Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011089.1

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

1738 .. 2184

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011089.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgaaattgcagatgaagatgggatataacggacgtggactcggcaaaaacgaggaaggtattgaagccgaattgaggtccaaaaatgaaggtcttaagcaggggactaagctgcggcggcggcccacatcgtttgtgaaagccaaggtggtgcacaaaactgtcgctgctggtgacaaggatcacaagaagagcaaaacagaaataaccaaaaaaccaagcagcctagacactaggacagtggaagaacacaagcccaacgagcagcctaatgaggcaattaccagtgccgccgccaccgggatggagaagaagacgattaccaaaggtgtcgatttgctgggaaaggtgatggctgatatgagaagacctcttgatggaatcttggccgactttgagaacttgagtttgaaaggtaccagctccacgtgcatcttagctatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.22

Weight (kDa)

9.77

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	416
AciI	CCGC	5 cut(s)	115, 118, 121, 291, 294
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	387
AcvI	CACGTG	1 cut(s)	429
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	3 cut(s)	75, 300, 377
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	65, 412
AjiI	CACGTC	1 cut(s)	35
AluBI	AGCT	3 cut(s)	112, 423, 440
AluI	AGCT	3 cut(s)	112, 423, 440
Alw21I	GWGCWC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	122, 387
ApaLI	GTGCAC	1 cut(s)	152
ApeKI	GCWGC	4 cut(s)	112, 167, 222, 265
Asp718I	GGTACC	1 cut(s)	416
AspS9I	GGNCC	2 cut(s)	78, 123
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	185, 361
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	416
BbrPI	CACGTG	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	320, 373
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	99, 154, 234, 277
BccI	CCATC	4 cut(s)	13, 298, 346, 371
BcnI	CCSGG	1 cut(s)	301
BfaI	CTAG	2 cut(s)	227, 234
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	9 cut(s)	113, 116, 119, 122, 168, 223, 266, 291, 294
BlsI	GCNGC	9 cut(s)	114, 117, 120, 123, 169, 224, 267, 292, 295
Bme1390I	CCNGG	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	78
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	78, 123
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	441
BpiI	GAAGAC	2 cut(s)	320, 373
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpuEI	CTTGAG	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 300, 377
Bse1I	ACTGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	75, 300, 377
BseNI	ACTGG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	99, 154, 234, 277
BseYI	CCCAGC	1 cut(s)	340
BshFI	GGCC	2 cut(s)	124, 389
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	3 cut(s)	75, 300, 377
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	124, 389
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	5 cut(s)	115, 118, 121, 291, 294
BspANI	GGCC	2 cut(s)	124, 389
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	416
BspTI	CTTAAG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	163, 241
Bst6I	CTCTTC	1 cut(s)	185
BstAFI	CTTAAG	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	108, 436
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 121, 262, 429
BstSCI	CCNGG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	99, 154, 234, 277
BstV2I	GAAGAC	2 cut(s)	320, 373
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	124, 389
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	246, 292
Cfr13I	GGNCC	2 cut(s)	78, 123
Csp6I	GTAC	1 cut(s)	417
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	2 cut(s)	108, 436
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	78
Eco72I	CACGTG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaiI	YATR	3 cut(s)	27, 362, 443
FaqI	GGGAC	1 cut(s)	118
Fnu4HI	GCNGC	9 cut(s)	113, 116, 119, 122, 168, 223, 266, 291, 294
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	9 cut(s)	113, 116, 119, 122, 168, 223, 266, 291, 294
FspBI	CTAG	2 cut(s)	227, 234
GluI	GCNGC	9 cut(s)	113, 116, 119, 122, 168, 223, 266, 291, 294
GsaI	CCCAGC	1 cut(s)	344
HaeIII	GGCC	2 cut(s)	124, 389
HapII	CCGG	1 cut(s)	300
HinfI	GANTC	2 cut(s)	39, 381
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	2 cut(s)	185, 361
Hpy166II	GTNNAC	2 cut(s)	38, 154
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	38, 154
HpyAV	CCTTC	2 cut(s)	50, 83
HpyCH4III	ACNGT	2 cut(s)	163, 241
HpyCH4IV	ACGT	2 cut(s)	34, 428
HpyCH4V	TGCA	3 cut(s)	10, 154, 432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 121, 262, 429
HpyF3I	CTNAG	2 cut(s)	108, 436
HpySE526I	ACGT	2 cut(s)	34, 428
KpnI	GGTACC	1 cut(s)	420
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	6 cut(s)	86, 156, 298, 313, 326, 433
Lsp1109I	GCAGC	4 cut(s)	99, 154, 234, 277
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	227, 234
MaeII	ACGT	2 cut(s)	34, 428
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	6 cut(s)	28, 202, 257, 322, 325, 378
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	5, 71, 279
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	46, 69, 268, 381
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	118, 121, 262, 429
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	418
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	381
PkrI	GCNGC	9 cut(s)	114, 117, 120, 123, 169, 224, 267, 292, 295
PleI	GAGTC	1 cut(s)	33
PmaCI	CACGTG	1 cut(s)	429
PmlI	CACGTG	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	33
Ppu21I	YACGTR	1 cut(s)	429
PspCI	CACGTG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	78, 123
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	9 cut(s)	113, 116, 119, 122, 168, 223, 266, 291, 294
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	2 cut(s)	78, 123
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	441
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	95, 403
SmoI	CTYRAG	2 cut(s)	95, 403
Sse9I	AATT	3 cut(s)	5, 71, 279
SsiI	CCGC	5 cut(s)	115, 118, 121, 291, 294
SspMI	CTAG	2 cut(s)	227, 234
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	163, 241
TaiI	ACGT	2 cut(s)	37, 431
TaqI	TCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	5, 71, 279
TauI	GCSGC	5 cut(s)	118, 121, 124, 293, 296
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	246, 292
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	4 cut(s)	112, 167, 222, 265
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	17, 29, 102
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	246, 292
Vha464I	CTTAAG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	78
XspI	CTAG	2 cut(s)	227, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.