Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

17226199 .. 17227062

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGTTCTCTCAATCCCAAGGGGAACAATCTCCGACGGGTCGTTGAGACCTCTGACGGAAACCTCCGCATCTTCGCTTTCTCCATCTCCGACCACCACGATCATCTTGATCTGAGACTCATGGGGGATCTGAGTTCCGAAACCGATCAACCTTCTCGCAAGCGCAAGAGGAACGATCTCCATCTCCGACGCGACGTTGCGACCTCCGACGGAAACCTCCGCATCTTCGTTTTCTCCGACGACGGTGACAACGGCGGCTCCAGAAAACGCATCAGGCGAGAGTCGCCAAACCAGAGCCGCACCGCCGTCGTTTCGTCCCCCAAGCCCGCCGTCATCTCCGCCGTGAAACCCTATGACGGTGGGGATCTGGATATTGGGGAGTTCGAGAAACACACAAAGGGAATCGGAATGAAGTTGCTGAGGAAGATGGGGTATAATGGAGGTGGATTGGGGAAGAACGAGCAAGGTACTGTGACTCCGATTCAGGCCGAATTGCGGCCGAAGAATAATGGCCTTGGTTTTTATTACAAGGCAGGGGATAAGCTGCTGCGGCCCACATTGTTTGTGAAAGCCAAGGTGAAGGAGCACATGGAGAGCAAAACAGCAACAGCAGTGACTAAGAAAAGCCTAAATAGTACTAGTACTACAAATGAGGAGCCTCGGCGGCCTATGGAGGAGCCGCAGCGCCCGGAGGTGATTAGCAGCGCCGCCATGGCCGAGGTGGAGAAGAAGATGAGTGCAAAAGCTGTTGATTTGCTGGAGAAGGTGTTGGCTGATATGAGAAGACCTCTGATTGGAATGTTGGCGGACTTTGAGAATTTGAGTTTGAAAGACACCAGTTCCAGGTGTATCTTAGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

288

Amino Acids

31.82

Weight (kDa)

