Rmu_sc0009698.1_g000002

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009698.1
OG0001606
Physical Location & Seq
Reverse (-)
837 .. 1554
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009698.1_g000002.1.cds

Sequence Viewer

Length: 621 bp
atgatcaatattaagagcatctccaacaacttccttataatttctttatggattaaatacttgttactcctcaaacttttgcctgaaaaacagtttagtctttcacctttcaaattaaactggataatcgatcttgtcctccttaccctcagcagcctcaagctcctcggcgacgcccacttgaacaatggcagcgtgcgtctcactcgcgaccttgccatccccaactccggcgccggcagagtgctgtacttgaagcccgtccgcttcaagcaaccctccactccgtttccagctagcttctccacattcttcacgttctccgtcagcaatttgaacccctcctcgatcggtggcggactggcttttatcatcttactggacgatgaggttgtaagagacgtcggcaggttcttggggctccagagcgtggaggacccaggttcgggttccgggtcgaccttcgtgacggtggagttcgacacgcttatggacgtggagttcaaggacattaatagcaaccacgtgggcctggatctcaactccatggtttcttcacaggtcgacgatcttggcattgcggatattgatctcaagatcggggacctcgtgaattgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

206

Amino Acids

22.55

Weight (kDa)

4.93

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AatII GACGTC 1 cut(s) 405
Acc36I ACCTGC 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 430
AccI GTMKAC 2 cut(s) 458, 564
AccII CGCG 1 cut(s) 210
AciI CCGC 3 cut(s) 265, 357, 581
AclWI GGATC 1 cut(s) 543
AcvI CACGTG 1 cut(s) 526
AcyI GRCGYC 3 cut(s) 174, 234, 402
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 4 cut(s) 230, 430, 445, 446
AgsI TTSAA 6 cut(s) 112, 184, 256, 271, 337, 505
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 2 cut(s) 439, 531
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
AluBI AGCT 3 cut(s) 163, 296, 300
AluI AGCT 3 cut(s) 163, 296, 300
Alw26I GTCTC 2 cut(s) 206, 393
AlwI GGATC 1 cut(s) 543
AoxI GGCC 1 cut(s) 529
ApeKI GCWGC 2 cut(s) 153, 192
AseI ATTAAT 1 cut(s) 513
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 3 cut(s) 436, 529, 604
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 2 cut(s) 436, 604
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 423
BauI CACGAG 1 cut(s) 608
BbrPI CACGTG 1 cut(s) 526
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 165, 204
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 441, 533
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 206, 393
BfaI CTAG 2 cut(s) 297, 619
BfoI RGCGCY 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 399
BisI GCNGC 2 cut(s) 154, 193
BlsI GCNGC 2 cut(s) 155, 194
Bme1390I CCNGG 3 cut(s) 441, 454, 533
Bme18I GGWCC 2 cut(s) 436, 604
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 3 cut(s) 436, 529, 604
BmiI GGNNCC 5 cut(s) 235, 422, 438, 451, 605
BmrFI CCNGG 3 cut(s) 441, 454, 533
BmsI GCATC 1 cut(s) 27
BmtI GCTAGC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 143, 578
BpuMI CCSGG 1 cut(s) 454
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 3 cut(s) 174, 234, 402
BsaJI CCNNGG 3 cut(s) 166, 439, 546
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 430, 445, 446
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 3 cut(s) 125, 366, 384
Bse3DI GCAATG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 2 cut(s) 441, 533
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 166, 439, 546
BseGI GGATG 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 230, 430, 445, 446
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 3 cut(s) 125, 366, 384
BseRI GAGGAG 3 cut(s) 59, 155, 334
BseXI GCAGC 2 cut(s) 165, 204
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 1 cut(s) 531
BshNI GGYRCC 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 351
