Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012211.1

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

17064 .. 21016

Gene Structure 3953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012211.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atggatttgaggtctgaaatcgatctctgttctcgcaagcgcaaggagagcaatctccgacgcgtcgttgagacctcggaaggaaatctccgcatcttcgctctcgcttcctcctcctccgaccaccacgacgacgacaacggagacaacggcggctccagaaaacgcatgaggcgagaccgcggctgcaacgccgtcgtttcatccaccaagctcgccgtggagcccaccagacccgtcaggtccgccgtgaaaccctatgaggacggtggggatctgaatattggggagttcgagaaacacacaaagggcatcggcatgaaattgctgatgaagatgggctataacggaggcggactggggaagaacgagaaaggtattgtgagcccaattgaagccgaattgaggcccaaaaatgaaggtcttggttttgattacaaggaggggactaagctgcggcggcgtcccacatcgtttgtgaaagccaaggcggtgcagaaaagtgtgggtaatggtgacaaagatcacaagaagaccaaaacagaaatagccaaaaagccaagcagcctaaacactagtacagtggaaggacacaagcccaacgagcagcctaatgaggcaattaccagtgccgccgggatggggaagaagacgagtaaaaaaggtgtcgatttgctggaaaaggtgatggctgatatgagaagacctcttgatggaatcttggccgaccttgagaatttgagtttgaaagatacaacctccagaagaagaagggtaaatctagagaggaagaagggatggtcttggttgattggattgattgagcttcagaatagcctcactgcattgctcacttatgatcctgagatatatccacaagggtccaagagccttgaacccagtcaagctgaagaagatgaagcagcagccaaagatggatatggtgcctctgagactaacaaggcatcagcagcaatgtgcgtcggaataggcagcttctctgactctatggaagcacaggggcctgcacactttcttgaacaaattctcttcatggggagtacaaagtttctggttgaaaatgaggtctgcttgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

366

Amino Acids

40.14

Weight (kDa)

