RLG00000008128

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
25979778 .. 25980852
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008128

Sequence Viewer

Length: 840 bp
ATGGATTTGAGATCTGAAATCGAGAGGCTCTGCAGATCTGAATCTGGTCTGAGATCGATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGGACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTTCTCCTCCTCCGACCACGACGTCGACGAAGGAGACAACGGCGGCTCTAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCCACAGGCCCGTCAGATCCGCTGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTGTAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGCAGGGGACTAAGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGATACTAGTACAGTGGAAGAACACAAGCCCAACGAGCAACCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTACAAAAGGTGTCGATGTGCTGGAAAAGGTGATGGCTGATGTGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATTTGAGTCTGAAAGTGCAAAAGGTCCGATATGTGGACTTCGAAATTTTGAAGTGTAATTAA

Protein Analysis

280

Amino Acids

31.16

Weight (kDa)

9.39

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AatII GACGTC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 120, 237, 275
AclWI GGATC 2 cut(s) 291, 336
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 2 cut(s) 778, 822
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 2 cut(s) 622, 700
AfiI CCNNNNNNNGG 4 cut(s) 447, 684, 755, 811
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 2 cut(s) 437, 829
AhlI ACTAGT 1 cut(s) 617
AjiI CACGTC 1 cut(s) 407
AleI CACNNNNGTG 1 cut(s) 543
AluBI AGCT 2 cut(s) 268, 496
AluI AGCT 2 cut(s) 268, 496
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 3 cut(s) 122, 192, 225
Alw44I GTGCAC 1 cut(s) 536
AlwI GGATC 2 cut(s) 291, 336
AoxI GGCC 3 cut(s) 287, 506, 765
ApaLI GTGCAC 1 cut(s) 536
ApeKI GCWGC 4 cut(s) 240, 496, 551, 606
ApoI RAATTY 2 cut(s) 778, 822
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 4 cut(s) 288, 450, 507, 802
AsuC2I CCSGG 1 cut(s) 679
AsuHPI GGTGA 2 cut(s) 569, 739
AsuII TTCGAA 1 cut(s) 819
AvaII GGWCC 2 cut(s) 450, 802
BaeGI GKGCMC 1 cut(s) 540
BanII GRGCYC 1 cut(s) 282
BauI CACGAG 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 698, 751
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 4 cut(s) 227, 483, 538, 618
BccI CCATC 5 cut(s) 52, 385, 676, 724, 749
BceAI ACGGC 2 cut(s) 220, 233
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 1 cut(s) 679
BcoDI GTCTC 3 cut(s) 122, 192, 225
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 3 cut(s) 213, 611, 618
BfmI CTRYAG 1 cut(s) 31
BglI GCCNNNNNGGC 1 cut(s) 286
BglII AGATCT 3 cut(s) 11, 35, 68
Bme1390I CCNGG 1 cut(s) 679
Bme18I GGWCC 2 cut(s) 450, 802
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 4 cut(s) 288, 450, 507, 802
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 679
BmsI GCATC 2 cut(s) 159, 375
BpiI GAAGAC 2 cut(s) 698, 751
BplI GAGNNNNNCTC 2 cut(s) 733, 765
Bpu14I TTCGAA 1 cut(s) 819
BpuMI CCSGG 1 cut(s) 679
Bsa29I ATCGAT 2 cut(s) 56, 78
BsaBI GATNNNNATC 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 2 cut(s) 122, 225
BsaJI CCNNGG 4 cut(s) 132, 235, 273, 528
Bsc4I CCNNNNNNNGG 4 cut(s) 447, 684, 755, 811
Bse1I ACTGG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 40
BseCI ATCGAT 2 cut(s) 56, 78
BseDI CCNNGG 4 cut(s) 132, 235, 273, 528
BseGI GGATG 2 cut(s) 257, 687
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 4 cut(s) 447, 684, 755, 811
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 669
BseRI GAGGAG 2 cut(s) 160, 163
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 4 cut(s) 227, 483, 538, 618
Bsh1236I CGCG 3 cut(s) 120, 237, 275
