Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

38529232 .. 38530050

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATTTGAGATCTGAAATTGAGAGGCTCTGCAGATCTGAATCTGGTCTGAGATCGATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGGACAATCTCCGACGCGTCGTTCAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTTCTCCTCCTCCGACGAAGGAGACAACGGCGGCTCTAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCAGTCAGATCCGCCGTGAAACCCTATGAGGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGCAGGGGACTAAGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAATAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACCGAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGCATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGGTGCCAGCTCCAGGTGCATCTTAGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

272

Amino Acids

30.06

Weight (kDa)

9.64

Isoelectric Point (pI)

60.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	116 - 153	5.6e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	788
AccII	CGCG	3 cut(s)	120, 225, 263
AclWI	GGATC	2 cut(s)	279, 324
AcoI	YGGCCR	1 cut(s)	759
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	3 cut(s)	435, 749, 798
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	425, 784
AhlI	ACTAGT	1 cut(s)	605
AjiI	CACGTC	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	272, 797
AleI	CACNNNNGTG	1 cut(s)	531
AluBI	AGCT	4 cut(s)	256, 484, 795, 812
AluI	AGCT	4 cut(s)	256, 484, 795, 812
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	180, 213
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	2 cut(s)	279, 324
AoxI	GGCC	3 cut(s)	275, 494, 759
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	5 cut(s)	228, 484, 539, 594, 637
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	438, 495
AsuHPI	GGTGA	2 cut(s)	557, 733
AvaII	GGWCC	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	346
BbsI	GAAGAC	2 cut(s)	692, 745
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	5 cut(s)	215, 471, 526, 606, 649
BccI	CCATC	4 cut(s)	52, 373, 718, 743
BceAI	ACGGC	3 cut(s)	208, 221, 275
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	2 cut(s)	274, 799
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	180, 213
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	3 cut(s)	201, 599, 606
BfmI	CTRYAG	1 cut(s)	31
BglI	GCCNNNNNGGC	1 cut(s)	274
BglII	AGATCT	3 cut(s)	11, 35, 68
Bme1390I	CCNGG	2 cut(s)	274, 799
Bme18I	GGWCC	1 cut(s)	438
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	438, 495
BmiI	GGNNCC	2 cut(s)	267, 790
BmrFI	CCNGG	2 cut(s)	274, 799
BmsI	GCATC	3 cut(s)	159, 363, 813
BpiI	GAAGAC	2 cut(s)	692, 745
BplI	GAGNNNNNCTC	2 cut(s)	727, 759
BpmI	CTGGAG	1 cut(s)	781
BpuEI	CTTGAG	1 cut(s)	796
Bsa29I	ATCGAT	2 cut(s)	56, 78
BsaBI	GATNNNNATC	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	132, 223, 261, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	435, 749, 798
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	278, 657
Bse8I	GATNNNNATC	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	274, 799
BseCI	ATCGAT	2 cut(s)	56, 78
BseDI	CCNNGG	4 cut(s)	132, 223, 261, 516
BseGI	GGATG	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	40
BseLI	CCNNNNNNNGG	3 cut(s)	435, 749, 798
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	278, 657
BseRI	GAGGAG	2 cut(s)	160, 163
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	5 cut(s)	215, 471, 526, 606, 649
BseYI	CCCAGC	1 cut(s)	712