9.02

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	944
AccII	CGCG	2 cut(s)	63, 183
AclWI	GGATC	2 cut(s)	282, 854
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	2 cut(s)	736, 1044
AcuI	CTGAAG	2 cut(s)	812, 930
AcyI	GRCGYC	1 cut(s)	463
AfaI	GTAC	2 cut(s)	580, 1063
AfiI	CCNNNNNNNGG	3 cut(s)	405, 642, 713
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	395, 748, 896, 1040, 1079
AhlI	ACTAGT	1 cut(s)	575
AluBI	AGCT	5 cut(s)	214, 454, 826, 908, 996
AluI	AGCT	5 cut(s)	214, 454, 826, 908, 996
Alw26I	GTCTC	4 cut(s)	65, 138, 171, 947
AlwI	GGATC	2 cut(s)	282, 854
AoxI	GGCC	3 cut(s)	407, 723, 1022
ApeKI	GCWGC	8 cut(s)	186, 454, 564, 607, 923, 926, 971, 993
ApoI	RAATTY	2 cut(s)	736, 1044
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	4 cut(s)	243, 408, 882, 1022
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	2 cut(s)	527, 697
AvaII	GGWCC	2 cut(s)	243, 882
BanI	GGYRCC	1 cut(s)	944
BanII	GRGCYC	2 cut(s)	228, 389
BbsI	GAAGAC	3 cut(s)	539, 656, 709
BbvI	GCAGC	8 cut(s)	173, 441, 576, 619, 935, 938, 983, 1005
BccI	CCATC	6 cut(s)	331, 634, 682, 707, 792, 929
BceAI	ACGGC	4 cut(s)	166, 179, 203, 233
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	4 cut(s)	65, 138, 171, 947
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	2 cut(s)	576, 782
Bme1390I	CCNGG	1 cut(s)	637
Bme18I	GGWCC	2 cut(s)	243, 882
BmgT120I	GGNCC	4 cut(s)	243, 408, 882, 1022
BmiI	GGNNCC	5 cut(s)	157, 225, 883, 946, 1023
BmrFI	CCNGG	1 cut(s)	637
BmrI	ACTGGG	2 cut(s)	368, 894
BmsI	GCATC	3 cut(s)	102, 321, 974
BmuI	ACTGGG	2 cut(s)	368, 894
BpiI	GAAGAC	3 cut(s)	539, 656, 709
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpmI	CTGGAG	2 cut(s)	142, 745
BpuEI	CTTGAG	1 cut(s)	752
BpuMI	CCSGG	1 cut(s)	637
Bsa29I	ATCGAT	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	463
BsaI	GGTCTC	2 cut(s)	65, 171
BsaJI	CCNNGG	4 cut(s)	75, 181, 219, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	405, 642, 713
Bse1I	ACTGG	3 cut(s)	363, 627, 900
Bse3DI	GCAATG	2 cut(s)	845, 981
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 181, 219, 486
BseGI	GGATG	3 cut(s)	203, 645, 803
BseLI	CCNNNNNNNGG	3 cut(s)	405, 642, 713
BseMI	GCAATG	2 cut(s)	845, 981
BseMII	CTCAG	2 cut(s)	855, 942
BseNI	ACTGG	3 cut(s)	363, 627, 900
BseRI	GAGGAG	2 cut(s)	103, 106
BseXI	GCAGC	8 cut(s)	173, 441, 576, 619, 935, 938, 983, 1005
BsgI	GTGCAG	2 cut(s)	515, 1011
Bsh1236I	CGCG	2 cut(s)	63, 183
BshFI	GGCC	3 cut(s)	409, 725, 1024
BshNI	GGYRCC	1 cut(s)	944
BshVI	ATCGAT	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	636
BslFI	GGGAC	2 cut(s)	450, 460
BslI	CCNNNNNNNGG	3 cut(s)	405, 642, 713
BsmAI	GTCTC	4 cut(s)	65, 138, 171, 947
BsmFI	GGGAC	2 cut(s)	450, 460
BsnI	GGCC	3 cut(s)	409, 725, 1024
Bso31I	GGTCTC	2 cut(s)	65, 171
Bsp1286I	GDGCHC	2 cut(s)	228, 389
Bsp143I	GATC	4 cut(s)	22, 274, 523, 859
BspANI	GGCC	3 cut(s)	409, 725, 1024
BspCNI	CTCAG	2 cut(s)	856, 943
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	63, 183
BspLI	GGNNCC	5 cut(s)	157, 225, 883, 946, 1023
BspPI	GGATC	2 cut(s)	282, 854
BspT107I	GGYRCC	1 cut(s)	944
BspTNI	GGTCTC	2 cut(s)	65, 171
BsrDI	GCAATG	2 cut(s)	845, 981
BsrI	ACTGG	3 cut(s)	363, 627, 900
BssECI	CCNNGG	4 cut(s)	75, 181, 219, 486
BssMI	GATC	4 cut(s)	22, 274, 523, 859
BssNI	GRCGYC	1 cut(s)	463
BssT1I	CCWWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	269, 583
Bst6I	CTCTTC	1 cut(s)	1055
BstACI	GRCGYC	1 cut(s)	463
BstC8I	GCNNGC	4 cut(s)	38, 216, 1026, 1094
BstDEI	CTNAG	3 cut(s)	450, 864, 951
BstDSI	CCRYGG	2 cut(s)	181, 219
BstF5I	GGATG	3 cut(s)	203, 645, 803
BstFNI	CGCG	2 cut(s)	63, 183
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	25, 277, 526, 862
BstMAI	GTCTC	4 cut(s)	65, 138, 171, 947
BstMBI	GATC	4 cut(s)	22, 274, 523, 859
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 460, 604, 971
BstSCI	CCNGG	1 cut(s)	635
BstUI	CGCG	2 cut(s)	63, 183
BstV1I	GCAGC	8 cut(s)	173, 441, 576, 619, 935, 938, 983, 1005
BstV2I	GAAGAC	3 cut(s)	539, 656, 709
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	409, 725, 1024
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	181, 219
BtsCI	GGATG	3 cut(s)	203, 645, 803
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	3 cut(s)	588, 634, 840
Cac8I	GCNNGC	4 cut(s)	38, 216, 1026, 1094
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	4 cut(s)	243, 408, 882, 1022