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 289, 508, 767
BshVI ATCGAT 2 cut(s) 56, 78
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 1 cut(s) 678
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 4 cut(s) 447, 684, 755, 811
BsmAI GTCTC 3 cut(s) 122, 192, 225
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 3 cut(s) 289, 508, 767
Bso31I GGTCTC 2 cut(s) 122, 225
Bsp119I TTCGAA 1 cut(s) 819
Bsp1286I GDGCHC 2 cut(s) 282, 540
Bsp143I GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 565
BspANI GGCC 3 cut(s) 289, 508, 767
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 2 cut(s) 56, 78
BspFNI CGCG 3 cut(s) 120, 237, 275
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 35
BspPI GGATC 2 cut(s) 291, 336
BspQI GCTCTTC 1 cut(s) 569
BspT104I TTCGAA 1 cut(s) 819
BspTNI GGTCTC 2 cut(s) 122, 225
BsrI ACTGG 1 cut(s) 669
BssECI CCNNGG 4 cut(s) 132, 235, 273, 528
BssMI GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 565
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 358
Bst4CI ACNGT 2 cut(s) 323, 625
Bst6I CTCTTC 1 cut(s) 569
BstACI GRCGYC 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 819
BstC8I GCNNGC 2 cut(s) 95, 270
BstDEI CTNAG 2 cut(s) 50, 492
BstDSI CCRYGG 2 cut(s) 235, 273
BstF5I GGATG 2 cut(s) 257, 687
BstFNI CGCG 3 cut(s) 120, 237, 275
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 8 cut(s) 14, 38, 56, 71, 82, 299, 331, 568
BstMAI GTCTC 3 cut(s) 122, 192, 225
BstMBI GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 565
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 90, 286, 502, 505, 646
BstSCI CCNGG 1 cut(s) 677
BstSFI CTRYAG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 3 cut(s) 120, 237, 275
BstV1I GCAGC 4 cut(s) 227, 483, 538, 618
BstV2I GAAGAC 2 cut(s) 698, 751
BstX2I RGATCY 5 cut(s) 11, 35, 68, 296, 328
BstYI RGATCY 5 cut(s) 11, 35, 68, 296, 328
Bsu15I ATCGAT 2 cut(s) 56, 78
BsuRI GGCC 3 cut(s) 289, 508, 767
BsuTUI ATCGAT 2 cut(s) 56, 78
BtgI CCRYGG 2 cut(s) 235, 273
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 2 cut(s) 257, 687
BtsIMutI CAGTG 2 cut(s) 630, 676
Cac8I GCNNGC 2 cut(s) 95, 270
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 4 cut(s) 288, 450, 507, 802
Cfr42I CCGCGG 2 cut(s) 238, 276
ClaI ATCGAT 2 cut(s) 56, 78
CseI GACGC 2 cut(s) 109, 126
Csp6I GTAC 2 cut(s) 621, 699
CspCI CAANNNNNGTGG 2 cut(s) 499, 534
CviAII CATG 2 cut(s) 223, 373
CviQI GTAC 2 cut(s) 621, 699
DdeI CTNAG 2 cut(s) 50, 492
DpnI GATC 8 cut(s) 13, 37, 55, 70, 81, 298, 330, 567
DpnII GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 565
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 2 cut(s) 122, 225
Eco47I GGWCC 2 cut(s) 450, 802
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 226, 376
FaiI YATR 4 cut(s) 224, 315, 374, 810
FaqI GGGAC 1 cut(s) 502
FatI CATG 2 cut(s) 222, 372
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 1 cut(s) 189
FokI GGATG 2 cut(s) 244, 694
FriOI GRGCYC 1 cut(s) 282
FspBI CTAG 3 cut(s) 213, 611, 618
GlaI GCGC 1 cut(s) 98
HaeIII GGCC 3 cut(s) 289, 508, 767
HapII CCGG 1 cut(s) 678
HgaI GACGC 2 cut(s) 109, 126
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 2 cut(s) 226, 376
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 4 cut(s) 41, 411, 759, 784
HpaII CCGG 1 cut(s) 678
HphI GGTGA 2 cut(s) 569, 739
Hpy166II GTNNAC 4 cut(s) 190, 410, 538, 814
Hpy188III TCNNGA 4 cut(s) 22, 213, 349, 752
Hpy8I GTNNAC 4 cut(s) 190, 410, 538, 814
Hpy99I CGWCG 7 cut(s) 120, 125, 188, 191, 194, 254, 323
HpyAV CCTTC 4 cut(s) 131, 188, 422, 455
HpyCH4III ACNGT 2 cut(s) 323, 625
HpyCH4IV ACGT 2 cut(s) 186, 406
HpyCH4V TGCA 5 cut(s) 33, 243, 382, 538, 796
