Rmu_sc0002170.1_g000050

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002170.1
OG0001606
Physical Location & Seq
Reverse (-)
215299 .. 217733
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002170.1_g000050.1.cds

Sequence Viewer

Length: 804 bp
atgcgtccggccgccagaacgtggaagcagatggtgatctctggtggtgacaaggagagcgtggaggacccgggttcgggttctgggttgagcttcgtggcggtggacctcatgaattgctggatcgaattcggcgggtcgagtcgggtcttcaacatatccgttttgtattcgaatctcaaacccggagacccgctcctctccttccctctcgatcttgatcagtacctcaacgacttgggtgtttctgggtgtttaggatctaggttgtttctgggtgtttatgatctgggtggcttattggtgggagtggtggaggatgaggaggaggagaggtggctgagcttagtggggacgacgacgaaggtggagatggaattgtggcggccgagcttccatgagggttccacttccacagaccacatggcttcctccaaaactcaaccaccaccaccagagcaccacccctacatcccattaccccacaaccatagcgataatgttctaccatcttcttactcctcccagctcccacgacgcaacacaaccattcttctcactctcctcctcctcctcctcctatcttcctccctctacgtcttctggccctccgatccctccctcaagatagtatggctcaagctaaagagagtccacgtgcacacctggccgcgcgtaaccatcaacgtgtacatggcagtgaggatcaaggtctggaatgacgacgtttactcgatggactacgatgcgttggaggtcggggttggctgcagtcctatagagggaagaggctgggccaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

267

Amino Acids

29.83

Weight (kDa)

