)	219, 541
ZraI	GACGTC	2 cut(s)	97, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.