Rmu_sc0006138.1_g000006

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006138.1
Physical Location & Seq
Forward (+)
37683 .. 42538
4856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006138.1_g000006.1.cds

Sequence Viewer

Length: 936 bp
atgagaggaagtttcccttttactgtagtgacgaccggagaagaaagcaggggtcgtgggtgcccagagaagatttctggtgcttacggcgatgacgcgtgggttagttttgggaataccccaatgacggagaagctgccagtggatcgtcggagaccgctgagcacgatggtggtggaggtgatgcggggttatgcctggatatccactggcttagaccccattggtccttctcttattggcagctgtacaggcccagtaggcccaatgacaagtcctgcatctaaatctgatctgagattgatggatttgagatctgaaatcgagaggctctgcagatctgaatctggtctgagatcgacggatctgagatctgaaatcgatcgcctttctcgcaagcgcaaggaggacaatctccgacgcgtcgttgagacctcggaaggaaatctccgcatcttcgttctcgcattctcctcctccaaccatgacgtcgacgaaggagacaacggcggctctagaaaacgcatgaggcgagactgcggctgcaacgccgtcgtttcatccaccaagctcgccgcggagcccaccaggcccgtcagatctgctgtgaaaccctatgacgacggtggggatctgaataaacacacaaagggcatcggcatgaaattgcagatgaagatgggctataacggacgtggactcggcaaaaacgaggaagacactagtacagtggaagaacacaagcccaacgagcagcctaatgaggcaattaccagtgccgccgccaccgggatggagaagaagacgattaccaaaggtgtcgatttgctgggaaaggtgatggctgatatgagaagacctcttgatggaatcttggccgactttgagaacttgagtttgaaaggtaccagctccacgtgcatcttagctatgtag

Protein Analysis

311

Amino Acids

33.91

Weight (kDa)