5.46

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 21
AccBSI CCGCTC 1 cut(s) 196
AccII CGCG 2 cut(s) 673, 675
AciI CCGC 6 cut(s) 12, 101, 135, 194, 385, 671
AclWI GGATC 4 cut(s) 131, 268, 608, 713
AcoI YGGCCR 3 cut(s) 9, 386, 668
AcsI RAATTY 1 cut(s) 128
AcvI CACGTG 1 cut(s) 658
AfaI GTAC 2 cut(s) 227, 692
AfiI CCNNNNNNNGG 4 cut(s) 21, 76, 77, 782
AflIII ACRYGT 1 cut(s) 687
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 2 cut(s) 665, 797
AluBI AGCT 5 cut(s) 93, 345, 393, 529, 643
AluI AGCT 5 cut(s) 93, 345, 393, 529, 643
Alw21I GWGCWC 2 cut(s) 462, 663
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 659
AlwI GGATC 4 cut(s) 131, 268, 608, 713
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 5 cut(s) 9, 386, 605, 668, 795
ApaLI GTGCAC 1 cut(s) 659
ApeKI GCWGC 1 cut(s) 768
ApoI RAATTY 1 cut(s) 128
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 4 cut(s) 67, 106, 606, 795
AsuC2I CCSGG 3 cut(s) 71, 72, 186
AsuHPI GGTGA 2 cut(s) 46, 59
AsuII TTCGAA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 2 cut(s) 67, 106
BaeGI GKGCMC 1 cut(s) 663
BbrPI CACGTG 1 cut(s) 658
BbsI GAAGAC 2 cut(s) 142, 592
Bbv12I GWGCWC 2 cut(s) 462, 663
BbvI GCAGC 1 cut(s) 755
BccI CCATC 5 cut(s) 25, 367, 517, 689, 730
BciT130I CCWGG 2 cut(s) 667, 799
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 3 cut(s) 71, 72, 186
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 2 cut(s) 769, 777
BisI GCNGC 4 cut(s) 12, 386, 671, 769
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 4 cut(s) 13, 387, 672, 770
Bme1390I CCNGG 5 cut(s) 71, 72, 186, 667, 799
Bme18I GGWCC 2 cut(s) 67, 106
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 4 cut(s) 67, 106, 606, 795
BmiI GGNNCC 2 cut(s) 69, 406
BmrFI CCNGG 5 cut(s) 71, 72, 186, 667, 799
BmsI GCATC 1 cut(s) 736
BpiI GAAGAC 2 cut(s) 142, 592
BplI GAGNNNNNCTC 2 cut(s) 180, 212
Bpu1102I GCTNAGC 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 173
BpuEI CTTGAG 2 cut(s) 608, 623
BpuMI CCSGG 3 cut(s) 71, 72, 186
BsaAI YACGTR 1 cut(s) 658
BsaBI GATNNNNATC 2 cut(s) 35, 219
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 76, 77, 782
Bse8I GATNNNNATC 2 cut(s) 35, 219
BseBI CCWGG 2 cut(s) 667, 799
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 325, 471
BseJI GATNNNNATC 2 cut(s) 35, 219
BseLI CCNNNNNNNGG 4 cut(s) 21, 76, 77, 782
BseMII CTCAG 1 cut(s) 332
BseSI GKGCMC 1 cut(s) 663
BseX3I CGGCCG 2 cut(s) 9, 386
BseXI GCAGC 1 cut(s) 755
BseYI CCCAGC 2 cut(s) 525, 792
Bsh1236I CGCG 2 cut(s) 673, 675
Bsh1285I CGRYCG 2 cut(s) 12, 389
BshFI GGCC 5 cut(s) 11, 388, 607, 670, 797
BsiEI CGRYCG 2 cut(s) 12, 389
BsiHKAI GWGCWC 2 cut(s) 462, 663
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 3 cut(s) 8, 71, 186
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 4 cut(s) 21, 76, 77, 782
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 5 cut(s) 11, 388, 607, 670, 797
Bso31I GGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 462, 663
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 8 cut(s) 36, 123, 214, 220, 260, 286, 613, 705
Bsp1720I GCTNAGC 1 cut(s) 341
BspACI CCGC 6 cut(s) 12, 101, 135, 194, 385, 671
BspANI GGCC 5 cut(s) 11, 388, 607, 670, 797
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 2 cut(s) 673, 675
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 69, 406
BspMAI CTGCAG 1 cut(s) 773
BspPI GGATC 4 cut(s) 131, 268, 608, 713
BspT104I TTCGAA 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 183
BsrBI CCGCTC 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 690
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 8 cut(s) 36, 123, 214, 220, 260, 286, 613, 705
Bst2UI CCWGG 2 cut(s) 667, 799
Bst6I CTCTTC 1 cut(s) 781
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 658
BstBI TTCGAA 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 341, 346
BstF5I GGATG 2 cut(s) 325, 471
BstFNI CGCG 2 cut(s) 673, 675
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 8 cut(s) 39, 126, 217, 223, 263, 289, 616, 708
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 8 cut(s) 36, 123, 214, 220, 260, 286, 613, 705
BstMCI CGRYCG 2 cut(s) 12, 389
BstMWI GCNNNNNNNGC 1 cut(s) 667
BstNI CCWGG 2 cut(s) 667, 799
BstSCI CCNGG 5 cut(s) 69, 70, 184, 665, 797
BstSFI CTRYAG 2 cut(s) 769, 777
BstSLI GKGCMC 1 cut(s) 663
BstUI CGCG 2 cut(s) 673, 675
BstV1I GCAGC 1 cut(s) 755
BstV2I GAAGAC 2 cut(s) 142, 592
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BstZI CGGCCG 2 cut(s) 9, 386
BsuRI GGCC 5 cut(s) 11, 388, 607, 670, 797
BtsCI GGATG 2 cut(s) 325, 471
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 1 cut(s) 705
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 675
Cfr13I GGNCC 4 cut(s) 67, 106, 606, 795
Cfr9I CCCGGG 1 cut(s) 70
CseI GACGC 1 cut(s) 546
Csp6I GTAC 2 cut(s) 226, 691
CviAII CATG 4 cut(s) 112, 398, 424, 694
