Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

42482058 .. 42483634

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG199800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGATTTGAGATCTGAAATCGAGAGGCTCTGCAGATCTGAATCTGGTCTGAGATCGATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGGAAAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCGACCACGACGACGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGACACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATAAACACACGATGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAACTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACACAAGCCCAGCGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGCATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGGTACCAGCTCCAGGTGCATCTTAGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

269

Amino Acids

29.8

Weight (kDa)

9.68

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	112 - 149	7.1e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	779
AccII	CGCG	3 cut(s)	120, 228, 266
AclWI	GGATC	2 cut(s)	282, 327
AcoI	YGGCCR	1 cut(s)	750
AfaI	GTAC	2 cut(s)	601, 781
AfiI	CCNNNNNNNGG	3 cut(s)	423, 740, 789
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	413, 775
AhlI	ACTAGT	1 cut(s)	596
AjiI	CACGTC	1 cut(s)	383
AjnI	CCWGG	2 cut(s)	275, 788
AluBI	AGCT	4 cut(s)	259, 472, 786, 803
AluI	AGCT	4 cut(s)	259, 472, 786, 803
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	2 cut(s)	122, 183
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	282, 327
AoxI	GGCC	3 cut(s)	278, 485, 750
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	5 cut(s)	231, 472, 530, 585, 628
Asp718I	GGTACC	1 cut(s)	779
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	3 cut(s)	279, 426, 486
AsuHPI	GGTGA	2 cut(s)	548, 724
AvaII	GGWCC	1 cut(s)	426
BaeGI	GKGCMC	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	779
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	2 cut(s)	683, 736
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	5 cut(s)	218, 459, 517, 597, 640
BccI	CCATC	5 cut(s)	52, 331, 361, 709, 734
BceAI	ACGGC	3 cut(s)	211, 224, 278
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	2 cut(s)	277, 790
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	122, 183
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	2 cut(s)	590, 597
BfmI	CTRYAG	1 cut(s)	31
BglI	GCCNNNNNGGC	1 cut(s)	277
BglII	AGATCT	3 cut(s)	11, 35, 68
Bme1390I	CCNGG	2 cut(s)	277, 790
Bme18I	GGWCC	1 cut(s)	426
BmgBI	CACGTC	1 cut(s)	383
BmgT120I	GGNCC	3 cut(s)	279, 426, 486
BmiI	GGNNCC	3 cut(s)	202, 270, 781
BmrFI	CCNGG	2 cut(s)	277, 790
BmsI	GCATC	3 cut(s)	159, 351, 804
BpiI	GAAGAC	2 cut(s)	683, 736
BplI	GAGNNNNNCTC	2 cut(s)	718, 750
BpmI	CTGGAG	2 cut(s)	187, 772
BpuEI	CTTGAG	1 cut(s)	787
Bsa29I	ATCGAT	2 cut(s)	56, 78
BsaBI	GATNNNNATC	2 cut(s)	40, 341
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	132, 226, 264, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	423, 740, 789
Bse118I	RCCGGY	1 cut(s)	662
Bse1I	ACTGG	1 cut(s)	648
Bse8I	GATNNNNATC	2 cut(s)	40, 341
BseBI	CCWGG	2 cut(s)	277, 790
BseCI	ATCGAT	2 cut(s)	56, 78
BseDI	CCNNGG	4 cut(s)	132, 226, 264, 507
BseGI	GGATG	1 cut(s)	248
BseJI	GATNNNNATC	2 cut(s)	40, 341
BseLI	CCNNNNNNNGG	3 cut(s)	423, 740, 789
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	5 cut(s)	218, 459, 517, 597, 640
BseYI	CCCAGC	2 cut(s)	620, 703
Bsh1236I	CGCG	3 cut(s)	120, 228, 266
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	280, 487, 752
BshNI	GGYRCC	1 cut(s)	779
