Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026176.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

314 .. 715

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026176.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgggtcttcgtcttcccctatcagaatgcaactccggcgccggcagagtgctgtactcgaagcccgtccacttcaagcaaccctccactccgtttccggctagcttctccacattcttcacgttctctgtcagcaatttgaacccttcctcgatctgtggcgggctggcttttatcatttggccagacgatgaggttgtcgaagacgccggcgggttcttggggctccaaagcttggaggacccgggttcgggttccgggtcaagcttcgtggcggtgaacctcgtgaattactggatcgaattcggcgggtcgagtcgagtcttcaacatatctgtttcgtattcgaatctcaaacccggagactcgctcctctccttctctctcgatcttgatcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

133

Amino Acids

14.2

Weight (kDa)

4.39

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	235
AciI	CCGC	4 cut(s)	162, 213, 275, 309
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	39, 207
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
AgsI	TTSAA	3 cut(s)	76, 142, 328
AluBI	AGCT	3 cut(s)	105, 234, 267
AluI	AGCT	3 cut(s)	105, 234, 267
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	4 cut(s)	245, 246, 259, 360
AsuHPI	GGTGA	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	347
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	3 cut(s)	5, 210, 316
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	4 cut(s)	245, 246, 259, 360
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	42
Bme1390I	CCNGG	4 cut(s)	245, 246, 259, 360
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	4 cut(s)	40, 227, 243, 256
BmrFI	CCNGG	4 cut(s)	245, 246, 259, 360
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	3 cut(s)	5, 210, 316
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
Bpu14I	TTCGAA	1 cut(s)	347
BpuMI	CCSGG	4 cut(s)	245, 246, 259, 360
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	2 cut(s)	39, 207
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 250, 251
Bse118I	RCCGGY	2 cut(s)	41, 209
Bse1I	ACTGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	7 cut(s)	36, 42, 98, 210, 245, 258, 360
BslI	CCNNNNNNNGG	3 cut(s)	235, 250, 251
BsmAI	GTCTC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	153, 297, 388, 394
BspACI	CCGC	4 cut(s)	162, 213, 275, 309
BspANI	GGCC	1 cut(s)	184
BspLI	GGNNCC	4 cut(s)	40, 227, 243, 256
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	2 cut(s)	41, 209
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	2 cut(s)	41, 209
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	153, 297, 388, 394
BssNI	GRCGYC	2 cut(s)	39, 207
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
BstACI	GRCGYC	2 cut(s)	39, 207
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 211
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	156, 300, 391, 397
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	4 cut(s)	153, 297, 388, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstSCI	CCNGG	4 cut(s)	243, 244, 257, 358
BstV2I	GAAGAC	3 cut(s)	5, 210, 316
BsuRI	GGCC	1 cut(s)	184
Cac8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 211
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	41, 209
Cfr13I	GGNCC	1 cut(s)	241
Cfr9I	CCCGGG	1 cut(s)	244
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviJI	RGCY	9 cut(s)	64, 101, 105, 166, 170, 184, 226, 234, 267
CviKI_1	RGCY	9 cut(s)	64, 101, 105, 166, 170, 184, 226, 234, 267
CviQI	GTAC	1 cut(s)	55
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	4 cut(s)	155, 299, 390, 396
DpnII	GATC	4 cut(s)	153, 297, 388, 394
EaeI	YGGCCR	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaiI	YATR	1 cut(s)	332
FauI	CCCGC	3 cut(s)	155, 206, 302
FbaI	TGATCA	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	7 cut(s)	36, 42, 98, 210, 245, 258, 360
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 207
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	2 cut(s)	232, 265
HinfI	GANTC	4 cut(s)	316, 321, 349, 365
HpaII	CCGG	7 cut(s)	36, 42, 98, 210, 245, 258, 360
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	70, 280
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	286, 386, 392
Hpy8I	GTNNAC	2 cut(s)	70, 280
HpyAV	CCTTC	2 cut(s)	156, 388
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	2 cut(s)	39, 207
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	2 cut(s)	41, 209
KroNI	GCCGGC	2 cut(s)	43, 211
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	153, 297, 388, 394
LmnI	GCTCC	2 cut(s)	231, 375
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	122
MalI	GATC	4 cut(s)	155, 299, 390, 396
MboI	GATC	4 cut(s)	153, 297, 388, 394
MboII	GAAGA	4 cut(s)	5, 109, 215, 316
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	3 cut(s)	136, 289, 302
MluNI	TGGCCA	1 cut(s)	184
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	325, 330, 359
MnlI	CCTC	6 cut(s)	94, 160, 187, 232, 293, 383
Mox20I	TGGCCA	1 cut(s)	184
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	2 cut(s)	41, 209
MscI	TGGCCA	1 cut(s)	184
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	7 cut(s)	36, 42, 98, 210, 245, 258, 360
MspR9I	CCNGG	4 cut(s)	245, 246, 259, 360
Mva1269I	GAATGC	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	36
NaeI	GCCGGC	2 cut(s)	43, 211
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	4 cut(s)	245, 246, 259, 360
NdeII	GATC	4 cut(s)	153, 297, 388, 394
NgoMIV	GCCGGC	2 cut(s)	41, 209
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	4 cut(s)	40, 227, 243, 256
NspV	TTCGAA	1 cut(s)	347
PctI	GAATGC	1 cut(s)	32
PdiI	GCCGGC	2 cut(s)	43, 211
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	235
PleI	GAGTC	3 cut(s)	324, 329, 359
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	324, 329, 359
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
PspN4I	GGNNCC	4 cut(s)	40, 227, 243, 256
PspPI	GGNCC	1 cut(s)	241
PspPPI	RGGWCCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
Sau3AI	GATC	4 cut(s)	153, 297, 388, 394
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	3 cut(s)	325, 330, 359
ScrFI	CCNGG	4 cut(s)	245, 246, 259, 360
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	6 cut(s)	107, 125, 198, 236, 269, 285
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	347
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	241
SmaI	CCCGGG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	136, 289, 302
SsiI	CCGC	4 cut(s)	162, 213, 275, 309
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	4 cut(s)	243, 244, 257, 358
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	8 cut(s)	59, 152, 201, 300, 314, 319, 347, 387
TasI	AATT	3 cut(s)	136, 289, 302
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	349
TspGWI	ACGGA	1 cut(s)	81
TspMI	CCCGGG	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	302
XmaI	CCCGGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.