Cfr42I	CCGCGG	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	4 cut(s)	52, 69, 452, 970
Csp6I	GTAC	2 cut(s)	579, 1062
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	3 cut(s)	169, 319, 1054
CviQI	GTAC	2 cut(s)	579, 1062
DdeI	CTNAG	3 cut(s)	450, 864, 951
DpnI	GATC	4 cut(s)	24, 276, 525, 861
DpnII	GATC	4 cut(s)	22, 274, 523, 859
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	1055
EarI	CTCTTC	1 cut(s)	1055
EciI	GGCGGA	2 cut(s)	235, 369
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	228, 389
Eco31I	GGTCTC	2 cut(s)	65, 171
Eco47I	GGWCC	2 cut(s)	243, 882
Eco57I	CTGAAG	2 cut(s)	812, 930
EcoO109I	RGGNCCY	1 cut(s)	1022
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	228, 389
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	3 cut(s)	172, 322, 1057
FaqI	GGGAC	2 cut(s)	450, 460
FatI	CATG	3 cut(s)	168, 318, 1053
FokI	GGATG	3 cut(s)	190, 652, 810
FriOI	GRGCYC	2 cut(s)	228, 389
FspBI	CTAG	2 cut(s)	576, 782
GlaI	GCGC	1 cut(s)	41
GsuI	CTGGAG	2 cut(s)	142, 745
HaeIII	GGCC	3 cut(s)	409, 725, 1024
HapII	CCGG	1 cut(s)	636
HgaI	GACGC	4 cut(s)	52, 69, 452, 970
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	3 cut(s)	172, 322, 1057
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	717, 1004
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	2 cut(s)	527, 697
Hpy188I	TCNGA	9 cut(s)	16, 59, 79, 121, 279, 831, 952, 986, 1003
Hpy188III	TCNNGA	7 cut(s)	159, 295, 710, 762, 782, 863, 1037
Hpy99I	CGWCG	6 cut(s)	63, 68, 134, 137, 200, 986
HpyAV	CCTTC	5 cut(s)	74, 413, 581, 765, 787
HpyCH4III	ACNGT	2 cut(s)	269, 583
HpyCH4V	TGCA	5 cut(s)	189, 496, 845, 1028, 1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 460, 604, 971
HpyF3I	CTNAG	3 cut(s)	450, 864, 951
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	3 cut(s)	172, 322, 1057
HspAI	GCGC	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	22, 274, 523, 859
LmnI	GCTCC	2 cut(s)	161, 223
Lsp1109I	GCAGC	8 cut(s)	173, 441, 576, 619, 935, 938, 983, 1005
LweI	GCATC	3 cut(s)	102, 321, 974
MaeI	CTAG	2 cut(s)	576, 782
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	4 cut(s)	24, 276, 525, 861
MboI	GATC	4 cut(s)	22, 274, 523, 859
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	2 cut(s)	228, 389
MluCI	AATT	6 cut(s)	323, 390, 401, 621, 736, 1044
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	998
MmeI	TCCRAC	3 cut(s)	82, 144, 964
MroXI	GAANNNNTTC	1 cut(s)	1044
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	637
MunI	CAATTG	1 cut(s)	390
MvnI	CGCG	2 cut(s)	63, 183
MwoI	GCNNNNNNNGC	4 cut(s)	48, 460, 604, 971
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	4 cut(s)	22, 274, 523, 859
NlaIII	CATG	3 cut(s)	172, 322, 1057
NlaIV	GGNNCC	5 cut(s)	157, 225, 883, 946, 1023
NmuCI	GTSAC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	1 cut(s)	717
PleI	GAGTC	1 cut(s)	998
PpsI	GAGTC	1 cut(s)	998
PspN4I	GGNNCC	5 cut(s)	157, 225, 883, 946, 1023
PspPI	GGNCC	4 cut(s)	243, 408, 882, 1022
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	580, 1063
RsaNI	GTAC	2 cut(s)	579, 1062
RseI	CAYNNNNRTG	1 cut(s)	317
SacII	CCGCGG	1 cut(s)	184
Sau3AI	GATC	4 cut(s)	22, 274, 523, 859
Sau96I	GGNCC	4 cut(s)	243, 408, 882, 1022
SchI	GAGTC	1 cut(s)	998
ScrFI	CCNGG	1 cut(s)	637
SduI	GDGCHC	2 cut(s)	228, 389
SfaNI	GCATC	3 cut(s)	102, 321, 974
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	243, 882
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	6 cut(s)	323, 390, 401, 621, 736, 1044
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	2 cut(s)	576, 782
StyD4I	CCNGG	1 cut(s)	635
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	269, 583
TaqI	TCGA	3 cut(s)	21, 294, 669
TasI	AATT	6 cut(s)	323, 390, 401, 621, 736, 1044
TatI	WGTACW	2 cut(s)	578, 1061
TauI	GCSGC	5 cut(s)	156, 186, 460, 463, 635
TfiI	GAWTC	1 cut(s)	717
TscAI	CASTG	3 cut(s)	588, 634, 847
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	8 cut(s)	186, 454, 564, 607, 923, 926, 971, 993
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	6 cut(s)	192, 335, 347, 432, 933, 1042
TspGWI	ACGGA	2 cut(s)	156, 363
TspRI	CASTG	3 cut(s)	588, 634, 847
VpaK11BI	GGWCC	2 cut(s)	243, 882
XapI	RAATTY	2 cut(s)	736, 1044
XbaI	TCTAGA	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	2 cut(s)	576, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.