Rh3DG203400

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001606
Physical Location & Seq
Forward (+)
18586622 .. 18589526
2905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG203400.1

Sequence Viewer

Length: 768 bp
ATGTCCCAACGGATTCGCTCCGTCATCTTTACTACTGTACTCCACCTTTACCTCTGCTTTTCCAACTTCCTCATTACGTCAGCCGTAACCGAATTCGACTTCGGAACCCTCACCCTCAGCAGCCTCAAGCTCCTCGGCGACGCCCACTTGAACAATGGCAGCGTGCGTCTCACTCGCGACCTCGCCGTCCCCAACTCCGGCGCCGGCAGAGTGCTGTACTCGAAGCCCGTCCGCTTCAAGCAACCCTCCACTCCGTTTCCGGCTAGCTTCTCCACATTCTTCACGTTCTCAGTCAGCAATTTGAACCCCTCCTCGATCGGCGGCGGGCTGGCTTTTATTATCTCGCCGGACGATGAGGTTGTCGGAGACGCCGGCGGGTTCTTGGGGCTCCAGAGCTTGGAGGGCCCGGGTTCGGGTTCCGGGTCGAGCTTCGTGGCGGTGGAGTTCGACACGCTCATGGACGTGGAGTTCAAGGACATTAATAGCAACCACGTGGGCCTGGATCTCAACTCCATGGGAGCTCAAGGCAGCTACGAAGTGCTTCAATGCGAATCGGAGACGGGTGACATTGTTGCAGTGAAGAGATGTAGTCATAGTACTCAGGGGAAGAACGAGTTTTTGTCCGAGTTGTCTATTATCGGAACTCTTAGGCATCGAAATCTTGACAGTGTTTCCGATTGCAATGGCATGATCACCATCTCCACCTCCTCCTCCGAAAACAGCTTCAACGGTCTCGGTGACGATCATATCGCTTTCCCATTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

255

Amino Acids

27.21

Weight (kDa)