8.68

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 492
Acc65I GGTACC 1 cut(s) 905
AccB1I GGYRCC 2 cut(s) 60, 905
AccI GTMKAC 1 cut(s) 492
AccII CGCG 3 cut(s) 98, 423, 578
AciI CCGC 9 cut(s) 158, 187, 451, 510, 540, 576, 578, 780, 783
AclWI GGATC 3 cut(s) 153, 372, 639
AcoI YGGCCR 1 cut(s) 876
AcvI CACGTG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 3 cut(s) 250, 727, 907
AfiI CCNNNNNNNGG 3 cut(s) 127, 789, 866
AflIII ACRYGT 2 cut(s) 96, 421
AgsI TTSAA 1 cut(s) 901
AhlI ACTAGT 1 cut(s) 722
AjiI CACGTC 1 cut(s) 695
AjnI CCWGG 2 cut(s) 197, 587
AleI CACNNNNGTG 1 cut(s) 170
AluBI AGCT 5 cut(s) 136, 246, 571, 912, 929
AluI AGCT 5 cut(s) 136, 246, 571, 912, 929
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 4 cut(s) 148, 425, 495, 528
AlwI GGATC 3 cut(s) 153, 372, 639
AoxI GGCC 4 cut(s) 253, 262, 590, 876
ApeKI GCWGC 4 cut(s) 136, 243, 543, 754
Asp718I GGTACC 1 cut(s) 905
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 4 cut(s) 227, 254, 263, 591
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 2 cut(s) 193, 850
AvaII GGWCC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 65
BanI GGYRCC 2 cut(s) 60, 905
BanII GRGCYC 1 cut(s) 585
BbrPI CACGTG 1 cut(s) 918
BbsI GAAGAC 3 cut(s) 723, 809, 862
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 123, 255, 530, 766
BccI CCATC 6 cut(s) 163, 298, 673, 787, 835, 860
BceAI ACGGC 3 cut(s) 103, 523, 536
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciT130I CCWGG 2 cut(s) 199, 589
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 4 cut(s) 148, 425, 495, 528
BcuI ACTAGT 1 cut(s) 722
BfaI CTAG 2 cut(s) 516, 723
BfmI CTRYAG 2 cut(s) 24, 334
BglI GCCNNNNNGGC 2 cut(s) 261, 589
BglII AGATCT 4 cut(s) 314, 338, 371, 599
BisI GCNGC 9 cut(s) 137, 244, 511, 541, 544, 576, 755, 780, 783
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 9 cut(s) 138, 245, 512, 542, 545, 577, 756, 781, 784
Bme1390I CCNGG 3 cut(s) 199, 589, 790
Bme18I GGWCC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 695
BmgT120I GGNCC 4 cut(s) 227, 254, 263, 591
BmiI GGNNCC 3 cut(s) 62, 582, 907
BmrFI CCNGG 3 cut(s) 199, 589, 790
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 5 cut(s) 174, 290, 462, 663, 930
BmuI ACTGGG 1 cut(s) 251
BpiI GAAGAC 3 cut(s) 723, 809, 862
BplI GAGNNNNNCTC 2 cut(s) 844, 876
Bpu1102I GCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 913
BpuMI CCSGG 1 cut(s) 790
Bsa29I ATCGAT 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 918
BsaBI GATNNNNATC 1 cut(s) 343
BsaHI GRCGYC 1 cut(s) 489
BsaI GGTCTC 2 cut(s) 148, 425
BsaJI CCNNGG 2 cut(s) 435, 576
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 789, 866
Bse1I ACTGG 4 cut(s) 140, 214, 257, 774
Bse8I GATNNNNATC 1 cut(s) 343
BseBI CCWGG 2 cut(s) 199, 589
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 435, 576
BseGI GGATG 2 cut(s) 560, 798
BseJI GATNNNNATC 1 cut(s) 343
BseLI CCNNNNNNNGG 3 cut(s) 127, 789, 866
BseMII CTCAG 4 cut(s) 152, 287, 344, 359
BseNI ACTGG 4 cut(s) 140, 214, 257, 774
BseRI GAGGAG 2 cut(s) 463, 466
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 4 cut(s) 123, 255, 530, 766
BseYI CCCAGC 1 cut(s) 829
Bsh1236I CGCG 3 cut(s) 98, 423, 578
Bsh1285I CGRYCG 2 cut(s) 36, 385
BshFI GGCC 4 cut(s) 255, 264, 592, 878
BshNI GGYRCC 2 cut(s) 60, 905
BshVI ATCGAT 1 cut(s) 381
BsiEI CGRYCG 2 cut(s) 36, 385
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 2 cut(s) 36, 789
BslI CCNNNNNNNGG 3 cut(s) 127, 789, 866
BsmAI GTCTC 4 cut(s) 148, 425, 495, 528
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 4 cut(s) 255, 264, 592, 878
Bso31I GGTCTC 2 cut(s) 148, 425