BshVI	ATCGAT	2 cut(s)	56, 78
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	3 cut(s)	423, 740, 789
BsmAI	GTCTC	2 cut(s)	122, 183
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	3 cut(s)	280, 487, 752
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	273, 519
Bsp143I	GATC	8 cut(s)	11, 35, 53, 68, 79, 287, 319, 544
BspANI	GGCC	3 cut(s)	280, 487, 752
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	2 cut(s)	56, 78
BspFNI	CGCG	3 cut(s)	120, 228, 266
BspLI	GGNNCC	3 cut(s)	202, 270, 781
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	2 cut(s)	282, 327
BspQI	GCTCTTC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	779
BspTNI	GGTCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	662
BsrI	ACTGG	1 cut(s)	648
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	4 cut(s)	132, 226, 264, 507
BssMI	GATC	8 cut(s)	11, 35, 53, 68, 79, 287, 319, 544
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	277, 790
Bst4CI	ACNGT	3 cut(s)	314, 526, 604
Bst6I	CTCTTC	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	95, 261, 626
BstDEI	CTNAG	3 cut(s)	50, 468, 799
BstDSI	CCRYGG	2 cut(s)	226, 264
BstF5I	GGATG	1 cut(s)	248
BstFNI	CGCG	3 cut(s)	120, 228, 266
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	8 cut(s)	14, 38, 56, 71, 82, 290, 322, 547
BstMAI	GTCTC	2 cut(s)	122, 183
BstMBI	GATC	8 cut(s)	11, 35, 53, 68, 79, 287, 319, 544
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 277, 478, 481, 484, 625, 792
BstNI	CCWGG	2 cut(s)	277, 790
BstSCI	CCNGG	2 cut(s)	275, 788
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	3 cut(s)	120, 228, 266
BstV1I	GCAGC	5 cut(s)	218, 459, 517, 597, 640
BstV2I	GAAGAC	2 cut(s)	683, 736
BstX2I	RGATCY	5 cut(s)	11, 35, 68, 287, 319
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	5 cut(s)	11, 35, 68, 287, 319
Bsu15I	ATCGAT	2 cut(s)	56, 78
BsuRI	GGCC	3 cut(s)	280, 487, 752
BsuTUI	ATCGAT	2 cut(s)	56, 78
BtgI	CCRYGG	2 cut(s)	226, 264
BtrI	CACGTC	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	248
BtsIMutI	CAGTG	2 cut(s)	609, 655
Cac8I	GCNNGC	3 cut(s)	95, 261, 626
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	3 cut(s)	279, 426, 486
Cfr42I	CCGCGG	2 cut(s)	229, 267
ClaI	ATCGAT	2 cut(s)	56, 78
CseI	GACGC	2 cut(s)	109, 126
Csp6I	GTAC	2 cut(s)	600, 780
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	3 cut(s)	214, 349, 667
CviQI	GTAC	2 cut(s)	600, 780
DdeI	CTNAG	3 cut(s)	50, 468, 799
DpnI	GATC	8 cut(s)	13, 37, 55, 70, 81, 289, 321, 546
DpnII	GATC	8 cut(s)	11, 35, 53, 68, 79, 287, 319, 544
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
EciI	GGCGGA	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	275, 788
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	3 cut(s)	217, 352, 670
FaiI	YATR	7 cut(s)	215, 306, 350, 375, 668, 725, 806
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	3 cut(s)	213, 348, 666
FbaI	TGATCA	1 cut(s)	544
FokI	GGATG	1 cut(s)	235
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	590, 597
GlaI	GCGC	1 cut(s)	98
GsaI	CCCAGC	2 cut(s)	624, 707
GsuI	CTGGAG	2 cut(s)	187, 772
HaeIII	GGCC	3 cut(s)	280, 487, 752
HapII	CCGG	1 cut(s)	663
HgaI	GACGC	2 cut(s)	109, 126
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	217, 352, 670
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	41, 387, 744
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	2 cut(s)	548, 724
Hpy166II	GTNNAC	2 cut(s)	386, 517
Hpy188I	TCNGA	9 cut(s)	16, 40, 51, 73, 116, 136, 175, 287, 324