CviQI GTAC 2 cut(s) 226, 691
DdeI CTNAG 2 cut(s) 341, 346
DpnI GATC 8 cut(s) 38, 125, 216, 222, 262, 288, 615, 707
DpnII GATC 8 cut(s) 36, 123, 214, 220, 260, 286, 613, 705
EaeI YGGCCR 3 cut(s) 9, 386, 668
EagI CGGCCG 2 cut(s) 9, 386
Eam1104I CTCTTC 1 cut(s) 781
EarI CTCTTC 1 cut(s) 781
EclXI CGGCCG 2 cut(s) 9, 386
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 67, 106
Eco52I CGGCCG 2 cut(s) 9, 386
Eco72I CACGTG 1 cut(s) 658
Eco88I CYCGRG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 665, 797
FaeI CATG 4 cut(s) 115, 401, 427, 697
FaiI YATR 9 cut(s) 113, 158, 285, 399, 425, 492, 634, 695, 779
FaqI GGGAC 1 cut(s) 367
FatI CATG 4 cut(s) 111, 397, 423, 693
FauI CCCGC 2 cut(s) 128, 201
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 12, 386, 671, 769
FokI GGATG 2 cut(s) 332, 458
Fsp4HI GCNGC 4 cut(s) 12, 386, 671, 769
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 674
GluI GCNGC 4 cut(s) 12, 386, 671, 769
GsaI CCCAGC 2 cut(s) 529, 796
HaeIII GGCC 5 cut(s) 11, 388, 607, 670, 797
HapII CCGG 3 cut(s) 8, 71, 186
HgaI GACGC 1 cut(s) 546
HhaI GCGC 1 cut(s) 675
Hin1II CATG 4 cut(s) 115, 401, 427, 697
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HinfI GANTC 3 cut(s) 142, 175, 651
HpaII CCGG 3 cut(s) 8, 71, 186
HphI GGTGA 2 cut(s) 46, 59
Hpy166II GTNNAC 5 cut(s) 106, 655, 661, 691, 730
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 5 cut(s) 112, 212, 218, 625, 715
Hpy8I GTNNAC 5 cut(s) 106, 655, 661, 691, 730
Hpy99I CGWCG 4 cut(s) 361, 364, 540, 728
HpyAV CCTTC 2 cut(s) 214, 358
HpyCH4IV ACGT 5 cut(s) 20, 597, 657, 687, 726
HpyCH4V TGCA 2 cut(s) 661, 771
HpyF10VI GCNNNNNNNGC 1 cut(s) 667
HpyF3I CTNAG 2 cut(s) 341, 346
HpySE526I ACGT 5 cut(s) 20, 597, 657, 687, 726
Hsp92II CATG 4 cut(s) 115, 401, 427, 697
HspAI GCGC 1 cut(s) 673
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 8 cut(s) 36, 123, 214, 220, 260, 286, 613, 705
LmnI GCTCC 2 cut(s) 201, 534
Lsp1109I GCAGC 1 cut(s) 755
LweI GCATC 1 cut(s) 736
MaeI CTAG 1 cut(s) 264
MaeII ACGT 5 cut(s) 20, 597, 657, 687, 726
MaeIII GTNAC 2 cut(s) 47, 676
MalI GATC 8 cut(s) 38, 125, 216, 222, 262, 288, 615, 707
MbiI CCGCTC 1 cut(s) 196
MboI GATC 8 cut(s) 36, 123, 214, 220, 260, 286, 613, 705
MboII GAAGA 6 cut(s) 142, 504, 545, 576, 592, 798
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 462, 663
MluCI AATT 3 cut(s) 115, 128, 377
MlyI GAGTC 2 cut(s) 151, 660
MmeI TCCRAC 1 cut(s) 732
MslI CAYNNNNRTG 2 cut(s) 686, 698
MspI CCGG 3 cut(s) 8, 71, 186
MspR9I CCNGG 5 cut(s) 71, 72, 186, 667, 799
MvaI CCWGG 2 cut(s) 667, 799
MvnI CGCG 2 cut(s) 673, 675
MwoI GCNNNNNNNGC 1 cut(s) 667
NciI CCSGG 3 cut(s) 71, 72, 186
NdeII GATC 8 cut(s) 36, 123, 214, 220, 260, 286, 613, 705
NlaIII CATG 4 cut(s) 115, 401, 427, 697
NlaIV GGNNCC 2 cut(s) 69, 406
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 47
NspV TTCGAA 1 cut(s) 173
PagI TCATGA 1 cut(s) 111
PfeI GAWTC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 21
PkrI GCNGC 4 cut(s) 13, 387, 672, 770
PleI GAGTC 2 cut(s) 150, 659
PmaCI CACGTG 1 cut(s) 658
PmlI CACGTG 1 cut(s) 658
PpsI GAGTC 2 cut(s) 150, 659
Ppu21I YACGTR 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 665, 797
PspCI CACGTG 1 cut(s) 658
PspFI CCCAGC 2 cut(s) 525, 792
PspGI CCWGG 2 cut(s) 665, 797
PspN4I GGNNCC 2 cut(s) 69, 406
PspPI GGNCC 4 cut(s) 67, 106, 606, 795
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 773
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 2 cut(s) 227, 692
RsaNI GTAC 2 cut(s) 226, 691
RseI CAYNNNNRTG 2 cut(s) 686, 698
SatI GCNGC 4 cut(s) 12, 386, 671, 769
Sau3AI GATC 8 cut(s) 36, 123, 214, 220, 260, 286, 613, 705
Sau96I GGNCC 4 cut(s) 67, 106, 606, 795
SchI GAGTC 2 cut(s) 151, 660
ScrFI CCNGG 5 cut(s) 71, 72, 186, 667, 799
SduI GDGCHC 2 cut(s) 462, 663
SfaNI GCATC 1 cut(s) 736
SfcI CTRYAG 2 cut(s) 769, 777
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 2 cut(s) 67, 106
SmaI CCCGGG 1 cut(s) 72
SmiMI CAYNNNNRTG 2 cut(s) 686, 698
SmlI CTYRAG 2 cut(s) 623, 638
SmoI CTYRAG 2 cut(s) 623, 638
Sse9I AATT 3 cut(s) 115, 128, 377
SsiI CCGC 6 cut(s) 12, 101, 135, 194, 385, 671
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 5 cut(s) 69, 70, 184, 665, 797
TaiI ACGT 5 cut(s) 23, 600, 660, 690, 729
TaqI TCGA 5 cut(s) 126, 140, 173, 213, 734
TasI AATT 3 cut(s) 115, 128, 377
TatI WGTACW 1 cut(s) 690
TauI GCSGC 3 cut(s) 14, 388, 673
TfiI GAWTC 1 cut(s) 175
TscAI CASTG 1 cut(s) 705
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 768
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 151
TspMI CCCGGG 1 cut(s) 70
TspRI CASTG 1 cut(s) 705
Van91I CCANNNNNTGG 1 cut(s) 21
VneI GTGCAC 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 67, 106
XapI RAATTY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XmaI CCCGGG 1 cut(s) 70
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.