RLG00000028261

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001606
Physical Location & Seq
Reverse (-)
20658786 .. 20660562
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028261

Sequence Viewer

Length: 1113 bp
ATGTCCCAACGAATTCGCTCCATCATCTTTACTACTGCACTCCACCTTTACCTTTGCTTTTCCATCTTCCTCATTACGTCAGCCGTAACCGAATTCGACTTCAGAACCCTCACCCTCAACAGCCTCAAGCTCCTCGGCAACGCCCACTTGAACAATGGCAGCGTGCGTCTCACTTGCGACCTTGCCGTCCCTACCTCCGGCGCCGACAGAGTGCTGTACTCAAAGCCCGTCCACTTCAAGCAACCCTCCACTCCATTTCCGGCTAACTTCTCCACATTCTTCACGTTCTCCGTCAGCAATTTGAACCCCTCCTCGATCGGCGGCGGGCTGGCTTTTATCATCTCGCCGGACGATGAGGTTGTTGGAGACGCCGACGGGTTCTTGGGGCTCCAGAGCGTGGAGGACCTGGGTTTGGGTTCCGGGTCGAGCTTCGTGGCGGTGGAGTTTGACACGCTCATGGACGTAGAGTTCAAGGACATTAATAGCAACCATGTGGGCCTGGATCTCAACTCCGTGGTTTCGTCACAGCGCTTAGCCATGGACAACACCCAACGCCAACTTGATAATTTCTGTTCTCGCCTCCACGGTAAAATTAAATGGTGCTTTATTTGTGGAGTAGCCGCGGTAATTTTTCTTATCGTCGTTATGTGTTTCGTCCTCACCAAGAGCCCGAATAACGTCAACTGTCATGTAACCAGTGCATTGCTCACCGATTCCAACCTCACCCTTGAAATCACAGTTCGAAACCCGAACAGTTTCTACCGTGTCCACCATGATCACATTGACATTACTGCCAACTACAAAAACCAGACGTTGGGTTCGACATTGAATTATGCCTCCTTCTCGCAAGGACGTAATCGCGAAACACGGCTAACACCGTCCTTCAACGGGCTGATCCTCGGCGGAGGCGATGACCCCCGCGGGTCGAACGACTGCGGAAATAACTATTACGATATTATTGTCAAGCTCAACATGCAAGACGAGTACAAGAAACAGATTGTTCCCAAGAAGAGATTTCAAAGGAATTTGGAGTATACGTGCGAGTTGAAGGTTCCTTCTAGCAGTGGGAGTAGCTTCAACACCACCCTGTGCCGCTATCTACAAATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

371

Amino Acids

40.98

Weight (kDa)