9.66

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	132 - 173	5.1e-15	G-patch domain
G-patch_2	PF12656	135 - 174	3.6e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AclWI	GGATC	2 cut(s)	135, 372
AcoI	YGGCCR	2 cut(s)	497, 714
AcsI	RAATTY	1 cut(s)	817
AfaI	GTAC	3 cut(s)	469, 637, 643
AfiI	CCNNNNNNNGG	4 cut(s)	356, 495, 794, 843
AgsI	TTSAA	1 cut(s)	829
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	842
AluBI	AGCT	3 cut(s)	544, 746, 857
AluI	AGCT	3 cut(s)	544, 746, 857
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	2 cut(s)	41, 109
AlwI	GGATC	2 cut(s)	135, 372
AoxI	GGCC	6 cut(s)	486, 497, 511, 551, 665, 714
ApeKI	GCWGC	4 cut(s)	544, 547, 682, 702
ApoI	RAATTY	1 cut(s)	817
AspLEI	GCGC	3 cut(s)	165, 687, 707
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	257, 589, 706
BbsI	GAAGAC	1 cut(s)	790
Bbv12I	GWGCWC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	4 cut(s)	531, 534, 694, 714
BccI	CCATC	3 cut(s)	92, 189, 421
BceAI	ACGGC	4 cut(s)	268, 290, 314, 326
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	1 cut(s)	844
BcnI	CCSGG	1 cut(s)	689
BcoDI	GTCTC	2 cut(s)	41, 109
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	1 cut(s)	639
BfoI	RGCGCY	2 cut(s)	688, 708
BglI	GCCNNNNNGGC	2 cut(s)	664, 713
BmcAI	AGTACT	2 cut(s)	637, 643
Bme1390I	CCNGG	2 cut(s)	689, 844
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	3 cut(s)	259, 657, 678
BmrFI	CCNGG	2 cut(s)	689, 844
BmsI	GCATC	3 cut(s)	78, 231, 279
BpiI	GAAGAC	1 cut(s)	790
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
BpmI	CTGGAG	2 cut(s)	244, 779
Bpu10I	CCTNAGC	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	689
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	6 cut(s)	18, 514, 573, 659, 711, 717
BsaXI	ACNNNNNCTCC	6 cut(s)	242, 272, 460, 490, 752, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	356, 495, 794, 843
Bse1I	ACTGG	1 cut(s)	837
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	844
BseDI	CCNNGG	6 cut(s)	18, 514, 573, 659, 711, 717
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	4 cut(s)	356, 495, 794, 843
BseMII	CTCAG	3 cut(s)	104, 122, 410
BseNI	ACTGG	1 cut(s)	837
BseRI	GAGGAG	2 cut(s)	668, 689
BseX3I	CGGCCG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	531, 534, 694, 714
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	500
BshFI	GGCC	6 cut(s)	488, 499, 513, 553, 667, 716
BsiEI	CGRYCG	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	689
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	4 cut(s)	356, 495, 794, 843
BsmAI	GTCTC	2 cut(s)	41, 109
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	6 cut(s)	488, 499, 513, 553, 667, 716
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	6 cut(s)	100, 109, 127, 145, 175, 364
Bsp19I	CCATGG	1 cut(s)	711
BspANI	GGCC	6 cut(s)	488, 499, 513, 553, 667, 716
BspCNI	CTCAG	3 cut(s)	105, 123, 411
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	259, 657, 678
BspPI	GGATC	2 cut(s)	135, 372
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	837
BssECI	CCNNGG	6 cut(s)	18, 514, 573, 659, 711, 717
BssMI	GATC	6 cut(s)	100, 109, 127, 145, 175, 364
BssT1I	CCWWGG	4 cut(s)	18, 514, 573, 711
Bst2UI	CCWGG	1 cut(s)	844
Bst4CI	ACNGT	3 cut(s)	245, 359, 472
BstC8I	GCNNGC	2 cut(s)	161, 327
BstDEI	CTNAG	5 cut(s)	113, 131, 419, 618, 853
BstDSI	CCRYGG	1 cut(s)	711
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	2 cut(s)	688, 708
BstHHI	GCGC	3 cut(s)	165, 687, 707
BstKTI	GATC	6 cut(s)	103, 112, 130, 148, 178, 367
BstMAI	GTCTC	2 cut(s)	41, 109
BstMBI	GATC	6 cut(s)	100, 109, 127, 145, 175, 364
BstMCI	CGRYCG	1 cut(s)	500
BstMWI	GCNNNNNNNGC	4 cut(s)	283, 550, 664, 713
BstNI	CCWGG	1 cut(s)	844
BstSCI	CCNGG	2 cut(s)	687, 842
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	4 cut(s)	531, 534, 694, 714
BstV2I	GAAGAC	1 cut(s)	790
BstX2I	RGATCY	2 cut(s)	127, 364
BstYI	RGATCY	2 cut(s)	127, 364
BstZI	CGGCCG	1 cut(s)	497
BsuRI	GGCC	6 cut(s)	488, 499, 513, 553, 667, 716
BtgI	CCRYGG	1 cut(s)	711
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	2 cut(s)	161, 327
CfoI	GCGC	3 cut(s)	165, 687, 707
Cfr13I	GGNCC	1 cut(s)	552
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	3 cut(s)	468, 636, 642