Bsp1286I GDGCHC 3 cut(s) 65, 167, 585
Bsp1407I TGTACA 1 cut(s) 248
Bsp1720I GCTNAGC 1 cut(s) 161
BspACI CCGC 9 cut(s) 158, 187, 451, 510, 540, 576, 578, 780, 783
BspANI GGCC 4 cut(s) 255, 264, 592, 878
BspCNI CTCAG 4 cut(s) 153, 288, 345, 360
BspDI ATCGAT 1 cut(s) 381
BspFNI CGCG 3 cut(s) 98, 423, 578
BspLI GGNNCC 3 cut(s) 62, 582, 907
BspMAI CTGCAG 1 cut(s) 338
BspPI GGATC 3 cut(s) 153, 372, 639
BspT107I GGYRCC 2 cut(s) 60, 905
BspTNI GGTCTC 2 cut(s) 148, 425
BsrGI TGTACA 1 cut(s) 248
BsrI ACTGG 4 cut(s) 140, 214, 257, 774
BssECI CCNNGG 2 cut(s) 435, 576
BssNI GRCGYC 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 199, 589
Bst4CI ACNGT 3 cut(s) 25, 626, 730
BstACI GRCGYC 1 cut(s) 489
BstAUI TGTACA 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 918
BstC8I GCNNGC 2 cut(s) 398, 573
BstDEI CTNAG 6 cut(s) 161, 214, 296, 353, 368, 925
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 2 cut(s) 560, 798
BstFNI CGCG 3 cut(s) 98, 423, 578
BstHHI GCGC 1 cut(s) 402
BstMAI GTCTC 4 cut(s) 148, 425, 495, 528
BstMCI CGRYCG 2 cut(s) 36, 385
BstMWI GCNNNNNNNGC 6 cut(s) 252, 261, 393, 589, 751, 918
BstNI CCWGG 2 cut(s) 199, 589
BstSCI CCNGG 3 cut(s) 197, 587, 788
BstSFI CTRYAG 2 cut(s) 24, 334
BstSLI GKGCMC 1 cut(s) 65
BstUI CGCG 3 cut(s) 98, 423, 578
BstV1I GCAGC 4 cut(s) 123, 255, 530, 766
BstV2I GAAGAC 3 cut(s) 723, 809, 862
BstX2I RGATCY 6 cut(s) 314, 338, 364, 371, 599, 631
BstXI CCANNNNNNTGG 1 cut(s) 793
BstYI RGATCY 6 cut(s) 314, 338, 364, 371, 599, 631
Bsu15I ATCGAT 1 cut(s) 381
BsuRI GGCC 4 cut(s) 255, 264, 592, 878
BsuTUI ATCGAT 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 576
BtgZI GCGATG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 695
BtsCI GGATG 2 cut(s) 560, 798
BtsIMutI CAGTG 4 cut(s) 147, 207, 735, 781
Cac8I GCNNGC 2 cut(s) 398, 573
CfoI GCGC 1 cut(s) 402
Cfr13I GGNCC 4 cut(s) 227, 254, 263, 591
Cfr42I CCGCGG 1 cut(s) 579
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 3 cut(s) 104, 412, 429
Csp6I GTAC 3 cut(s) 249, 726, 906
CviAII CATG 3 cut(s) 485, 526, 661
CviQI GTAC 3 cut(s) 249, 726, 906
DdeI CTNAG 6 cut(s) 161, 214, 296, 353, 368, 925
EaeI YGGCCR 1 cut(s) 876
Eco24I GRGCYC 1 cut(s) 585
Eco31I GGTCTC 2 cut(s) 148, 425
Eco32I GATATC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 227
Eco72I CACGTG 1 cut(s) 918
EcoRII CCWGG 2 cut(s) 197, 587
EcoRV GATATC 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 585
FaeI CATG 3 cut(s) 488, 529, 664
FaiI YATR 8 cut(s) 195, 486, 527, 618, 662, 687, 851, 932
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 3 cut(s) 484, 525, 660
FauI CCCGC 1 cut(s) 180
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 9 cut(s) 137, 244, 511, 541, 544, 576, 755, 780, 783
FokI GGATG 2 cut(s) 547, 805
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 9 cut(s) 137, 244, 511, 541, 544, 576, 755, 780, 783
FspBI CTAG 2 cut(s) 516, 723
GlaI GCGC 1 cut(s) 401
GluI GCNGC 9 cut(s) 137, 244, 511, 541, 544, 576, 755, 780, 783
GsaI CCCAGC 1 cut(s) 833
HaeIII GGCC 4 cut(s) 255, 264, 592, 878
HapII CCGG 2 cut(s) 36, 789
HgaI GACGC 3 cut(s) 104, 412, 429
HhaI GCGC 1 cut(s) 402
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 3 cut(s) 488, 529, 664
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 3 cut(s) 344, 699, 870
HpaII CCGG 2 cut(s) 36, 789
HphI GGTGA 2 cut(s) 193, 850
Hpy166II GTNNAC 2 cut(s) 493, 698
Hpy188III TCNNGA 3 cut(s) 325, 516, 863
Hpy8I GTNNAC 2 cut(s) 493, 698
Hpy99I CGWCG 8 cut(s) 153, 364, 423, 428, 494, 497, 557, 626
HpyAV CCTTC 3 cut(s) 240, 434, 491
HpyCH4III ACNGT 3 cut(s) 25, 626, 730