Bsh1236I	CGCG	3 cut(s)	120, 225, 263
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	277, 496, 761
BshNI	GGYRCC	1 cut(s)	788
BshVI	ATCGAT	2 cut(s)	56, 78
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	3 cut(s)	435, 749, 798
BsmAI	GTCTC	2 cut(s)	180, 213
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	277, 496, 761
Bso31I	GGTCTC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	270, 528
Bsp143I	GATC	8 cut(s)	11, 35, 53, 68, 79, 284, 316, 553
BspANI	GGCC	3 cut(s)	277, 496, 761
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	2 cut(s)	56, 78
BspFNI	CGCG	3 cut(s)	120, 225, 263
BspLI	GGNNCC	2 cut(s)	267, 790
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	2 cut(s)	279, 324
BspT107I	GGYRCC	1 cut(s)	788
BspTNI	GGTCTC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	2 cut(s)	278, 657
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	4 cut(s)	132, 223, 261, 516
BssMI	GATC	8 cut(s)	11, 35, 53, 68, 79, 284, 316, 553
BssSI	CACGAG	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	2 cut(s)	274, 799
Bst4CI	ACNGT	2 cut(s)	311, 613
BstC8I	GCNNGC	3 cut(s)	95, 258, 793
BstDEI	CTNAG	3 cut(s)	50, 480, 808
BstDSI	CCRYGG	2 cut(s)	223, 261
BstF5I	GGATG	1 cut(s)	245
BstFNI	CGCG	3 cut(s)	120, 225, 263
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	8 cut(s)	14, 38, 56, 71, 82, 287, 319, 556
BstMAI	GTCTC	2 cut(s)	180, 213
BstMBI	GATC	8 cut(s)	11, 35, 53, 68, 79, 284, 316, 553
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 274, 490, 493, 634, 801
BstNI	CCWGG	2 cut(s)	274, 799
BstSCI	CCNGG	2 cut(s)	272, 797
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	528
BstUI	CGCG	3 cut(s)	120, 225, 263
BstV1I	GCAGC	5 cut(s)	215, 471, 526, 606, 649
BstV2I	GAAGAC	2 cut(s)	692, 745
BstX2I	RGATCY	5 cut(s)	11, 35, 68, 284, 316
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	5 cut(s)	11, 35, 68, 284, 316
Bsu15I	ATCGAT	2 cut(s)	56, 78
BsuRI	GGCC	3 cut(s)	277, 496, 761
BsuTUI	ATCGAT	2 cut(s)	56, 78
BtgI	CCRYGG	2 cut(s)	223, 261
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	618, 664
Cac8I	GCNNGC	3 cut(s)	95, 258, 793
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	438, 495
Cfr42I	CCGCGG	2 cut(s)	226, 264
ClaI	ATCGAT	2 cut(s)	56, 78
CseI	GACGC	2 cut(s)	109, 126
Csp6I	GTAC	1 cut(s)	609
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	3 cut(s)	211, 361, 676
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	3 cut(s)	50, 480, 808
DpnI	GATC	8 cut(s)	13, 37, 55, 70, 81, 286, 318, 555
DpnII	GATC	8 cut(s)	11, 35, 53, 68, 79, 284, 316, 553
EaeI	YGGCCR	1 cut(s)	759
EciI	GGCGGA	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	272, 797
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	3 cut(s)	214, 364, 679
FaiI	YATR	7 cut(s)	212, 303, 362, 387, 677, 734, 815
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	3 cut(s)	210, 360, 675
FbaI	TGATCA	1 cut(s)	553
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	270
FspBI	CTAG	3 cut(s)	201, 599, 606
GlaI	GCGC	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	716
GsuI	CTGGAG	1 cut(s)	781
HaeIII	GGCC	3 cut(s)	277, 496, 761
HapII	CCGG	1 cut(s)	672
HgaI	GACGC	2 cut(s)	109, 126
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	214, 364, 679
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	41, 399, 753
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	2 cut(s)	557, 733
Hpy166II	GTNNAC	2 cut(s)	398, 526
Hpy188III	TCNNGA	3 cut(s)	201, 337, 746