BsiSI CCGG 3 cut(s) 231, 237, 453
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 4 cut(s) 230, 430, 445, 446
BsmAI GTCTC 2 cut(s) 206, 393
BsmBI CGTCTC 2 cut(s) 206, 393
BsmFI GGGAC 1 cut(s) 617
BsnI GGCC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 7 cut(s) 3, 130, 348, 535, 568, 589, 597
Bsp19I CCATGG 1 cut(s) 546
Bsp68I TCGCGA 1 cut(s) 210
BspACI CCGC 3 cut(s) 265, 357, 581
BspANI GGCC 1 cut(s) 531
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 5 cut(s) 235, 422, 438, 451, 605
BspMI ACCTGC 1 cut(s) 399
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 543
BspT107I GGYRCC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 576
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 3 cut(s) 125, 366, 384
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 3 cut(s) 166, 439, 546
BssMI GATC 7 cut(s) 3, 130, 348, 535, 568, 589, 597
BssNI GRCGYC 3 cut(s) 174, 234, 402
BssSI CACGAG 1 cut(s) 608
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 608
Bst2UI CCWGG 2 cut(s) 441, 533
Bst4CI ACNGT 2 cut(s) 93, 472
BstACI GRCGYC 3 cut(s) 174, 234, 402
BstBAI YACGTR 1 cut(s) 526
BstC8I GCNNGC 3 cut(s) 197, 238, 298
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 7 cut(s) 6, 133, 351, 538, 571, 592, 600
BstMAI GTCTC 2 cut(s) 206, 393
BstMBI GATC 7 cut(s) 3, 130, 348, 535, 568, 589, 597
BstMCI CGRYCG 1 cut(s) 351
BstNI CCWGG 2 cut(s) 441, 533
BstSCI CCNGG 3 cut(s) 439, 452, 531
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 165, 204
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 531
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 546
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 1 cut(s) 219
BtuMI TCGCGA 1 cut(s) 210
BveI ACCTGC 1 cut(s) 399
Cac8I GCNNGC 3 cut(s) 197, 238, 298
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 436, 529, 604
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 2 cut(s) 182, 188
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 547
CviJI RGCY 8 cut(s) 156, 163, 259, 296, 300, 365, 421, 531
CviKI_1 RGCY 8 cut(s) 156, 163, 259, 296, 300, 365, 421, 531
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 149
DinI GGCGCC 1 cut(s) 235
DpnI GATC 7 cut(s) 5, 132, 350, 537, 570, 591, 599
DpnII GATC 7 cut(s) 3, 130, 348, 535, 568, 589, 597
EciI GGCGGA 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 436, 604
Eco72I CACGTG 1 cut(s) 526
EcoO109I RGGNCCY 2 cut(s) 436, 604
EcoRII CCWGG 2 cut(s) 439, 531
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 423
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 2 cut(s) 206, 393
FaeI CATG 1 cut(s) 550
FaiI YATR 4 cut(s) 38, 49, 491, 548
FaqI GGGAC 1 cut(s) 617
FatI CATG 1 cut(s) 546
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 458, 564
Fnu4HI GCNGC 2 cut(s) 154, 193
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 2 cut(s) 154, 193
FspBI CTAG 2 cut(s) 297, 619
GlaI GCGC 1 cut(s) 235
GluI GCNGC 2 cut(s) 154, 193
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 1 cut(s) 531
HapII CCGG 3 cut(s) 231, 237, 453
HgaI GACGC 2 cut(s) 182, 188
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 3 cut(s) 174, 234, 402
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 2 cut(s) 459, 565
HindII GTYRAC 2 cut(s) 459, 565
HpaII CCGG 3 cut(s) 231, 237, 453
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 459, 565
Hpy188III TCNNGA 5 cut(s) 209, 424, 466, 595, 610
Hpy8I GTNNAC 2 cut(s) 459, 565
Hpy99I CGWCG 3 cut(s) 176, 407, 569
