Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

27399961 .. 27400740

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGATTTGAGGTCTGAAATCGATCGCTGTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGGAAGTAAATCTTCGCATCTTCACGCTCGCTTCCTCCTCCTCCGACCACGACGACGACGACGCAGACACCGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCCAGCTCGCCGTGGAGCCCACCAGACCCGTCAGGTCTGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGGATCGGCATGAAATTGCTGATGAAGATGGGCTATAATGGAGGAGGACTGGGGAAGAACGAGAAAGGTATTGTGAGCCCAATTGAAGCCGAATTGAGGCCTAAAAATAAAGGTCTTGGTTTTGATTACAAGGAGGGGGCTAAGCTGCGGCGGCAGACCACATTGTTTGTGAAAGCCAAGGTGGTGCAGAAAAGTGTGGCTCCTGGTGACGAACATCACAAGAAGAGCAAAACAGAAATAGCCAAAAAACCAAGCAGCCTAAAGACTAGTACAGTGAAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTACAAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATTTAAGTTTGAAAGATACCAGCTCCAGGTGGATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

259

Amino Acids

28.67

Weight (kDa)

9.67

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	101 - 142	8.2e-16	G-patch domain
G-patch_2	PF12656	104 - 145	1.2e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	63, 180
AciI	CCGC	6 cut(s)	150, 178, 180, 454, 457, 630
AclWI	GGATC	3 cut(s)	279, 317, 773
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	733
AfaI	GTAC	2 cut(s)	577, 655
AfiI	CCNNNNNNNGG	4 cut(s)	402, 639, 710, 759
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	392, 745
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	2 cut(s)	508, 758
AluBI	AGCT	4 cut(s)	211, 451, 756, 773
AluI	AGCT	4 cut(s)	211, 451, 756, 773
Alw26I	GTCTC	2 cut(s)	65, 168
AlwI	GGATC	3 cut(s)	279, 317, 773
AoxI	GGCC	2 cut(s)	404, 720
ApeKI	GCWGC	4 cut(s)	183, 451, 561, 604
ApoI	RAATTY	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	42
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	2 cut(s)	524, 694
BanII	GRGCYC	2 cut(s)	225, 386
BauI	CACGAG	1 cut(s)	301
BbsI	GAAGAC	2 cut(s)	653, 706
BbvI	GCAGC	4 cut(s)	170, 438, 573, 616
BccI	CCATC	4 cut(s)	328, 631, 679, 704
BceAI	ACGGC	3 cut(s)	176, 200, 230
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	510, 760
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	65, 168
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	1 cut(s)	573
BisI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 562, 605, 630
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	9 cut(s)	152, 182, 185, 453, 456, 459, 563, 606, 631
Bme1390I	CCNGG	3 cut(s)	510, 634, 760
BmiI	GGNNCC	3 cut(s)	154, 222, 507
BmrFI	CCNGG	3 cut(s)	510, 634, 760
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	2 cut(s)	653, 706
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	2 cut(s)	139, 742
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	634
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	4 cut(s)	75, 178, 216, 483
Bsc4I	CCNNNNNNNGG	4 cut(s)	402, 639, 710, 759
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	360, 624
BseBI	CCWGG	2 cut(s)	510, 760
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 178, 216, 483
BseGI	GGATG	2 cut(s)	200, 642
BseLI	CCNNNNNNNGG	4 cut(s)	402, 639, 710, 759
BseNI	ACTGG	2 cut(s)	360, 624
BseRI	GAGGAG	3 cut(s)	103, 106, 363
BseXI	GCAGC	4 cut(s)	170, 438, 573, 616
BseYI	CCCAGC	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	512
Bsh1236I	CGCG	2 cut(s)	63, 180
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	406, 722
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	147, 633
BslI	CCNNNNNNNGG	4 cut(s)	402, 639, 710, 759
BsmAI	GTCTC	2 cut(s)	65, 168
BsnI	GGCC	2 cut(s)	406, 722
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	2 cut(s)	225, 386
Bsp143I	GATC	4 cut(s)	22, 271, 309, 765
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	6 cut(s)	150, 178, 180, 454, 457, 630
BspANI	GGCC	2 cut(s)	406, 722
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	63, 180
BspLI	GGNNCC	3 cut(s)	154, 222, 507
BspPI	GGATC	3 cut(s)	279, 317, 773
BspQI	GCTCTTC	1 cut(s)	524
BspTNI	GGTCTC	2 cut(s)	65, 168
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	360, 624
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	4 cut(s)	75, 178, 216, 483
BssMI	GATC	4 cut(s)	22, 271, 309, 765
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	510, 760
Bst4CI	ACNGT	2 cut(s)	266, 580
Bst6I	CTCTTC	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	38, 105, 213
BstDEI	CTNAG	2 cut(s)	447, 769
BstDSI	CCRYGG	2 cut(s)	178, 216
BstF5I	GGATG	2 cut(s)	200, 642
BstFNI	CGCG	2 cut(s)	63, 180
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	25, 274, 312, 768
BstMAI	GTCTC	2 cut(s)	65, 168
BstMBI	GATC	4 cut(s)	22, 271, 309, 765
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 457, 601
BstNI	CCWGG	2 cut(s)	510, 760
BstSCI	CCNGG	3 cut(s)	508, 632, 758
BstUI	CGCG	2 cut(s)	63, 180
