Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001606

Physical Location & Seq

Genomic Coordinates Forward (+)

15878131 .. 15881530

Gene Structure 3400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG178400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATTGTGGACTCCTCCGCACAAAGATCTGGTTGCTCAGGCCCACAATGGTTTGGGAAGACGACTTGTTTCGTCCTTGGTATGCTCAACCATGCTATTTCAATGGAGGTTGAAGAAGAACCAGCAAAGTCATGTGGGAGCAAATGCCATCTCGCAATAACCGAATTCGACTTCGGAACCCTCACCCTCAGCAGCCTCAAGCTTCTCGGCGACGCCCACTTGAACAATGGCAGTGTGCGTCTCACTCGCGACCTTGCCGTCCCCAACTTTGGTGCCGGCAGAGTGCTGTACTCGAAGCCCGTCCGCTTCAATCAACCCTCCACTCCATTTCCGGCTAGCTTCTCCACATTCTTCACGTTCTCCGTCAGCAATTTGAACCCATCCTCGATCTGCGGCGGGTTGGCTTTTATCATCTCGCAGGACAATGAGGTCGTCGGAGACGCCGACGGGTTCTTGGGGCTCCAGAGCGTGGAGGACTCGGGTTCGGGTTCTGGGTCGAGCTTCGTGGCGATGGAGTTTGACACGCTCATGGATGTGGAGTTCAAGGACATTAATAGCAACCACGTAGGCCTAGATCTCAACTCCATGGTTTCATCACAGTCCAGCTTTTGTCTGCTGTTGGATGATTCAGCAAAGCAGTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

215

Amino Acids

22.91

Weight (kDa)