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 2 cut(s) 93, 472
HpyCH4IV ACGT 4 cut(s) 317, 402, 495, 525
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 4 cut(s) 317, 402, 495, 525
Hsp92I GRCGYC 3 cut(s) 174, 234, 402
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 1 cut(s) 234
KasI GGCGCC 1 cut(s) 233
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 7 cut(s) 3, 130, 348, 535, 568, 589, 597
LmnI GCTCC 2 cut(s) 168, 426
Lsp1109I GCAGC 2 cut(s) 165, 204
LweI GCATC 1 cut(s) 27
MaeI CTAG 2 cut(s) 297, 619
MaeII ACGT 4 cut(s) 317, 402, 495, 525
MaeIII GTNAC 2 cut(s) 63, 466
MalI GATC 7 cut(s) 5, 132, 350, 537, 570, 591, 599
MboI GATC 7 cut(s) 3, 130, 348, 535, 568, 589, 597
MboII GAAGA 2 cut(s) 304, 546
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 4 cut(s) 39, 113, 331, 613
Mly113I GGCGCC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 48
MroNI GCCGGC 1 cut(s) 236
MseI TTAA 4 cut(s) 12, 54, 116, 513
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 3 cut(s) 231, 237, 453
MspR9I CCNGG 3 cut(s) 441, 454, 533
MvaI CCWGG 2 cut(s) 441, 533
MvnI CGCG 1 cut(s) 210
NaeI GCCGGC 1 cut(s) 238
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 546
NdeII GATC 7 cut(s) 3, 130, 348, 535, 568, 589, 597
NgoMIV GCCGGC 1 cut(s) 236
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 5 cut(s) 235, 422, 438, 451, 605
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 466
NruI TCGCGA 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PdiI GCCGGC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 430
PkrI GCNGC 2 cut(s) 155, 194
Ple19I CGATCG 1 cut(s) 351
PluTI GGCGCC 1 cut(s) 237
PmaCI CACGTG 1 cut(s) 526
PmlI CACGTG 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 526
PpuMI RGGWCCY 2 cut(s) 436, 604
PshBI ATTAAT 1 cut(s) 513
PsiI TTATAA 1 cut(s) 38
Psp5II RGGWCCY 2 cut(s) 436, 604
Psp6I CCWGG 2 cut(s) 439, 531
PspCI CACGTG 1 cut(s) 526
PspGI CCWGG 2 cut(s) 439, 531
PspN4I GGNNCC 5 cut(s) 235, 422, 438, 451, 605
PspPI GGNCC 3 cut(s) 436, 529, 604
PspPPI RGGWCCY 2 cut(s) 436, 604
PsuI RGATCY 1 cut(s) 535
PvuI CGATCG 1 cut(s) 351
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 488
SalI GTCGAC 2 cut(s) 457, 563
SaqAI TTAA 4 cut(s) 12, 54, 116, 513
SatI GCNGC 2 cut(s) 154, 193
Sau3AI GATC 7 cut(s) 3, 130, 348, 535, 568, 589, 597
Sau96I GGNCC 3 cut(s) 436, 529, 604
ScrFI CCNGG 3 cut(s) 441, 454, 533
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 235
SinI GGWCC 2 cut(s) 436, 604
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 2 cut(s) 158, 593
SmoI CTYRAG 2 cut(s) 158, 593
Sse9I AATT 4 cut(s) 39, 113, 331, 613
SsiI CCGC 3 cut(s) 265, 357, 581
SspDI GGCGCC 1 cut(s) 233
SspI AATATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 297, 619
StyD4I CCNGG 3 cut(s) 439, 452, 531
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 2 cut(s) 93, 472
TaiI ACGT 4 cut(s) 320, 405, 498, 528
TaqI TCGA 5 cut(s) 129, 347, 458, 480, 564
TasI AATT 4 cut(s) 39, 113, 331, 613
TatI WGTACW 1 cut(s) 249
Tru1I TTAA 4 cut(s) 12, 54, 116, 513
Tru9I TTAA 4 cut(s) 12, 54, 116, 513
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 2 cut(s) 153, 192
Tsp45I GTSAC 1 cut(s) 466
TspGWI ACGGA 2 cut(s) 276, 313
Van91I CCANNNNNTGG 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 436, 604
VspI ATTAAT 1 cut(s) 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmiI GTMKAC 2 cut(s) 458, 564
XspI CTAG 2 cut(s) 297, 619
ZraI GACGTC 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.