BstV1I	GCAGC	4 cut(s)	170, 438, 573, 616
BstV2I	GAAGAC	2 cut(s)	653, 706
BstX2I	RGATCY	2 cut(s)	271, 765
BstYI	RGATCY	2 cut(s)	271, 765
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	406, 722
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	178, 216
BtsCI	GGATG	2 cut(s)	200, 642
BtsIMutI	CAGTG	2 cut(s)	585, 631
Cac8I	GCNNGC	3 cut(s)	38, 105, 213
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	146
Cfr42I	CCGCGG	1 cut(s)	181
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	3 cut(s)	52, 69, 146
Csp6I	GTAC	2 cut(s)	576, 654
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	2 cut(s)	166, 316
CviQI	GTAC	2 cut(s)	576, 654
DdeI	CTNAG	2 cut(s)	447, 769
DpnI	GATC	4 cut(s)	24, 273, 311, 767
DpnII	GATC	4 cut(s)	22, 271, 309, 765
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	225, 386
Eco31I	GGTCTC	2 cut(s)	65, 168
EcoRII	CCWGG	2 cut(s)	508, 758
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	2 cut(s)	225, 386
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	2 cut(s)	169, 319
FaiI	YATR	6 cut(s)	167, 258, 317, 342, 695, 776
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	2 cut(s)	165, 315
Fnu4HI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 562, 605, 630
FokI	GGATG	2 cut(s)	187, 649
FriOI	GRGCYC	2 cut(s)	225, 386
Fsp4HI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 562, 605, 630
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 562, 605, 630
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	2 cut(s)	139, 742
HaeIII	GGCC	2 cut(s)	406, 722
HapII	CCGG	2 cut(s)	147, 633
HgaI	GACGC	3 cut(s)	52, 69, 146
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	169, 319
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	714
HpaII	CCGG	2 cut(s)	147, 633
HphI	GGTGA	2 cut(s)	524, 694
Hpy188I	TCNGA	5 cut(s)	16, 59, 79, 121, 276
Hpy188III	TCNNGA	3 cut(s)	156, 292, 707
Hpy99I	CGWCG	8 cut(s)	63, 68, 131, 134, 137, 140, 197, 266
HpyCH4III	ACNGT	2 cut(s)	266, 580
HpyCH4V	TGCA	2 cut(s)	186, 493
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 457, 601
HpyF3I	CTNAG	2 cut(s)	447, 769
Hsp92II	CATG	2 cut(s)	169, 319
HspAI	GCGC	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	22, 271, 309, 765
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	4 cut(s)	158, 220, 511, 761
Lsp1109I	GCAGC	4 cut(s)	170, 438, 573, 616
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	4 cut(s)	24, 273, 311, 767
MboI	GATC	4 cut(s)	22, 271, 309, 765
MboII	GAAGA	8 cut(s)	80, 88, 343, 373, 541, 655, 658, 711
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	2 cut(s)	271, 765
MhlI	GDGCHC	2 cut(s)	225, 386
MluCI	AATT	5 cut(s)	320, 387, 398, 618, 733
MluI	ACGCGT	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	82, 144
MseI	TTAA	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	2 cut(s)	147, 633
MspR9I	CCNGG	3 cut(s)	510, 634, 760
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	510, 760
MvnI	CGCG	2 cut(s)	63, 180
MwoI	GCNNNNNNNGC	3 cut(s)	33, 457, 601
NciI	CCSGG	1 cut(s)	634
NdeII	GATC	4 cut(s)	22, 271, 309, 765
NlaIII	CATG	2 cut(s)	169, 319
NlaIV	GGNNCC	3 cut(s)	154, 222, 507
NmuCI	GTSAC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 169
PfeI	GAWTC	1 cut(s)	714
PkrI	GCNGC	9 cut(s)	152, 182, 185, 453, 456, 459, 563, 606, 631
Ple19I	CGATCG	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	508, 758
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	2 cut(s)	508, 758
PspN4I	GGNNCC	3 cut(s)	154, 222, 507
PsuI	RGATCY	2 cut(s)	271, 765
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	577, 655
RsaNI	GTAC	2 cut(s)	576, 654
SacII	CCGCGG	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 562, 605, 630
Sau3AI	GATC	4 cut(s)	22, 271, 309, 765
ScrFI	CCNGG	3 cut(s)	510, 634, 760
SduI	GDGCHC	2 cut(s)	225, 386
SfaNI	GCATC	1 cut(s)	102
Sfr303I	CCGCGG	1 cut(s)	181
SgrAI	CRCCGGYG	1 cut(s)	146
SgrBI	CCGCGG	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	5 cut(s)	320, 387, 398, 618, 733
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	6 cut(s)	150, 178, 180, 454, 457, 630
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	1 cut(s)	573
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	3 cut(s)	508, 632, 758
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	266, 580
TaqI	TCGA	3 cut(s)	21, 291, 666
TasI	AATT	5 cut(s)	320, 387, 398, 618, 733
TatI	WGTACW	2 cut(s)	575, 653
TauI	GCSGC	5 cut(s)	153, 183, 457, 460, 632
TfiI	GAWTC	1 cut(s)	714
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TscAI	CASTG	2 cut(s)	585, 631
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	4 cut(s)	183, 451, 561, 604
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	189, 332, 344
TspRI	CASTG	2 cut(s)	585, 631
XapI	RAATTY	1 cut(s)	733
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.