Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002674.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Reverse (-)

2470 .. 3072

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgggtcttcgtcttcctctatcaaaatgcaactccggcgccggcagagtgctgtactcaaagcccgtccgcttcaagcaaccctccactccgtttccggctagcttctccacattcttcatgttctccgtcagcaatttgaacccctcctcgatcggcggcaggctggcttttgtcatctcaccgaacgatgaggttgtcggagacgccggcgggttcttggggctccagagcgtggaggactcgggttcgggttcttggtcgagcttcgtggcggtggacctcgtgaattgctggatcgaattaggcgggtcttcaacatatcggtttcgtattcgaatctcaaacccagagacccgttcttctccttccctctcggtcttgatcagaggaggagaggtggctgagcttagtggggatgatgacggaggtggagatggaattgtggcggcggagcttccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

154

Amino Acids

16.14

Weight (kDa)

4.87

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	235
AciI	CCGC	7 cut(s)	70, 159, 213, 275, 309, 449, 452
AclWI	GGATC	1 cut(s)	305
AcyI	GRCGYC	2 cut(s)	39, 207
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	76, 142, 318
AluBI	AGCT	4 cut(s)	105, 267, 409, 457
AluI	AGCT	4 cut(s)	105, 267, 409, 457
Alw26I	GTCTC	2 cut(s)	198, 347
AlwI	GGATC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	174
AsuII	TTCGAA	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	5, 306
BccI	CCATC	1 cut(s)	431
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	198, 347
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	160, 450
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	2 cut(s)	161, 451
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	40, 227
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	5, 306
BpmI	CTGGAG	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	337
BsaHI	GRCGYC	2 cut(s)	39, 207
BsaI	GGTCTC	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	2 cut(s)	41, 209
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	3 cut(s)	139, 405, 408
Bsh1285I	CGRYCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	4 cut(s)	36, 42, 98, 210
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	198, 347
BsmBI	CGTCTC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	153, 297, 384
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	7 cut(s)	70, 159, 213, 275, 309, 449, 452
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	40, 227
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	347
BsrFI	RCCGGY	2 cut(s)	41, 209
BssAI	RCCGGY	2 cut(s)	41, 209
BssMI	GATC	3 cut(s)	153, 297, 384
BssNI	GRCGYC	2 cut(s)	39, 207
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
BstACI	GRCGYC	2 cut(s)	39, 207
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 211
BstDEI	CTNAG	2 cut(s)	405, 410
BstF5I	GGATG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	156, 300, 387
BstMAI	GTCTC	2 cut(s)	198, 347
BstMBI	GATC	3 cut(s)	153, 297, 384
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstV2I	GAAGAC	2 cut(s)	5, 306
BtsCI	GGATG	1 cut(s)	424
Cac8I	GCNNGC	5 cut(s)	43, 103, 164, 168, 211
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	41, 209
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	121, 462
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	405, 410
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	3 cut(s)	155, 299, 386
DpnII	GATC	3 cut(s)	153, 297, 384
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	2 cut(s)	124, 465
FaiI	YATR	3 cut(s)	122, 322, 463
FatI	CATG	2 cut(s)	120, 461
FauI	CCCGC	2 cut(s)	206, 302
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	160, 450
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	160, 450
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	160, 450
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	4 cut(s)	36, 42, 98, 210
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 207
Hin1II	CATG	2 cut(s)	124, 465
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	242, 339
HpaII	CCGG	4 cut(s)	36, 42, 98, 210
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	203, 389
Hpy188III	TCNNGA	3 cut(s)	229, 286, 382
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	378
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	2 cut(s)	405, 410
Hsp92I	GRCGYC	2 cut(s)	39, 207
Hsp92II	CATG	2 cut(s)	124, 465
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	2 cut(s)	41, 209
KroNI	GCCGGC	2 cut(s)	43, 211
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	3 cut(s)	153, 297, 384
LmnI	GCTCC	2 cut(s)	231, 454
LpnPI	CCDG	9 cut(s)	49, 55, 111, 148, 152, 223, 242, 280, 363
MaeI	CTAG	1 cut(s)	102
MalI	GATC	3 cut(s)	155, 299, 386
MboI	GATC	3 cut(s)	153, 297, 384
MboII	GAAGA	4 cut(s)	5, 109, 306, 354
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	4 cut(s)	136, 289, 302, 441
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	181
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	2 cut(s)	41, 209
MspI	CCGG	4 cut(s)	36, 42, 98, 210
MwoI	GCNNNNNNNGC	1 cut(s)	36
NaeI	GCCGGC	2 cut(s)	43, 211
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	3 cut(s)	153, 297, 384
NgoMIV	GCCGGC	2 cut(s)	41, 209
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	124, 465
NlaIV	GGNNCC	2 cut(s)	40, 227
NspV	TTCGAA	1 cut(s)	337
PdiI	GCCGGC	2 cut(s)	43, 211
PfeI	GAWTC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	161, 451
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	1 cut(s)	236
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	40, 227
PspPI	GGNCC	1 cut(s)	280
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SatI	GCNGC	2 cut(s)	160, 450
Sau3AI	GATC	3 cut(s)	153, 297, 384
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	8 cut(s)	107, 198, 269, 285, 402, 411, 433, 459
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	337
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	4 cut(s)	136, 289, 302, 441
SsiI	CCGC	7 cut(s)	70, 159, 213, 275, 309, 449, 452
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	102
TaqI	TCGA	4 cut(s)	152, 263, 300, 337
TaqII	GACCGA	1 cut(s)	367
TasI	AATT	4 cut(s)	136, 289, 302, 441
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	2 cut(s)	162, 452
TfiI	GAWTC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	3 cut(s)	81, 118, 441
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	280
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.