6.74

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 31 - 184 9.9e-32 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 2 cut(s) 397, 814
AccI GTMKAC 1 cut(s) 1034
AccII CGCG 3 cut(s) 623, 861, 921
AclWI GGATC 2 cut(s) 510, 889
AcsI RAATTY 4 cut(s) 12, 92, 1024, 1104
AcuI CTGAAG 1 cut(s) 85
AcyI GRCGYC 2 cut(s) 201, 369
AdeI CACNNNGTG 1 cut(s) 1089
AfaI GTAC 2 cut(s) 218, 986
AfeI AGCGCT 1 cut(s) 530
AfiI CCNNNNNNNGG 5 cut(s) 197, 397, 412, 814, 888
AjnI CCWGG 2 cut(s) 405, 498
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
AluBI AGCT 4 cut(s) 130, 429, 967, 1074
AluI AGCT 4 cut(s) 130, 429, 967, 1074
Alw26I GTCTC 2 cut(s) 173, 360
AlwI GGATC 2 cut(s) 510, 889
Aor51HI AGCGCT 1 cut(s) 530
AoxI GGCC 1 cut(s) 496
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 4 cut(s) 12, 92, 1024, 1104
ArsI GACNNNNNNTTYG 2 cut(s) 802, 834
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 755
AspLEI GCGC 2 cut(s) 203, 531
AspS9I GGNCC 2 cut(s) 403, 496
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 4 cut(s) 103, 652, 700, 715
AsuII TTCGAA 1 cut(s) 742
AvaII GGWCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 390, 671
BbvI GCAGC 1 cut(s) 171
BccI CCATC 2 cut(s) 29, 71
BceAI ACGGC 3 cut(s) 68, 170, 884
BciT130I CCWGG 2 cut(s) 407, 500
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 173, 360
BfaI CTAG 1 cut(s) 1059
BfoI RGCGCY 2 cut(s) 204, 532
BisI GCNGC 4 cut(s) 160, 322, 621, 1093
BlpI GCTNAGC 1 cut(s) 532
BlsI GCNGC 4 cut(s) 161, 323, 622, 1094
Bme1390I CCNGG 3 cut(s) 407, 421, 500
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 403, 496
BmiI GGNNCC 4 cut(s) 202, 389, 418, 1053
BmrFI CCNGG 3 cut(s) 407, 421, 500
BpmI CTGGAG 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 532
Bpu14I TTCGAA 1 cut(s) 742
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 1038
BsaHI GRCGYC 2 cut(s) 201, 369
BsaJI CCNNGG 8 cut(s) 133, 406, 513, 537, 583, 621, 898, 919
BsaXI ACNNNNNCTCC 2 cut(s) 1022, 1052
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 397, 412, 814, 888
Bse1I ACTGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 701
BseBI CCWGG 2 cut(s) 407, 500
BseDI CCNNGG 8 cut(s) 133, 406, 513, 537, 583, 621, 898, 919
BseLI CCNNNNNNNGG 5 cut(s) 197, 397, 412, 814, 888
BseMI GCAATG 1 cut(s) 701
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 2 cut(s) 122, 301
BseXI GCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 21
Bsh1236I CGCG 3 cut(s) 623, 861, 921
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 498
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 318
BsiSI CCGG 4 cut(s) 198, 260, 347, 420
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 5 cut(s) 197, 397, 412, 814, 888
BsmAI GTCTC 2 cut(s) 173, 360
BsmBI CGTCTC 2 cut(s) 173, 360
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 742
Bsp1286I GDGCHC 2 cut(s) 390, 671
Bsp143I GATC 4 cut(s) 315, 502, 775, 894
Bsp1720I GCTNAGC 1 cut(s) 532
Bsp19I CCATGG 1 cut(s) 537
Bsp68I TCGCGA 1 cut(s) 861
BspANI GGCC 1 cut(s) 498
BspFNI CGCG 3 cut(s) 623, 861, 921
BspLI GGNNCC 4 cut(s) 202, 389, 418, 1053
BspPI GGATC 2 cut(s) 510, 889
BspT104I TTCGAA 1 cut(s) 742
BspT107I GGYRCC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 701
BsrI ACTGG 1 cut(s) 696
BssECI CCNNGG 8 cut(s) 133, 406, 513, 537, 583, 621, 898, 919
BssMI GATC 4 cut(s) 315, 502, 775, 894
BssNAI GTATAC 1 cut(s) 1035
BssNI GRCGYC 2 cut(s) 201, 369
BssT1I CCWWGG 1 cut(s) 537