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 286, 502, 505, 646
HpyF3I CTNAG 2 cut(s) 50, 492
HpySE526I ACGT 2 cut(s) 186, 406
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 2 cut(s) 226, 376
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 565
KspI CCGCGG 2 cut(s) 238, 276
Kzo9I GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 565
LguI GCTCTTC 1 cut(s) 569
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 7 cut(s) 30, 271, 470, 540, 682, 691, 704
Lsp1109I GCAGC 4 cut(s) 227, 483, 538, 618
LweI GCATC 2 cut(s) 159, 375
MaeI CTAG 3 cut(s) 213, 611, 618
MaeII ACGT 2 cut(s) 186, 406
MaeIII GTNAC 2 cut(s) 398, 557
MalI GATC 8 cut(s) 13, 37, 55, 70, 81, 298, 330, 567
MboI GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 565
MboII GAAGA 7 cut(s) 145, 400, 586, 641, 700, 703, 756
MflI RGATCY 5 cut(s) 11, 35, 68, 296, 328
MhlI GDGCHC 2 cut(s) 282, 540
MluCI AATT 6 cut(s) 377, 443, 663, 778, 822, 835
MluI ACGCGT 1 cut(s) 118
MlyI GAGTC 2 cut(s) 405, 793
MmeI TCCRAC 2 cut(s) 139, 201
MseI TTAA 1 cut(s) 838
MslI CAYNNNNRTG 2 cut(s) 371, 543
MspA1I CMGCKG 3 cut(s) 237, 275, 302
MspI CCGG 1 cut(s) 678
MspR9I CCNGG 1 cut(s) 679
MvnI CGCG 3 cut(s) 120, 237, 275
MwoI GCNNNNNNNGC 5 cut(s) 90, 286, 502, 505, 646
NciI CCSGG 1 cut(s) 679
NdeII GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 565
NlaIII CATG 2 cut(s) 226, 376
NlaIV GGNNCC 1 cut(s) 279
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 557
NspV TTCGAA 1 cut(s) 819
OliI CACNNNNGTG 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 569
PcsI WCGNNNNNNNCGW 3 cut(s) 189, 226, 420
PfeI GAWTC 2 cut(s) 41, 759
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 2 cut(s) 405, 792
PpsI GAGTC 2 cut(s) 405, 792
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 4 cut(s) 288, 450, 507, 802
PstI CTGCAG 1 cut(s) 35
PsuI RGATCY 5 cut(s) 11, 35, 68, 296, 328
PvuI CGATCG 1 cut(s) 82
RsaI GTAC 2 cut(s) 622, 700
RsaNI GTAC 2 cut(s) 621, 699
RseI CAYNNNNRTG 2 cut(s) 371, 543
SacII CCGCGG 2 cut(s) 238, 276
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 569
SaqAI TTAA 1 cut(s) 838
Sau3AI GATC 8 cut(s) 11, 35, 53, 68, 79, 296, 328, 565
Sau96I GGNCC 4 cut(s) 288, 450, 507, 802
SchI GAGTC 2 cut(s) 405, 793
ScrFI CCNGG 1 cut(s) 679
SduI GDGCHC 2 cut(s) 282, 540
SfaNI GCATC 2 cut(s) 159, 375
SfcI CTRYAG 1 cut(s) 31
Sfr303I CCGCGG 2 cut(s) 238, 276
SfuI TTCGAA 1 cut(s) 819
SgrBI CCGCGG 2 cut(s) 238, 276
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 2 cut(s) 450, 802
SmiMI CAYNNNNRTG 2 cut(s) 371, 543
SpeI ACTAGT 1 cut(s) 617
Sse9I AATT 6 cut(s) 377, 443, 663, 778, 822, 835
SspI AATATT 1 cut(s) 337
SspMI CTAG 3 cut(s) 213, 611, 618
StyD4I CCNGG 1 cut(s) 677
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 2 cut(s) 323, 625
TaiI ACGT 2 cut(s) 189, 409
TaqI TCGA 7 cut(s) 21, 56, 78, 189, 348, 711, 819
TasI AATT 6 cut(s) 377, 443, 663, 778, 822, 835
TatI WGTACW 2 cut(s) 620, 698
TauI GCSGC 7 cut(s) 210, 240, 275, 502, 505, 508, 677
TfiI GAWTC 2 cut(s) 41, 759
Tru1I TTAA 1 cut(s) 838
Tru9I TTAA 1 cut(s) 838
TscAI CASTG 2 cut(s) 630, 676
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 4 cut(s) 240, 496, 551, 606
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 4 cut(s) 246, 389, 401, 474
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 2 cut(s) 630, 676
VneI GTGCAC 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 450, 802
XapI RAATTY 2 cut(s) 778, 822
XbaI TCTAGA 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 3 cut(s) 213, 611, 618
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.