Hpy188III	TCNNGA	3 cut(s)	22, 204, 737
Hpy8I	GTNNAC	2 cut(s)	386, 517
Hpy99I	CGWCG	6 cut(s)	120, 125, 185, 188, 245, 314
HpyAV	CCTTC	3 cut(s)	131, 398, 431
HpyCH4III	ACNGT	3 cut(s)	314, 526, 604
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	5 cut(s)	33, 234, 358, 517, 795
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 277, 478, 481, 484, 625, 792
HpyF3I	CTNAG	3 cut(s)	50, 468, 799
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	217, 352, 670
HspAI	GCGC	1 cut(s)	97
KpnI	GGTACC	1 cut(s)	783
Ksp22I	TGATCA	1 cut(s)	544
KspI	CCGCGG	2 cut(s)	229, 267
Kzo9I	GATC	8 cut(s)	11, 35, 53, 68, 79, 287, 319, 544
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	3 cut(s)	206, 268, 791
Lsp1109I	GCAGC	5 cut(s)	218, 459, 517, 597, 640
LweI	GCATC	3 cut(s)	159, 351, 804
MaeI	CTAG	2 cut(s)	590, 597
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	8 cut(s)	13, 37, 55, 70, 81, 289, 321, 546
MboI	GATC	8 cut(s)	11, 35, 53, 68, 79, 287, 319, 544
MboII	GAAGA	7 cut(s)	145, 376, 565, 620, 685, 688, 741
MflI	RGATCY	5 cut(s)	11, 35, 68, 287, 319
MhlI	GDGCHC	2 cut(s)	273, 519
MluCI	AATT	3 cut(s)	353, 419, 642
MluI	ACGCGT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	2 cut(s)	139, 198
MslI	CAYNNNNRTG	2 cut(s)	347, 665
MspA1I	CMGCKG	2 cut(s)	228, 266
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	2 cut(s)	277, 790
MvaI	CCWGG	2 cut(s)	277, 790
MvnI	CGCG	3 cut(s)	120, 228, 266
MwoI	GCNNNNNNNGC	7 cut(s)	90, 277, 478, 481, 484, 625, 792
NdeII	GATC	8 cut(s)	11, 35, 53, 68, 79, 287, 319, 544
NlaIII	CATG	3 cut(s)	217, 352, 670
NlaIV	GGNNCC	3 cut(s)	202, 270, 781
NmeAIII	GCCGAG	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	2 cut(s)	217, 396
PfeI	GAWTC	2 cut(s)	41, 744
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	275, 788
PspFI	CCCAGC	2 cut(s)	620, 703
PspGI	CCWGG	2 cut(s)	275, 788
PspN4I	GGNNCC	3 cut(s)	202, 270, 781
PspPI	GGNCC	3 cut(s)	279, 426, 486
PstI	CTGCAG	1 cut(s)	35
PsuI	RGATCY	5 cut(s)	11, 35, 68, 287, 319
PvuI	CGATCG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	601, 781
RsaNI	GTAC	2 cut(s)	600, 780
RseI	CAYNNNNRTG	2 cut(s)	347, 665
SacII	CCGCGG	2 cut(s)	229, 267
SapI	GCTCTTC	1 cut(s)	548
Sau3AI	GATC	8 cut(s)	11, 35, 53, 68, 79, 287, 319, 544
Sau96I	GGNCC	3 cut(s)	279, 426, 486
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	2 cut(s)	277, 790
SduI	GDGCHC	2 cut(s)	273, 519
SfaNI	GCATC	3 cut(s)	159, 351, 804
SfcI	CTRYAG	1 cut(s)	31
Sfr303I	CCGCGG	2 cut(s)	229, 267
SgrBI	CCGCGG	2 cut(s)	229, 267
SinI	GGWCC	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	347, 665
SmlI	CTYRAG	1 cut(s)	766
SmoI	CTYRAG	1 cut(s)	766
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	3 cut(s)	353, 419, 642
SspMI	CTAG	2 cut(s)	590, 597
StyD4I	CCNGG	2 cut(s)	275, 788
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	3 cut(s)	314, 526, 604
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	21, 56, 78, 696
TasI	AATT	3 cut(s)	353, 419, 642
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	9 cut(s)	201, 231, 266, 478, 481, 484, 487, 656, 659
TfiI	GAWTC	2 cut(s)	41, 744
TscAI	CASTG	2 cut(s)	609, 655
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	5 cut(s)	231, 472, 530, 585, 628
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	4 cut(s)	237, 365, 377, 450
TspGWI	ACGGA	2 cut(s)	201, 393
TspRI	CASTG	2 cut(s)	609, 655
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	426
XspI	CTAG	2 cut(s)	590, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.