Bst1107I GTATAC 1 cut(s) 1035
Bst2UI CCWGG 2 cut(s) 407, 500
Bst4CI ACNGT 6 cut(s) 587, 686, 739, 755, 764, 879
Bst6I CTCTTC 1 cut(s) 1004
BstACI GRCGYC 2 cut(s) 201, 369
BstBAI YACGTR 1 cut(s) 1038
BstBI TTCGAA 1 cut(s) 742
BstC8I GCNNGC 3 cut(s) 164, 326, 330
BstDEI CTNAG 1 cut(s) 532
BstDSI CCRYGG 5 cut(s) 513, 537, 583, 621, 919
BstFNI CGCG 3 cut(s) 623, 861, 921
BstH2I RGCGCY 2 cut(s) 204, 532
BstHHI GCGC 2 cut(s) 203, 531
BstKTI GATC 4 cut(s) 318, 505, 778, 897
BstMAI GTCTC 2 cut(s) 173, 360
BstMBI GATC 4 cut(s) 315, 502, 775, 894
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 973
BstNI CCWGG 2 cut(s) 407, 500
BstNSI RCATGY 1 cut(s) 976
BstSCI CCNGG 3 cut(s) 405, 419, 498
BstUI CGCG 3 cut(s) 623, 861, 921
BstV1I GCAGC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BstZ17I GTATAC 1 cut(s) 1035
BsuRI GGCC 1 cut(s) 498
BtgI CCRYGG 5 cut(s) 513, 537, 583, 621, 919
BtgZI GCGATG 1 cut(s) 924
BtsI GCAGTG 1 cut(s) 1069
BtsIMutI CAGTG 2 cut(s) 703, 1069
BtuMI TCGCGA 1 cut(s) 861
Cac8I GCNNGC 3 cut(s) 164, 326, 330
CfoI GCGC 2 cut(s) 203, 531
Cfr13I GGNCC 2 cut(s) 403, 496
Cfr42I CCGCGG 2 cut(s) 624, 922
CseI GACGC 2 cut(s) 155, 377
Csp6I GTAC 2 cut(s) 217, 985
CviAII CATG 7 cut(s) 457, 491, 538, 689, 773, 973, 1110
CviQI GTAC 2 cut(s) 217, 985
DdeI CTNAG 1 cut(s) 532
DinI GGCGCC 1 cut(s) 202
DpnI GATC 4 cut(s) 317, 504, 777, 896
DpnII GATC 4 cut(s) 315, 502, 775, 894
DraIII CACNNNGTG 1 cut(s) 1089
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 1004
EarI CTCTTC 1 cut(s) 1004
EciI GGCGGA 1 cut(s) 918
Eco130I CCWWGG 1 cut(s) 537
Eco24I GRGCYC 2 cut(s) 390, 671
Eco47I GGWCC 1 cut(s) 403
Eco47III AGCGCT 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 403
EcoRI GAATTC 2 cut(s) 12, 92
EcoRII CCWGG 2 cut(s) 405, 498
EcoT14I CCWWGG 1 cut(s) 537
EcoT38I GRGCYC 2 cut(s) 390, 671
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 537
Esp3I CGTCTC 2 cut(s) 173, 360
FaeI CATG 7 cut(s) 460, 494, 541, 692, 776, 976, 1113
FaqI GGGAC 1 cut(s) 173
FatI CATG 7 cut(s) 456, 490, 537, 688, 772, 972, 1109
FauI CCCGC 3 cut(s) 317, 914, 926
FbaI TGATCA 1 cut(s) 775
FblI GTMKAC 1 cut(s) 1034
Fnu4HI GCNGC 4 cut(s) 160, 322, 621, 1093
FriOI GRGCYC 2 cut(s) 390, 671
Fsp4HI GCNGC 4 cut(s) 160, 322, 621, 1093
FspBI CTAG 1 cut(s) 1059
GlaI GCGC 2 cut(s) 202, 530
GluI GCNGC 4 cut(s) 160, 322, 621, 1093
GsuI CTGGAG 1 cut(s) 374
HaeII RGCGCY 2 cut(s) 204, 532
HaeIII GGCC 1 cut(s) 498
HapII CCGG 4 cut(s) 198, 260, 347, 420
HgaI GACGC 2 cut(s) 155, 377
HhaI GCGC 2 cut(s) 203, 531
Hin1I GRCGYC 2 cut(s) 201, 369
Hin1II CATG 7 cut(s) 460, 494, 541, 692, 776, 976, 1113
Hin6I GCGC 2 cut(s) 201, 529
HinP1I GCGC 2 cut(s) 201, 529
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HinfI GANTC 1 cut(s) 713
HpaII CCGG 4 cut(s) 198, 260, 347, 420
HphI GGTGA 4 cut(s) 103, 652, 700, 715
Hpy166II GTNNAC 4 cut(s) 232, 682, 769, 1035
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 2 cut(s) 391, 860
Hpy8I GTNNAC 4 cut(s) 232, 682, 769, 1035
Hpy99I CGWCG 2 cut(s) 377, 644
HpyAV CCTTC 4 cut(s) 850, 892, 1042, 1065
HpyCH4III ACNGT 6 cut(s) 587, 686, 739, 755, 764, 879
HpyCH4IV ACGT 7 cut(s) 77, 284, 462, 678, 812, 853, 1037
HpyCH4V TGCA 3 cut(s) 38, 701, 976
HpyF10VI GCNNNNNNNGC 1 cut(s) 973
HpyF3I CTNAG 1 cut(s) 532
HpySE526I ACGT 7 cut(s) 77, 284, 462, 678, 812, 853, 1037
Hsp92I GRCGYC 2 cut(s) 201, 369
Hsp92II CATG 7 cut(s) 460, 494, 541, 692, 776, 976, 1113
