RLG00000008133

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
26052946 .. 26053876
931 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008133

Sequence Viewer

Length: 852 bp
ATGGATTTGAGATCTGAAATCGAGAGGCTCCGCAGATCTGAATCTGGTCTGAGATCGATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGGACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGTTCTCGCTTTCTCCTCCTCCGACCACGACGTCGACGAAGGAGACAACGGCGGCTCTAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCCACAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTGTAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGCAGGGGACTAAGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGATACTAGTGCAGTGGAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGGCGAGTACAAAAGGCGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTAGCCGACTTTGAGAATTTGAGTTTGATAGACAACAGCTCCAGTGCAAAAGGTCCGACATGTGGACTTCGAAATTTTGAAGTGTAA

Protein Analysis

284

Amino Acids

31.34

Weight (kDa)

9.41

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AatII GACGTC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 120, 237, 275
AclWI GGATC 2 cut(s) 291, 336
AcsI RAATTY 2 cut(s) 781, 838
AcyI GRCGYC 2 cut(s) 186, 711
AfaI GTAC 1 cut(s) 703
AfiI CCNNNNNNNGG 4 cut(s) 447, 687, 758, 827
AflIII ACRYGT 2 cut(s) 118, 824
AgsI TTSAA 2 cut(s) 437, 845
AhlI ACTAGT 1 cut(s) 620
AjiI CACGTC 1 cut(s) 407
AleI CACNNNNGTG 1 cut(s) 546
AluBI AGCT 3 cut(s) 268, 496, 804
AluI AGCT 3 cut(s) 268, 496, 804
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 3 cut(s) 122, 192, 225
Alw44I GTGCAC 1 cut(s) 539
AlwI GGATC 2 cut(s) 291, 336
AoxI GGCC 2 cut(s) 287, 506
ApaLI GTGCAC 1 cut(s) 539
ApeKI GCWGC 5 cut(s) 240, 496, 554, 609, 652
ApoI RAATTY 2 cut(s) 781, 838
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 4 cut(s) 288, 450, 507, 818
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 2 cut(s) 572, 742
AsuII TTCGAA 1 cut(s) 835
AvaII GGWCC 2 cut(s) 450, 818
BaeGI GKGCMC 1 cut(s) 543
BanII GRGCYC 1 cut(s) 282
BauI CACGAG 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 754
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 5 cut(s) 227, 483, 541, 621, 664
BccI CCATC 5 cut(s) 52, 385, 679, 727, 752
BceAI ACGGC 3 cut(s) 220, 233, 287
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 682
BcoDI GTCTC 3 cut(s) 122, 192, 225
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 3 cut(s) 213, 614, 621
BglI GCCNNNNNGGC 1 cut(s) 286
BglII AGATCT 3 cut(s) 11, 35, 68
Bme1390I CCNGG 1 cut(s) 682
Bme18I GGWCC 2 cut(s) 450, 818
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 4 cut(s) 288, 450, 507, 818
BmiI GGNNCC 2 cut(s) 29, 279
BmrFI CCNGG 1 cut(s) 682
BmsI GCATC 2 cut(s) 159, 375
BpiI GAAGAC 1 cut(s) 754
BplI GAGNNNNNCTC 2 cut(s) 736, 768
BpmI CTGGAG 1 cut(s) 790
Bpu14I TTCGAA 1 cut(s) 835
BpuMI CCSGG 1 cut(s) 682
Bsa29I ATCGAT 2 cut(s) 56, 78
BsaBI GATNNNNATC 1 cut(s) 40
BsaHI GRCGYC 2 cut(s) 186, 711
BsaI GGTCTC 2 cut(s) 122, 225
BsaJI CCNNGG 4 cut(s) 132, 235, 273, 528
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 4 cut(s) 447, 687, 758, 827
Bse1I ACTGG 2 cut(s) 672, 807
Bse8I GATNNNNATC 1 cut(s) 40
BseCI ATCGAT 2 cut(s) 56, 78
BseDI CCNNGG 4 cut(s) 132, 235, 273, 528
BseGI GGATG 2 cut(s) 257, 690
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 4 cut(s) 447, 687, 758, 827
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 672, 807
BseRI GAGGAG 2 cut(s) 160, 163
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 5 cut(s) 227, 483, 541, 621, 664
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 3 cut(s) 120, 237, 275
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 289, 508