Hpy8I	GTNNAC	2 cut(s)	398, 526
Hpy99I	CGWCG	4 cut(s)	120, 125, 182, 242
HpyAV	CCTTC	4 cut(s)	131, 176, 410, 443
HpyCH4III	ACNGT	2 cut(s)	311, 613
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	5 cut(s)	33, 231, 370, 526, 804
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 274, 490, 493, 634, 801
HpyF3I	CTNAG	3 cut(s)	50, 480, 808
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	214, 364, 679
HspAI	GCGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	553
KspI	CCGCGG	2 cut(s)	226, 264
Kzo9I	GATC	8 cut(s)	11, 35, 53, 68, 79, 284, 316, 553
LmnI	GCTCC	2 cut(s)	265, 800
Lsp1109I	GCAGC	5 cut(s)	215, 471, 526, 606, 649
LweI	GCATC	3 cut(s)	159, 363, 813
MaeI	CTAG	3 cut(s)	201, 599, 606
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	8 cut(s)	13, 37, 55, 70, 81, 286, 318, 555
MboI	GATC	8 cut(s)	11, 35, 53, 68, 79, 284, 316, 553
MboII	GAAGA	6 cut(s)	145, 388, 629, 694, 697, 750
MflI	RGATCY	5 cut(s)	11, 35, 68, 284, 316
MhlI	GDGCHC	2 cut(s)	270, 528
MluCI	AATT	4 cut(s)	18, 365, 431, 651
MluI	ACGCGT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	393
MmeI	TCCRAC	2 cut(s)	139, 201
MslI	CAYNNNNRTG	3 cut(s)	359, 531, 674
MspA1I	CMGCKG	2 cut(s)	225, 263
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	2 cut(s)	274, 799
MvaI	CCWGG	2 cut(s)	274, 799
MvnI	CGCG	3 cut(s)	120, 225, 263
MwoI	GCNNNNNNNGC	6 cut(s)	90, 274, 490, 493, 634, 801
NdeII	GATC	8 cut(s)	11, 35, 53, 68, 79, 284, 316, 553
NlaIII	CATG	3 cut(s)	214, 364, 679
NlaIV	GGNNCC	2 cut(s)	267, 790
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	545
OliI	CACNNNNGTG	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	2 cut(s)	214, 408
PfeI	GAWTC	2 cut(s)	41, 753
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	272, 797
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	2 cut(s)	272, 797
PspN4I	GGNNCC	2 cut(s)	267, 790
PspPI	GGNCC	2 cut(s)	438, 495
PstI	CTGCAG	1 cut(s)	35
PsuI	RGATCY	5 cut(s)	11, 35, 68, 284, 316
PvuI	CGATCG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	3 cut(s)	359, 531, 674
SacII	CCGCGG	2 cut(s)	226, 264
Sau3AI	GATC	8 cut(s)	11, 35, 53, 68, 79, 284, 316, 553
Sau96I	GGNCC	2 cut(s)	438, 495
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	2 cut(s)	274, 799
SduI	GDGCHC	2 cut(s)	270, 528
SfaNI	GCATC	3 cut(s)	159, 363, 813
SfcI	CTRYAG	1 cut(s)	31
Sfr303I	CCGCGG	2 cut(s)	226, 264
SgrBI	CCGCGG	2 cut(s)	226, 264
SinI	GGWCC	1 cut(s)	438
SmiMI	CAYNNNNRTG	3 cut(s)	359, 531, 674
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
SpeI	ACTAGT	1 cut(s)	605
Sse9I	AATT	4 cut(s)	18, 365, 431, 651
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	3 cut(s)	201, 599, 606
StyD4I	CCNGG	2 cut(s)	272, 797
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	311, 613
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	4 cut(s)	56, 78, 336, 705
TasI	AATT	4 cut(s)	18, 365, 431, 651
TatI	WGTACW	1 cut(s)	608
TauI	GCSGC	8 cut(s)	198, 228, 263, 490, 493, 496, 665, 668
TfiI	GAWTC	2 cut(s)	41, 753
TscAI	CASTG	2 cut(s)	618, 664
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	5 cut(s)	228, 484, 539, 594, 637
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	4 cut(s)	234, 377, 389, 462
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	2 cut(s)	618, 664
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	438
XbaI	TCTAGA	1 cut(s)	200
XspI	CTAG	3 cut(s)	201, 599, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.