4.83

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 31 - 179 1.2e-33 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 397
AccII CGCG 1 cut(s) 177
AciI CCGC 5 cut(s) 232, 321, 324, 375, 437
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 1 cut(s) 92
AcvI CACGTG 1 cut(s) 493
AcyI GRCGYC 3 cut(s) 141, 201, 369
AfaI GTAC 3 cut(s) 39, 218, 598
AfiI CCNNNNNNNGG 4 cut(s) 197, 397, 412, 413
AgsI TTSAA 6 cut(s) 151, 238, 304, 472, 545, 727
AjiI CACGTC 1 cut(s) 463
AjnI CCWGG 1 cut(s) 498
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
AluBI AGCT 7 cut(s) 130, 267, 396, 429, 521, 531, 723
AluI AGCT 7 cut(s) 130, 267, 396, 429, 521, 531, 723
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 4 cut(s) 173, 360, 551, 737
AlwI GGATC 1 cut(s) 510
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 2 cut(s) 403, 496
ApaI GGGCCC 1 cut(s) 407
ApeKI GCWGC 3 cut(s) 120, 159, 528
ApoI RAATTY 1 cut(s) 92
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 403, 404, 496
AsuC2I CCSGG 3 cut(s) 407, 408, 421
AsuHPI GGTGA 4 cut(s) 103, 575, 685, 749
AsuNHI GCTAGC 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 407
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 3 cut(s) 390, 407, 523
BbrPI CACGTG 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 523
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 132, 171, 540
BccI CCATC 1 cut(s) 704
BceAI ACGGC 2 cut(s) 68, 170
BciT130I CCWGG 1 cut(s) 500
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 3 cut(s) 407, 408, 421
BcoDI GTCTC 4 cut(s) 173, 360, 551, 737
BfaI CTAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 4 cut(s) 121, 160, 322, 529
BlsI GCNGC 4 cut(s) 122, 161, 323, 530
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 4 cut(s) 407, 408, 421, 500
BmeT110I CYCGRG 1 cut(s) 406
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 3 cut(s) 403, 404, 496
BmiI GGNNCC 5 cut(s) 106, 202, 389, 405, 418
BmrFI CCNGG 4 cut(s) 407, 408, 421, 500
BmsI GCATC 1 cut(s) 661
BmtI GCTAGC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 110, 507
BpuMI CCSGG 3 cut(s) 407, 408, 421
BsaAI YACGTR 1 cut(s) 493
BsaBI GATNNNNATC 1 cut(s) 695
BsaHI GRCGYC 3 cut(s) 141, 201, 369
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 133, 406, 513
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 397, 412, 413
Bse118I RCCGGY 2 cut(s) 203, 371
Bse3DI GCAATG 1 cut(s) 688
Bse8I GATNNNNATC 1 cut(s) 695
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 3 cut(s) 133, 406, 513
BseJI GATNNNNATC 1 cut(s) 695
BseLI CCNNNNNNNGG 4 cut(s) 197, 397, 412, 413
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 3 cut(s) 130, 303, 614
BseRI GAGGAG 4 cut(s) 122, 301, 697, 700
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 3 cut(s) 132, 171, 540
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 405, 498
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 7 cut(s) 198, 204, 260, 347, 372, 407, 420
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 4 cut(s) 197, 397, 412, 413
BsmAI GTCTC 4 cut(s) 173, 360, 551, 737
BsmBI CGTCTC 3 cut(s) 173, 360, 551
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 405, 498
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 1 cut(s) 406
Bsp120I GGGCCC 1 cut(s) 403
Bsp1286I GDGCHC 3 cut(s) 390, 407, 523
Bsp143I GATC 4 cut(s) 315, 502, 690, 742
Bsp19I CCATGG 1 cut(s) 513
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 5 cut(s) 232, 321, 324, 375, 437
BspANI GGCC 2 cut(s) 405, 498
BspCNI CTCAG 3 cut(s) 129, 302, 613
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 5 cut(s) 106, 202, 389, 405, 418
BspOI GCTAGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 688
BsrFI RCCGGY 2 cut(s) 203, 371
BssAI RCCGGY 2 cut(s) 203, 371
BssECI CCNNGG 3 cut(s) 133, 406, 513
BssMI GATC 4 cut(s) 315, 502, 690, 742
BssNI GRCGYC 3 cut(s) 141, 201, 369
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 3 cut(s) 37, 668, 731
Bst6I CTCTTC 1 cut(s) 575
BstACI GRCGYC 3 cut(s) 141, 201, 369
BstBAI YACGTR 1 cut(s) 493
BstC8I GCNNGC 6 cut(s) 164, 205, 265, 326, 330, 373
BstDEI CTNAG 4 cut(s) 116, 289, 600, 647
BstDSI CCRYGG 1 cut(s) 513
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 4 cut(s) 318, 505, 693, 745
BstMAI GTCTC 4 cut(s) 173, 360, 551, 737
BstMBI GATC 4 cut(s) 315, 502, 690, 742
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNI CCWGG 1 cut(s) 500
BstSCI CCNGG 4 cut(s) 405, 406, 419, 498
BstSLI GKGCMC 1 cut(s) 407
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 132, 171, 540
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 2 cut(s) 405, 498
BtgI CCRYGG 1 cut(s) 513
BtrI CACGTC 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 582, 673
BtuMI TCGCGA 1 cut(s) 177
Cac8I GCNNGC 6 cut(s) 164, 205, 265, 326, 330, 373
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 2 cut(s) 203, 371
Cfr13I GGNCC 3 cut(s) 403, 404, 496
Cfr9I CCCGGG 1 cut(s) 406
CseI GACGC 3 cut(s) 149, 155, 377
Csp6I GTAC 3 cut(s) 38, 217, 597
CviAII CATG 3 cut(s) 457, 514, 688
CviQI GTAC 3 cut(s) 38, 217, 597
DdeI CTNAG 4 cut(s) 116, 289, 600, 647
DinI GGCGCC 1 cut(s) 202
DpnI GATC 4 cut(s) 317, 504, 692, 744
DpnII GATC 4 cut(s) 315, 502, 690, 742
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
Ecl136II GAGCTC 1 cut(s) 521