BshVI ATCGAT 2 cut(s) 56, 78
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 1 cut(s) 681
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 4 cut(s) 447, 687, 758, 827
BsmAI GTCTC 3 cut(s) 122, 192, 225
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 2 cut(s) 289, 508
Bso31I GGTCTC 2 cut(s) 122, 225
Bsp119I TTCGAA 1 cut(s) 835
Bsp1286I GDGCHC 2 cut(s) 282, 543
Bsp143I GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 568
BspANI GGCC 2 cut(s) 289, 508
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 2 cut(s) 56, 78
BspFNI CGCG 3 cut(s) 120, 237, 275
BspLI GGNNCC 2 cut(s) 29, 279
BspPI GGATC 2 cut(s) 291, 336
BspQI GCTCTTC 1 cut(s) 572
BspT104I TTCGAA 1 cut(s) 835
BspTNI GGTCTC 2 cut(s) 122, 225
BsrI ACTGG 2 cut(s) 672, 807
BssECI CCNNGG 4 cut(s) 132, 235, 273, 528
BssMI GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 568
BssNI GRCGYC 2 cut(s) 186, 711
BssSI CACGAG 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 572
BstACI GRCGYC 2 cut(s) 186, 711
BstBI TTCGAA 1 cut(s) 835
BstC8I GCNNGC 2 cut(s) 95, 270
BstDEI CTNAG 3 cut(s) 50, 492, 766
BstDSI CCRYGG 2 cut(s) 235, 273
BstF5I GGATG 2 cut(s) 257, 690
BstFNI CGCG 3 cut(s) 120, 237, 275
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 8 cut(s) 14, 38, 56, 71, 82, 299, 331, 571
BstMAI GTCTC 3 cut(s) 122, 192, 225
BstMBI GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 568
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 90, 286, 502, 505, 649
BstNSI RCATGY 1 cut(s) 828
BstSCI CCNGG 1 cut(s) 680
BstSLI GKGCMC 1 cut(s) 543
BstUI CGCG 3 cut(s) 120, 237, 275
BstV1I GCAGC 5 cut(s) 227, 483, 541, 621, 664
BstV2I GAAGAC 1 cut(s) 754
BstX2I RGATCY 5 cut(s) 11, 35, 68, 296, 328
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 5 cut(s) 11, 35, 68, 296, 328
Bsu15I ATCGAT 2 cut(s) 56, 78
BsuRI GGCC 2 cut(s) 289, 508
BsuTUI ATCGAT 2 cut(s) 56, 78
BtgI CCRYGG 2 cut(s) 235, 273
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 2 cut(s) 257, 690
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 3 cut(s) 633, 679, 814
Cac8I GCNNGC 2 cut(s) 95, 270
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 4 cut(s) 288, 450, 507, 818
Cfr42I CCGCGG 2 cut(s) 238, 276
ClaI ATCGAT 2 cut(s) 56, 78
CseI GACGC 3 cut(s) 109, 126, 700
Csp6I GTAC 1 cut(s) 702
CspCI CAANNNNNGTGG 2 cut(s) 499, 534
CviAII CATG 3 cut(s) 223, 373, 825
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 3 cut(s) 50, 492, 766
DpnI GATC 8 cut(s) 13, 37, 55, 70, 81, 298, 330, 570
DpnII GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 568
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
EciI GGCGGA 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 2 cut(s) 122, 225
Eco47I GGWCC 2 cut(s) 450, 818
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 3 cut(s) 226, 376, 828
FaiI YATR 5 cut(s) 224, 315, 374, 743, 826
FaqI GGGAC 1 cut(s) 502
FatI CATG 3 cut(s) 222, 372, 824
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 189
FokI GGATG 2 cut(s) 244, 697
FriOI GRGCYC 1 cut(s) 282
FspBI CTAG 3 cut(s) 213, 614, 621
GlaI GCGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 790
HaeIII GGCC 2 cut(s) 289, 508
HapII CCGG 1 cut(s) 681
HgaI GACGC 3 cut(s) 109, 126, 700
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 2 cut(s) 186, 711
Hin1II CATG 3 cut(s) 226, 376, 828
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 3 cut(s) 41, 411, 762
HpaII CCGG 1 cut(s) 681
HphI GGTGA 2 cut(s) 572, 742
Hpy166II GTNNAC 4 cut(s) 190, 410, 541, 830
Hpy188III TCNNGA 4 cut(s) 22, 213, 349, 755
Hpy8I GTNNAC 4 cut(s) 190, 410, 541, 830
Hpy99I CGWCG 8 cut(s) 120, 125, 188, 191, 194, 254, 323, 716