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	3 cut(s)	121, 589, 712
CviQI	GTAC	3 cut(s)	468, 636, 642
DdeI	CTNAG	5 cut(s)	113, 131, 419, 618, 853
DpnI	GATC	6 cut(s)	102, 111, 129, 147, 177, 366
DpnII	GATC	6 cut(s)	100, 109, 127, 145, 175, 364
EaeI	YGGCCR	2 cut(s)	497, 714
EagI	CGGCCG	1 cut(s)	497
EciI	GGCGGA	2 cut(s)	328, 821
EclXI	CGGCCG	1 cut(s)	497
Eco130I	CCWWGG	4 cut(s)	18, 514, 573, 711
Eco31I	GGTCTC	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	842
EcoT14I	CCWWGG	4 cut(s)	18, 514, 573, 711
ErhI	CCWWGG	4 cut(s)	18, 514, 573, 711
FaeI	CATG	3 cut(s)	124, 592, 715
FaiI	YATR	8 cut(s)	122, 354, 435, 590, 671, 713, 779, 860
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	120, 588, 711
FauI	CCCGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	3 cut(s)	164, 686, 706
GsuI	CTGGAG	2 cut(s)	244, 779
HaeII	RGCGCY	2 cut(s)	688, 708
HaeIII	GGCC	6 cut(s)	488, 499, 513, 553, 667, 716
HapII	CCGG	1 cut(s)	689
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	3 cut(s)	165, 687, 707
Hin1II	CATG	3 cut(s)	124, 592, 715
Hin6I	GCGC	3 cut(s)	163, 685, 705
HinP1I	GCGC	3 cut(s)	163, 685, 705
HinfI	GANTC	5 cut(s)	117, 281, 402, 475, 481
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	3 cut(s)	257, 589, 706
Hpy188III	TCNNGA	4 cut(s)	107, 261, 368, 385
Hpy99I	CGWCG	7 cut(s)	39, 192, 197, 212, 242, 245, 311
HpyAV	CCTTC	3 cut(s)	162, 574, 757
HpyCH4III	ACNGT	3 cut(s)	245, 359, 472
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	283, 550, 664, 713
HpyF3I	CTNAG	5 cut(s)	113, 131, 419, 618, 853
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	124, 592, 715
HspAI	GCGC	3 cut(s)	163, 685, 705
Kzo9I	GATC	6 cut(s)	100, 109, 127, 145, 175, 364
LmnI	GCTCC	4 cut(s)	263, 583, 655, 676
Lsp1109I	GCAGC	4 cut(s)	531, 534, 694, 714
LweI	GCATC	3 cut(s)	78, 231, 279
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	245, 472, 613
MalI	GATC	6 cut(s)	102, 111, 129, 147, 177, 366
MboI	GATC	6 cut(s)	100, 109, 127, 145, 175, 364
MboII	GAAGA	8 cut(s)	64, 217, 436, 466, 514, 739, 742, 795
MflI	RGATCY	2 cut(s)	127, 364
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	2 cut(s)	491, 817
MlyI	GAGTC	3 cut(s)	111, 290, 469
MmeI	TCCRAC	5 cut(s)	58, 114, 211, 231, 261
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	2 cut(s)	689, 844
MvaI	CCWGG	1 cut(s)	844
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	283, 550, 664, 713
NciI	CCSGG	1 cut(s)	689
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	6 cut(s)	100, 109, 127, 145, 175, 364
NlaIII	CATG	3 cut(s)	124, 592, 715
NlaIV	GGNNCC	3 cut(s)	259, 657, 678
NmeAIII	GCCGAG	2 cut(s)	640, 742
NmuCI	GTSAC	3 cut(s)	245, 472, 613
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 274
PfeI	GAWTC	2 cut(s)	402, 481
PleI	GAGTC	3 cut(s)	111, 289, 469
PpsI	GAGTC	3 cut(s)	111, 289, 469
Psp6I	CCWGG	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	842
PspN4I	GGNNCC	3 cut(s)	259, 657, 678
PspPI	GGNCC	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	127, 364
RsaI	GTAC	3 cut(s)	469, 637, 643
RsaNI	GTAC	3 cut(s)	468, 636, 642
Sau3AI	GATC	6 cut(s)	100, 109, 127, 145, 175, 364
Sau96I	GGNCC	1 cut(s)	552
ScaI	AGTACT	2 cut(s)	637, 643
SchI	GAGTC	3 cut(s)	111, 290, 469
ScrFI	CCNGG	2 cut(s)	689, 844
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	3 cut(s)	78, 231, 279
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	2 cut(s)	491, 817
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	687, 842
StyI	CCWWGG	4 cut(s)	18, 514, 573, 711
TaaI	ACNGT	3 cut(s)	245, 359, 472
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	491, 817
TatI	WGTACW	2 cut(s)	635, 641
TauI	GCSGC	7 cut(s)	258, 300, 499, 553, 667, 682, 710
TfiI	GAWTC	2 cut(s)	402, 481
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	3 cut(s)	245, 472, 613
TseI	GCWGC	4 cut(s)	544, 547, 682, 702
Tsp45I	GTSAC	3 cut(s)	245, 472, 613
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	2 cut(s)	72, 225
TspRI	CASTG	1 cut(s)	618
XapI	RAATTY	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XspI	CTAG	1 cut(s)	639
ZrmI	AGTACT	2 cut(s)	637, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.