4.58

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	55 - 201	6.3e-33	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04241 FvH4_5g31301 FvH4_7g13661
pyrus_communis	pycom13g16720
rosa_chinensis	RchiOBHm_Chr3g0471751
rosa_laevigata	RLG00000006595 RLG00000028261
rosa_multiflora	Rmu_co7968634.1_g000001 Rmu_co8107114.1_g000001 Rmu_sc0000083.1_g000028 Rmu_sc0000369.1_g000013 Rmu_sc0000657.1_g000016 Rmu_sc0002002.1_g000011 Rmu_sc0002170.1_g000050 Rmu_sc0002665.1_g000005 Rmu_sc0002674.1_g000001 Rmu_sc0002835.1_g000013 Rmu_sc0002846.1_g000001 Rmu_sc0005173.1_g000026 Rmu_sc0005385.1_g000025 Rmu_sc0005947.1_g000019 Rmu_sc0006187.1_g000008 Rmu_sc0007683.1_g000006 Rmu_sc0009698.1_g000002 Rmu_sc0010695.1_g000003 Rmu_sc0012551.1_g000002 Rmu_sc0021704.1_g000003 Rmu_sc0026176.1_g000001 Rmu_sc0034984.1_g000001 Rmu_ssc0000480.1_g000030
rosa_roxburghii	Rroxscaffold_1G00013910 Rroxscaffold_2G00090660 Rroxscaffold_4G00301690 Rroxscaffold_6G00423540 Rroxscaffold_6G00424040
rosa_rugosa	Rorug01G0237600
rosa_samantha	Rh1AG249600 Rh1BG219800 Rh1DG246800 Rh2AG102200 Rh3CG187300 Rh3CG240200 Rh3CG334000 Rh3DG178400 Rh3DG203400 Rh4BG333800 Rh4DG072900 Rh5CG492800 Rh7BG430300
rosa_wichuraiana	Rw1G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	257, 428
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccII	CGCG	1 cut(s)	249
AciI	CCGC	4 cut(s)	18, 304, 393, 396
AcsI	RAATTY	1 cut(s)	164
AcyI	GRCGYC	2 cut(s)	213, 441
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	269, 469
AgsI	TTSAA	6 cut(s)	102, 113, 223, 310, 376, 544
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	4 cut(s)	202, 339, 501, 606
AluI	AGCT	4 cut(s)	202, 339, 501, 606
Alw26I	GTCTC	2 cut(s)	245, 432
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	2 cut(s)	40, 568
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	164
AseI	ATTAAT	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	3 cut(s)	156, 388, 505
BceAI	ACGGC	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	245, 432
BfaI	CTAG	2 cut(s)	336, 572
BglII	AGATCT	2 cut(s)	26, 574
BisI	GCNGC	2 cut(s)	193, 394
BlsI	GCNGC	2 cut(s)	194, 395
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	3 cut(s)	178, 274, 461
BmtI	GCTAGC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	446
Bpu10I	CCTNAGC	2 cut(s)	37, 188
BpuEI	CTTGAG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	565
BsaHI	GRCGYC	2 cut(s)	213, 441
BsaJI	CCNNGG	2 cut(s)	76, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 469
Bse118I	RCCGGY	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	76, 585
BseGI	GGATG	3 cut(s)	380, 538, 628
BseLI	CCNNNNNNNGG	2 cut(s)	269, 469
BseMII	CTCAG	2 cut(s)	51, 202
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	42, 570
BshNI	GGYRCC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	276, 332
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	269, 469
BsmAI	GTCTC	2 cut(s)	245, 432
BsmBI	CGTCTC	2 cut(s)	245, 432
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	42, 570
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	26, 387, 574
Bsp19I	CCATGG	1 cut(s)	585
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	4 cut(s)	18, 304, 393, 396
BspANI	GGCC	2 cut(s)	42, 570
BspCNI	CTCAG	2 cut(s)	50, 201
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	178, 274, 461
BspOI	GCTAGC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	76, 585
BssMI	GATC	3 cut(s)	26, 387, 574
BssNI	GRCGYC	2 cut(s)	213, 441
BssT1I	CCWWGG	2 cut(s)	76, 585
Bst4CI	ACNGT	1 cut(s)	600
BstACI	GRCGYC	2 cut(s)	213, 441
BstBAI	YACGTR	1 cut(s)	565
BstC8I	GCNNGC	2 cut(s)	277, 337
BstDEI	CTNAG	2 cut(s)	37, 188
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	3 cut(s)	380, 538, 628
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	29, 390, 577
BstMAI	GTCTC	2 cut(s)	245, 432
BstMBI	GATC	3 cut(s)	26, 387, 574
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	26, 574
BstYI	RGATCY	2 cut(s)	26, 574
BsuRI	GGCC	2 cut(s)	42, 570
BtgI	CCRYGG	1 cut(s)	585
BtgZI	GCGATG	1 cut(s)	524
BtsCI	GGATG	3 cut(s)	380, 538, 628
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
BtuMI	TCGCGA	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	277, 337
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	3 cut(s)	221, 227, 449
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	92, 132, 529, 586
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	37, 188
DpnI	GATC	3 cut(s)	28, 389, 576
DpnII	GATC	3 cut(s)	26, 387, 574
DrdI	GACNNNNNNGTC	2 cut(s)	257, 428
DseDI	GACNNNNNNGTC	2 cut(s)	257, 428
Eco130I	CCWWGG	2 cut(s)	76, 585
Eco147I	AGGCCT	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	76, 585
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	76, 585
Esp3I	CGTCTC	2 cut(s)	245, 432
FaeI	CATG	4 cut(s)	95, 135, 532, 589
FaiI	YATR	5 cut(s)	83, 93, 133, 530, 587
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	4 cut(s)	91, 131, 528, 585
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	2 cut(s)	193, 394
FokI	GGATG	3 cut(s)	367, 545, 635
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	193, 394
FspBI	CTAG	2 cut(s)	336, 572
GluI	GCNGC	2 cut(s)	193, 394
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	42, 570
HapII	CCGG	2 cut(s)	276, 332
HgaI	GACGC	3 cut(s)	221, 227, 449
Hin1I	GRCGYC	2 cut(s)	213, 441
Hin1II	CATG	4 cut(s)	95, 135, 532, 589
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	11, 476, 626
HpaII	CCGG	2 cut(s)	276, 332
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	176, 437
Hpy188III	TCNNGA	2 cut(s)	248, 463
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	3 cut(s)	215, 437, 449
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	2 cut(s)	356, 564
HpyF3I	CTNAG	2 cut(s)	37, 188
HpySE526I	ACGT	2 cut(s)	356, 564
Hsp92I	GRCGYC	2 cut(s)	213, 441
Hsp92II	CATG	4 cut(s)	95, 135, 532, 589
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	26, 387, 574
LmnI	GCTCC	2 cut(s)	138, 465
LpnPI	CCDG	9 cut(s)	15, 24, 135, 289, 345, 404, 476, 477, 616
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	336, 572
MaeII	ACGT	2 cut(s)	356, 564
MalI	GATC	3 cut(s)	28, 389, 576
MboI	GATC	3 cut(s)	26, 387, 574
MboII	GAAGA	4 cut(s)	70, 125, 128, 343
MflI	RGATCY	2 cut(s)	26, 574
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	2 cut(s)	164, 370
MlyI	GAGTC	2 cut(s)	5, 470
MmeI	TCCRAC	2 cut(s)	415, 600
MnlI	CCTC	9 cut(s)	25, 100, 191, 197, 206, 328, 394, 421, 466
MroNI	GCCGGC	1 cut(s)	275
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	2 cut(s)	527, 533
MspI	CCGG	2 cut(s)	276, 332
MvnI	CGCG	1 cut(s)	249
NaeI	GCCGGC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	3 cut(s)	26, 387, 574
NgoMIV	GCCGGC	1 cut(s)	275
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	4 cut(s)	95, 135, 532, 589
NlaIV	GGNNCC	3 cut(s)	178, 274, 461
NmeAIII	GCCGAG	1 cut(s)	186
NruI	TCGCGA	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 441
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	626
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	194, 395
PleI	GAGTC	2 cut(s)	5, 470
PpsI	GAGTC	2 cut(s)	5, 470
Ppu21I	YACGTR	1 cut(s)	565
PshBI	ATTAAT	1 cut(s)	552
PspN4I	GGNNCC	3 cut(s)	178, 274, 461
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	26, 574
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	527, 533
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	2 cut(s)	193, 394
Sau3AI	GATC	3 cut(s)	26, 387, 574
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	2 cut(s)	5, 470
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	9 cut(s)	111, 204, 255, 341, 359, 432, 503, 567, 608
SmiMI	CAYNNNNRTG	2 cut(s)	527, 533
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	164, 370
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	4 cut(s)	18, 304, 393, 396
SspMI	CTAG	2 cut(s)	336, 572
StuI	AGGCCT	1 cut(s)	570
StyI	CCWWGG	2 cut(s)	76, 585
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	2 cut(s)	359, 567
TaqI	TCGA	4 cut(s)	168, 293, 386, 497
TasI	AATT	2 cut(s)	164, 370
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	582
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	552
XapI	RAATTY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	2 cut(s)	336, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.