HpyAV CCTTC 5 cut(s) 131, 188, 422, 455, 688
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 2 cut(s) 186, 406
HpyCH4V TGCA 5 cut(s) 243, 382, 541, 626, 812
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 286, 502, 505, 649
HpyF3I CTNAG 3 cut(s) 50, 492, 766
HpySE526I ACGT 2 cut(s) 186, 406
Hsp92I GRCGYC 2 cut(s) 186, 711
Hsp92II CATG 3 cut(s) 226, 376, 828
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 568
KspI CCGCGG 2 cut(s) 238, 276
Kzo9I GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 568
LguI GCTCTTC 1 cut(s) 572
LmnI GCTCC 3 cut(s) 33, 277, 809
LpnPI CCDG 8 cut(s) 30, 271, 470, 543, 685, 694, 707, 820
Lsp1109I GCAGC 5 cut(s) 227, 483, 541, 621, 664
LweI GCATC 2 cut(s) 159, 375
MaeI CTAG 3 cut(s) 213, 614, 621
MaeII ACGT 2 cut(s) 186, 406
MaeIII GTNAC 2 cut(s) 398, 560
MalI GATC 8 cut(s) 13, 37, 55, 70, 81, 298, 330, 570
MboI GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 568
MboII GAAGA 6 cut(s) 145, 400, 589, 644, 703, 759
MflI RGATCY 5 cut(s) 11, 35, 68, 296, 328
MhlI GDGCHC 2 cut(s) 282, 543
MluCI AATT 5 cut(s) 377, 443, 666, 781, 838
MluI ACGCGT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 3 cut(s) 139, 201, 845
MslI CAYNNNNRTG 2 cut(s) 371, 546
MspA1I CMGCKG 2 cut(s) 237, 275
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 1 cut(s) 682
MvnI CGCG 3 cut(s) 120, 237, 275
MwoI GCNNNNNNNGC 5 cut(s) 90, 286, 502, 505, 649
NciI CCSGG 1 cut(s) 682
NdeII GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 568
NlaIII CATG 3 cut(s) 226, 376, 828
NlaIV GGNNCC 2 cut(s) 29, 279
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 560
NspI RCATGY 1 cut(s) 828
NspV TTCGAA 1 cut(s) 835
OliI CACNNNNGTG 1 cut(s) 546
PciI ACATGT 1 cut(s) 824
PciSI GCTCTTC 1 cut(s) 572
PcsI WCGNNNNNNNCGW 3 cut(s) 189, 226, 420
PfeI GAWTC 2 cut(s) 41, 762
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PscI ACATGT 1 cut(s) 824
PspN4I GGNNCC 2 cut(s) 29, 279
PspPI GGNCC 4 cut(s) 288, 450, 507, 818
PsuI RGATCY 5 cut(s) 11, 35, 68, 296, 328
PvuI CGATCG 1 cut(s) 82
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
RseI CAYNNNNRTG 2 cut(s) 371, 546
SacII CCGCGG 2 cut(s) 238, 276
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 572
Sau3AI GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 568
Sau96I GGNCC 4 cut(s) 288, 450, 507, 818
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 682
SduI GDGCHC 2 cut(s) 282, 543
SfaNI GCATC 2 cut(s) 159, 375
Sfr303I CCGCGG 2 cut(s) 238, 276
SfuI TTCGAA 1 cut(s) 835
SgrBI CCGCGG 2 cut(s) 238, 276
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 2 cut(s) 450, 818
SmiMI CAYNNNNRTG 2 cut(s) 371, 546
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 5 cut(s) 377, 443, 666, 781, 838
SspI AATATT 1 cut(s) 337
SspMI CTAG 3 cut(s) 213, 614, 621
StyD4I CCNGG 1 cut(s) 680
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 2 cut(s) 189, 409
TaqI TCGA 7 cut(s) 21, 56, 78, 189, 348, 714, 835
TasI AATT 5 cut(s) 377, 443, 666, 781, 838
TatI WGTACW 1 cut(s) 701
TauI GCSGC 7 cut(s) 210, 240, 275, 502, 505, 508, 680
TfiI GAWTC 2 cut(s) 41, 762
TscAI CASTG 3 cut(s) 633, 679, 814
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 5 cut(s) 240, 496, 554, 609, 652
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 4 cut(s) 246, 389, 401, 474
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 3 cut(s) 633, 679, 814
VneI GTGCAC 1 cut(s) 539
VpaK11BI GGWCC 2 cut(s) 450, 818
XapI RAATTY 2 cut(s) 781, 838
XbaI TCTAGA 1 cut(s) 212
XceI RCATGY 1 cut(s) 828
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 3 cut(s) 213, 614, 621
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.