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 3 cut(s) 390, 407, 523
Eco31I GGTCTC 1 cut(s) 737
Eco53kI GAGCTC 1 cut(s) 521
Eco72I CACGTG 1 cut(s) 493
Eco88I CYCGRG 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 498
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 3 cut(s) 390, 407, 523
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 513
Esp3I CGTCTC 3 cut(s) 173, 360, 551
FaeI CATG 3 cut(s) 460, 517, 691
FaiI YATR 5 cut(s) 458, 515, 594, 689, 747
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 456, 513, 687
FauI CCCGC 2 cut(s) 317, 368
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 121, 160, 322, 529
FriOI GRGCYC 3 cut(s) 390, 407, 523
Fsp4HI GCNGC 4 cut(s) 121, 160, 322, 529
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 202
GluI GCNGC 4 cut(s) 121, 160, 322, 529
GsuI CTGGAG 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 2 cut(s) 405, 498
HapII CCGG 7 cut(s) 198, 204, 260, 347, 372, 407, 420
HgaI GACGC 3 cut(s) 149, 155, 377
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 3 cut(s) 141, 201, 369
Hin1II CATG 3 cut(s) 460, 517, 691
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 2 cut(s) 13, 551
HpaII CCGG 7 cut(s) 198, 204, 260, 347, 372, 407, 420
HphI GGTGA 4 cut(s) 103, 575, 685, 749
Hpy188I TCNGA 7 cut(s) 104, 365, 556, 625, 641, 676, 715
Hpy188III TCNNGA 3 cut(s) 176, 391, 662
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 3 cut(s) 37, 668, 731
HpyCH4IV ACGT 4 cut(s) 77, 284, 462, 492
HpyCH4V TGCA 2 cut(s) 575, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 4 cut(s) 116, 289, 600, 647
HpySE526I ACGT 4 cut(s) 77, 284, 462, 492
Hsp92I GRCGYC 3 cut(s) 141, 201, 369
Hsp92II CATG 3 cut(s) 460, 517, 691
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
KroI GCCGGC 2 cut(s) 203, 371
KroNI GCCGGC 2 cut(s) 205, 373
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 4 cut(s) 315, 502, 690, 742
LmnI GCTCC 4 cut(s) 23, 135, 393, 518
Lsp1109I GCAGC 3 cut(s) 132, 171, 540
LweI GCATC 1 cut(s) 661
MaeI CTAG 1 cut(s) 264
MaeII ACGT 4 cut(s) 77, 284, 462, 492
MaeIII GTNAC 3 cut(s) 85, 563, 737
MalI GATC 4 cut(s) 317, 504, 692, 744
MboI GATC 4 cut(s) 315, 502, 690, 742
MboII GAAGA 3 cut(s) 271, 592, 619
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 3 cut(s) 390, 407, 523
MluCI AATT 2 cut(s) 92, 298
Mly113I GGCGCC 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 87, 343
MreI CGCCGGCG 1 cut(s) 371
MroNI GCCGGC 2 cut(s) 203, 371
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 2 cut(s) 480, 766
MslI CAYNNNNRTG 2 cut(s) 455, 461
MspI CCGG 7 cut(s) 198, 204, 260, 347, 372, 407, 420
MspR9I CCNGG 4 cut(s) 407, 408, 421, 500
MvaI CCWGG 1 cut(s) 500
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 402
NaeI GCCGGC 2 cut(s) 205, 373
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 3 cut(s) 407, 408, 421
NcoI CCATGG 1 cut(s) 513
NdeII GATC 4 cut(s) 315, 502, 690, 742
NgoMIV GCCGGC 2 cut(s) 203, 371
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 3 cut(s) 460, 517, 691
NlaIV GGNNCC 5 cut(s) 106, 202, 389, 405, 418
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 2 cut(s) 563, 737
NruI TCGCGA 1 cut(s) 177
PdiI GCCGGC 2 cut(s) 205, 373
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 13, 551
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 4 cut(s) 122, 161, 323, 530
Ple19I CGATCG 1 cut(s) 318
PluTI GGCGCC 1 cut(s) 204
PmaCI CACGTG 1 cut(s) 493
PmlI CACGTG 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 480
Psp124BI GAGCTC 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 498
PspCI CACGTG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 5 cut(s) 106, 202, 389, 405, 418
PspOMI GGGCCC 1 cut(s) 403
PspPI GGNCC 3 cut(s) 403, 404, 496
PsuI RGATCY 1 cut(s) 502
PvuI CGATCG 1 cut(s) 318
RruI TCGCGA 1 cut(s) 177
RsaI GTAC 3 cut(s) 39, 218, 598
RsaNI GTAC 3 cut(s) 38, 217, 597
RseI CAYNNNNRTG 2 cut(s) 455, 461
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 2 cut(s) 480, 766
SatI GCNGC 4 cut(s) 121, 160, 322, 529
Sau3AI GATC 4 cut(s) 315, 502, 690, 742
Sau96I GGNCC 3 cut(s) 403, 404, 496
ScaI AGTACT 1 cut(s) 598
ScrFI CCNGG 4 cut(s) 407, 408, 421, 500
SduI GDGCHC 3 cut(s) 390, 407, 523
SfaNI GCATC 1 cut(s) 661
SfoI GGCGCC 1 cut(s) 202
SgrAI CRCCGGYG 1 cut(s) 371
SmaI CCCGGG 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 455, 461
SmlI CTYRAG 2 cut(s) 125, 522
SmoI CTYRAG 2 cut(s) 125, 522
Sse9I AATT 2 cut(s) 92, 298
SsiI CCGC 5 cut(s) 232, 321, 324, 375, 437
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 4 cut(s) 405, 406, 419, 498
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 37, 668, 731
TaiI ACGT 4 cut(s) 80, 287, 465, 495
TaqI TCGA 6 cut(s) 96, 221, 314, 425, 447, 655
TasI AATT 2 cut(s) 92, 298
TatI WGTACW 3 cut(s) 37, 216, 596
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 2 cut(s) 13, 551
Tru1I TTAA 2 cut(s) 480, 766
Tru9I TTAA 2 cut(s) 480, 766
TscAI CASTG 2 cut(s) 582, 673
TseFI GTSAC 2 cut(s) 563, 737
TseI GCWGC 3 cut(s) 120, 159, 528
Tsp45I GTSAC 2 cut(s) 563, 737
TspGWI ACGGA 3 cut(s) 10, 25, 243
TspMI CCCGGG 1 cut(s) 406
TspRI CASTG 2 cut(s) 582, 673
Van91I CCANNNNNTGG 1 cut(s) 397
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XmaI CCCGGG 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.