Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007683.1

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

26024 .. 26578

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007683.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgggtcttcgtcttcctctatcaaaatgcaactccggcgccggcagagtgctgtactcaaagcccgtccgcttcaagcaaccctccactccgtttccgactagcttctccacattcttcacgttctccgtcagcaatttgaacccctcctcgatcggcggcaggctggcttttgtcatttcaccgaacgatgaggttgtcggagacgccggcgggttcttggggctccagagcgtggaggactcgggttcgggttcttggtcgagcctcgtggcggtggacctcgtgaattgctggatcgaattaggcgggtcttcaacatatccgtttcgtattcgaatctcaaacccagagacccgttcttctccttccctctcggtcttgatcagtacgtcaacgacttgggtgtttctgggtgtttatgatatgggttgtgtgttgttattgcttgatctgatctgggtgtttctgattattggtaatatgttggatgatgatagtgaggtggcttattggtgggagtggtggaggatgaggaggaggagaggtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

184

Amino Acids

20.33

Weight (kDa)

6.24

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	235
AciI	CCGC	5 cut(s)	70, 159, 213, 275, 309
AclWI	GGATC	1 cut(s)	305
AcyI	GRCGYC	2 cut(s)	39, 207
AfaI	GTAC	2 cut(s)	56, 391
AfiI	CCNNNNNNNGG	2 cut(s)	235, 274
AgsI	TTSAA	3 cut(s)	76, 142, 318
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	198, 347
AlwI	GGATC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	174
AsuII	TTCGAA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	2 cut(s)	269, 284
BbsI	GAAGAC	2 cut(s)	5, 306
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	198, 347
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	40, 227
BpiI	GAAGAC	2 cut(s)	5, 306
BpmI	CTGGAG	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	337
BsaHI	GRCGYC	2 cut(s)	39, 207
BsaI	GGTCTC	1 cut(s)	347
BsaXI	ACNNNNNCTCC	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 274
Bse118I	RCCGGY	2 cut(s)	41, 209
BseGI	GGATG	2 cut(s)	496, 537
BseLI	CCNNNNNNNGG	2 cut(s)	235, 274
BseRI	GAGGAG	3 cut(s)	139, 550, 553
Bsh1285I	CGRYCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	36, 42, 210
BslI	CCNNNNNNNGG	2 cut(s)	235, 274
BsmAI	GTCTC	2 cut(s)	198, 347
BsmBI	CGTCTC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	5 cut(s)	153, 297, 384, 451, 456
BspACI	CCGC	5 cut(s)	70, 159, 213, 275, 309
BspLI	GGNNCC	2 cut(s)	40, 227
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	347
BsrFI	RCCGGY	2 cut(s)	41, 209
BssAI	RCCGGY	2 cut(s)	41, 209
BssMI	GATC	5 cut(s)	153, 297, 384, 451, 456
BssNI	GRCGYC	2 cut(s)	39, 207
BssSI	CACGAG	2 cut(s)	269, 284
Bst2BI	CACGAG	2 cut(s)	269, 284
BstACI	GRCGYC	2 cut(s)	39, 207
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	4 cut(s)	43, 164, 168, 211
BstF5I	GGATG	2 cut(s)	496, 537
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	156, 300, 387, 454, 459
BstMAI	GTCTC	2 cut(s)	198, 347
BstMBI	GATC	5 cut(s)	153, 297, 384, 451, 456
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstV2I	GAAGAC	2 cut(s)	5, 306
BtsCI	GGATG	2 cut(s)	496, 537
Cac8I	GCNNGC	4 cut(s)	43, 164, 168, 211
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	41, 209
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	55, 390
CviJI	RGCY	8 cut(s)	64, 105, 166, 170, 226, 267, 509, 552
CviKI_1	RGCY	8 cut(s)	64, 105, 166, 170, 226, 267, 509, 552
CviQI	GTAC	2 cut(s)	55, 390
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	5 cut(s)	155, 299, 386, 453, 458
DpnII	GATC	5 cut(s)	153, 297, 384, 451, 456
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	198
FaiI	YATR	4 cut(s)	322, 423, 428, 485
FauI	CCCGC	2 cut(s)	206, 302
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	2 cut(s)	503, 544
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	3 cut(s)	36, 42, 210
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 207
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	2 cut(s)	242, 339
HpaII	CCGG	3 cut(s)	36, 42, 210
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	280, 396
Hpy188I	TCNGA	4 cut(s)	99, 203, 456, 471
Hpy188III	TCNNGA	3 cut(s)	229, 286, 382
Hpy8I	GTNNAC	2 cut(s)	280, 396
HpyAV	CCTTC	1 cut(s)	378
HpyCH4IV	ACGT	2 cut(s)	122, 392
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpySE526I	ACGT	2 cut(s)	122, 392
Hsp92I	GRCGYC	2 cut(s)	39, 207
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	2 cut(s)	41, 209
KroNI	GCCGGC	2 cut(s)	43, 211
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	153, 297, 384, 451, 456
LmnI	GCTCC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	122, 392
MalI	GATC	5 cut(s)	155, 299, 386, 453, 458
MboI	GATC	5 cut(s)	153, 297, 384, 451, 456
MboII	GAAGA	4 cut(s)	5, 109, 306, 354
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	3 cut(s)	136, 289, 302
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	3 cut(s)	122, 181, 468
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	2 cut(s)	41, 209
MspI	CCGG	3 cut(s)	36, 42, 210
MwoI	GCNNNNNNNGC	1 cut(s)	36
NaeI	GCCGGC	2 cut(s)	43, 211
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	5 cut(s)	153, 297, 384, 451, 456
NgoMIV	GCCGGC	2 cut(s)	41, 209
NlaIV	GGNNCC	2 cut(s)	40, 227
NspV	TTCGAA	1 cut(s)	337
PdiI	GCCGGC	2 cut(s)	43, 211
PfeI	GAWTC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	161
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	1 cut(s)	236
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	40, 227
PspPI	GGNCC	1 cut(s)	280
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	56, 391
RsaNI	GTAC	2 cut(s)	55, 390
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	5 cut(s)	153, 297, 384, 451, 456
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	7 cut(s)	107, 125, 198, 285, 395, 507, 550
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	337
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	3 cut(s)	136, 289, 302
SsiI	CCGC	5 cut(s)	70, 159, 213, 275, 309
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	102
TaiI	ACGT	2 cut(s)	125, 395
TaqI	TCGA	4 cut(s)	152, 263, 300, 337
TaqII	GACCGA	1 cut(s)	367
TasI	AATT	3 cut(s)	136, 289, 302
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	339
TspGWI	ACGGA	3 cut(s)	81, 118, 315
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	280
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.