HspAI GCGC 2 cut(s) 201, 529
KasI GGCGCC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 775
KspI CCGCGG 2 cut(s) 624, 922
Kzo9I GATC 4 cut(s) 315, 502, 775, 894
LmnI GCTCC 3 cut(s) 23, 135, 393
Lsp1109I GCAGC 1 cut(s) 171
MaeI CTAG 1 cut(s) 1059
MaeII ACGT 7 cut(s) 77, 284, 462, 678, 812, 853, 1037
MaeIII GTNAC 3 cut(s) 85, 522, 691
MalI GATC 4 cut(s) 317, 504, 777, 896
MboI GATC 4 cut(s) 315, 502, 775, 894
MboII GAAGA 3 cut(s) 58, 271, 1021
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 2 cut(s) 390, 671
MluCI AATT 9 cut(s) 12, 92, 298, 565, 591, 627, 829, 1024, 1104
Mly113I GGCGCC 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 343, 741
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 2 cut(s) 480, 594
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 2 cut(s) 623, 921
MspI CCGG 4 cut(s) 198, 260, 347, 420
MspR9I CCNGG 3 cut(s) 407, 421, 500
MvaI CCWGG 2 cut(s) 407, 500
MvnI CGCG 3 cut(s) 623, 861, 921
MwoI GCNNNNNNNGC 1 cut(s) 973
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 1 cut(s) 421
NcoI CCATGG 1 cut(s) 537
NdeII GATC 4 cut(s) 315, 502, 775, 894
NlaIII CATG 7 cut(s) 460, 494, 541, 692, 776, 976, 1113
NlaIV GGNNCC 4 cut(s) 202, 389, 418, 1053
NmeAIII GCCGAG 2 cut(s) 114, 879
NmuCI GTSAC 1 cut(s) 522
NruI TCGCGA 1 cut(s) 861
NspI RCATGY 1 cut(s) 976
NspV TTCGAA 1 cut(s) 742
PcsI WCGNNNNNNNCGW 2 cut(s) 818, 906
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 1 cut(s) 713
PflMI CCANNNNNTGG 2 cut(s) 397, 814
PkrI GCNGC 4 cut(s) 161, 323, 622, 1094
Ple19I CGATCG 1 cut(s) 318
PluTI GGCGCC 1 cut(s) 204
Ppu21I YACGTR 1 cut(s) 1038
PpuMI RGGWCCY 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 405, 498
PspGI CCWGG 2 cut(s) 405, 498
PspN4I GGNNCC 4 cut(s) 202, 389, 418, 1053
PspPI GGNCC 2 cut(s) 403, 496
PspPPI RGGWCCY 1 cut(s) 403
PsrI GAACNNNNNNTAC 2 cut(s) 743, 775
PsuI RGATCY 1 cut(s) 502
PvuI CGATCG 1 cut(s) 318
RruI TCGCGA 1 cut(s) 861
RsaI GTAC 2 cut(s) 218, 986
RsaNI GTAC 2 cut(s) 217, 985
RseI CAYNNNNRTG 1 cut(s) 455
SacII CCGCGG 2 cut(s) 624, 922
SaqAI TTAA 2 cut(s) 480, 594
SatI GCNGC 4 cut(s) 160, 322, 621, 1093
Sau3AI GATC 4 cut(s) 315, 502, 775, 894
Sau96I GGNCC 2 cut(s) 403, 496
ScrFI CCNGG 3 cut(s) 407, 421, 500
SduI GDGCHC 2 cut(s) 390, 671
SfoI GGCGCC 1 cut(s) 202
Sfr303I CCGCGG 2 cut(s) 624, 922
SfuI TTCGAA 1 cut(s) 742
SgrBI CCGCGG 2 cut(s) 624, 922
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 9 cut(s) 12, 92, 298, 565, 591, 627, 829, 1024, 1104
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 1 cut(s) 1059
StyD4I CCNGG 3 cut(s) 405, 419, 498
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 6 cut(s) 587, 686, 739, 755, 764, 879
TaiI ACGT 7 cut(s) 80, 287, 465, 681, 815, 856, 1040
TaqI TCGA 6 cut(s) 96, 314, 425, 742, 821, 926
TasI AATT 9 cut(s) 12, 92, 298, 565, 591, 627, 829, 1024, 1104
TatI WGTACW 2 cut(s) 216, 984
TauI GCSGC 3 cut(s) 324, 623, 1095
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 2 cut(s) 480, 594
Tru9I TTAA 2 cut(s) 480, 594
TscAI CASTG 2 cut(s) 703, 1069
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 522
TspGWI ACGGA 2 cut(s) 280, 502
TspRI CASTG 2 cut(s) 703, 1069
Van91I CCANNNNNTGG 2 cut(s) 397, 814
VpaK11BI GGWCC 1 cut(s) 403
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 4 cut(s) 12, 92, 1024, 1104
XceI RCATGY 1 cut(s) 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 1034
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.