HpyCH4IV ACGT 3 cut(s) 489, 694, 917
HpyCH4V TGCA 5 cut(s) 281, 336, 546, 670, 921
HpyF10VI GCNNNNNNNGC 6 cut(s) 252, 261, 393, 589, 751, 918
HpyF3I CTNAG 6 cut(s) 161, 214, 296, 353, 368, 925
HpySE526I ACGT 3 cut(s) 489, 694, 917
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 3 cut(s) 488, 529, 664
HspAI GCGC 1 cut(s) 400
KpnI GGTACC 1 cut(s) 909
KspI CCGCGG 1 cut(s) 579
LmnI GCTCC 2 cut(s) 580, 917
Lsp1109I GCAGC 4 cut(s) 123, 255, 530, 766
LweI GCATC 5 cut(s) 174, 290, 462, 663, 930
MaeI CTAG 2 cut(s) 516, 723
MaeII ACGT 3 cut(s) 489, 694, 917
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 9 cut(s) 53, 82, 448, 688, 728, 746, 811, 814, 867
MflI RGATCY 6 cut(s) 314, 338, 364, 371, 599, 631
MhlI GDGCHC 3 cut(s) 65, 167, 585
MluCI AATT 2 cut(s) 665, 768
MluI ACGCGT 2 cut(s) 96, 421
MlyI GAGTC 1 cut(s) 693
MmeI TCCRAC 3 cut(s) 131, 442, 504
MslI CAYNNNNRTG 3 cut(s) 170, 659, 791
MspA1I CMGCKG 3 cut(s) 160, 246, 578
MspI CCGG 2 cut(s) 36, 789
MspR9I CCNGG 3 cut(s) 199, 589, 790
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 2 cut(s) 199, 589
MvnI CGCG 3 cut(s) 98, 423, 578
MwoI GCNNNNNNNGC 6 cut(s) 252, 261, 393, 589, 751, 918
NciI CCSGG 1 cut(s) 790
NlaIII CATG 3 cut(s) 488, 529, 664
NlaIV GGNNCC 3 cut(s) 62, 582, 907
NmeAIII GCCGAG 1 cut(s) 681
NmuCI GTSAC 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 170
PcsI WCGNNNNNNNCGW 2 cut(s) 529, 708
PctI GAATGC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 344, 870
PkrI GCNGC 9 cut(s) 138, 245, 512, 542, 545, 577, 756, 781, 784
Ple19I CGATCG 1 cut(s) 385
PleI GAGTC 1 cut(s) 693
PmaCI CACGTG 1 cut(s) 918
PmlI CACGTG 1 cut(s) 918
PpsI GAGTC 1 cut(s) 693
Ppu21I YACGTR 1 cut(s) 918
Psp6I CCWGG 2 cut(s) 197, 587
PspCI CACGTG 1 cut(s) 918
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 2 cut(s) 197, 587
PspN4I GGNNCC 3 cut(s) 62, 582, 907
PspPI GGNCC 4 cut(s) 227, 254, 263, 591
PstI CTGCAG 1 cut(s) 338
PsuI RGATCY 6 cut(s) 314, 338, 364, 371, 599, 631
PvuI CGATCG 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 246
RsaI GTAC 3 cut(s) 250, 727, 907
RsaNI GTAC 3 cut(s) 249, 726, 906
RseI CAYNNNNRTG 3 cut(s) 170, 659, 791
SacII CCGCGG 1 cut(s) 579
SalI GTCGAC 1 cut(s) 491
SatI GCNGC 9 cut(s) 137, 244, 511, 541, 544, 576, 755, 780, 783
Sau96I GGNCC 4 cut(s) 227, 254, 263, 591
SchI GAGTC 1 cut(s) 693
ScrFI CCNGG 3 cut(s) 199, 589, 790
SduI GDGCHC 3 cut(s) 65, 167, 585
SfaNI GCATC 5 cut(s) 174, 290, 462, 663, 930
SfcI CTRYAG 2 cut(s) 24, 334
SfiI GGCCNNNNNGGCC 1 cut(s) 261
Sfr303I CCGCGG 1 cut(s) 579
SgrBI CCGCGG 1 cut(s) 579
SgrDI CGTCGACG 1 cut(s) 491
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 3 cut(s) 170, 659, 791
SmlI CTYRAG 1 cut(s) 892
SmoI CTYRAG 1 cut(s) 892
SpeI ACTAGT 1 cut(s) 722
Sse9I AATT 2 cut(s) 665, 768
SsiI CCGC 9 cut(s) 158, 187, 451, 510, 540, 576, 578, 780, 783
SspMI CTAG 2 cut(s) 516, 723
StyD4I CCNGG 3 cut(s) 197, 587, 788
TaaI ACNGT 3 cut(s) 25, 626, 730
TaiI ACGT 3 cut(s) 492, 697, 920
TaqI TCGA 5 cut(s) 324, 359, 381, 492, 822
TasI AATT 2 cut(s) 665, 768
TatI WGTACW 2 cut(s) 248, 725
TauI GCSGC 5 cut(s) 513, 543, 578, 782, 785
TfiI GAWTC 2 cut(s) 344, 870
TscAI CASTG 4 cut(s) 147, 214, 735, 781
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 4 cut(s) 136, 243, 543, 754
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 549, 677, 689
TspGWI ACGGA 3 cut(s) 143, 377, 705
TspRI CASTG 4 cut(s) 147, 214, 735, 781
VpaK11BI GGWCC 1 cut(s) 227
XbaI TCTAGA 1 cut(s) 515
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 2 cut(s) 516, 723
ZraI GACGTC 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.