Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

24606 .. 25367

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggatttgagatctgaaatcgatcgcctttctcgcaagcgcaaggaggacaatctccgacgcgtcgttgagacctccgaaggaaatctccgcatcttcgttctcgctttctcctcctccgaccacgacgtcgacgaaggagacaacggcggctccagaaaacgcatgaggcgagaccgcggctgcaacgccgtcgtttcatccaccaagctcgccgcggagcccaccaggcccgtcagatctgctgtgaaaccctatgacgacggtggggatctgaataaacacacgaggggcatcggcatgaaattgcagatgaagatgggctataacggacgtggactcggcaacaacgaggaaggtattgaagccgaattgaggtccaaaaatgaaggtcttggttttgattacaaggaggggactaagctgctgcggcggcggcccacatcgtttgtgaaagccaaggtggtgcacaaaagtgtcgctgctggtgacaatgatcacaagaagagcaaaacagaaataaccaaaaaaccaagcagcctagacactagtacagtggaagaacacaagcccaacgagcagcctaatgaggcaattaccagtgccgccgccaccgggatggagaagaagacgattaccaaaggtgtcgatttgctgggaaaggtgatggctgatatgagaagacctcttgatggaatcttggccgactttgagaacttgagtttgaaaggtaccagctccacgtgcatcttagctatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

253

Amino Acids

27.89

Weight (kDa)

9.48

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	132
Acc65I	GGTACC	1 cut(s)	731
AccB1I	GGYRCC	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	3 cut(s)	63, 180, 218
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	702
AcvI	CACGTG	1 cut(s)	744
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	553, 733
AfiI	CCNNNNNNNGG	3 cut(s)	375, 615, 692
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	365, 727
AhlI	ACTAGT	1 cut(s)	548
AjiI	CACGTC	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	227
AleI	CACNNNNGTG	1 cut(s)	474
AluBI	AGCT	4 cut(s)	211, 424, 738, 755
AluI	AGCT	4 cut(s)	211, 424, 738, 755
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	3 cut(s)	65, 135, 168
Alw44I	GTGCAC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	3 cut(s)	230, 437, 702
ApaLI	GTGCAC	1 cut(s)	467
ApeKI	GCWGC	6 cut(s)	183, 424, 427, 482, 537, 580
Asp718I	GGTACC	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	231, 378, 438
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	2 cut(s)	500, 676
AvaII	GGWCC	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	731
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	286
BbrPI	CACGTG	1 cut(s)	744
BbsI	GAAGAC	2 cut(s)	635, 688
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	6 cut(s)	170, 411, 414, 469, 549, 592
BccI	CCATC	4 cut(s)	313, 613, 661, 686
BceAI	ACGGC	2 cut(s)	163, 176
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	3 cut(s)	65, 135, 168
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	2 cut(s)	542, 549
BglI	GCCNNNNNGGC	1 cut(s)	229
BglII	AGATCT	2 cut(s)	11, 239
Bme1390I	CCNGG	2 cut(s)	229, 616
Bme18I	GGWCC	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	231, 378, 438
BmiI	GGNNCC	3 cut(s)	154, 222, 733
BmrFI	CCNGG	2 cut(s)	229, 616
BmsI	GCATC	3 cut(s)	102, 303, 756
BpiI	GAAGAC	2 cut(s)	635, 688
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	739
BpuMI	CCSGG	1 cut(s)	616
Bsa29I	ATCGAT	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	744
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	3 cut(s)	178, 216, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	375, 615, 692
Bse1I	ACTGG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	178, 216, 459
BseGI	GGATG	2 cut(s)	200, 624
BseLI	CCNNNNNNNGG	3 cut(s)	375, 615, 692
BseNI	ACTGG	1 cut(s)	600
BseRI	GAGGAG	2 cut(s)	103, 106
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	6 cut(s)	170, 411, 414, 469, 549, 592
BseYI	CCCAGC	1 cut(s)	655
Bsh1236I	CGCG	3 cut(s)	63, 180, 218
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	232, 439, 704
BshNI	GGYRCC	1 cut(s)	731
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	615
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	3 cut(s)	375, 615, 692
BsmAI	GTCTC	3 cut(s)	65, 135, 168
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	232, 439, 704
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	2 cut(s)	225, 471
Bsp143I	GATC	5 cut(s)	11, 22, 239, 271, 496
BspANI	GGCC	3 cut(s)	232, 439, 704
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 180, 218
BspLI	GGNNCC	3 cut(s)	154, 222, 733
BspPI	GGATC	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	731
BspTNI	GGTCTC	2 cut(s)	65, 168
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	3 cut(s)	178, 216, 459
BssMI	GATC	5 cut(s)	11, 22, 239, 271, 496
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	266, 556
Bst6I	CTCTTC	1 cut(s)	500
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	744
BstC8I	GCNNGC	2 cut(s)	38, 213
BstDEI	CTNAG	2 cut(s)	420, 751
BstDSI	CCRYGG	2 cut(s)	178, 216
BstF5I	GGATG	2 cut(s)	200, 624
BstFNI	CGCG	3 cut(s)	63, 180, 218
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	14, 25, 242, 274, 499
BstMAI	GTCTC	3 cut(s)	65, 135, 168
BstMBI	GATC	5 cut(s)	11, 22, 239, 271, 496
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 229, 430, 433, 436, 577, 744
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	227, 614
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	3 cut(s)	63, 180, 218
BstV1I	GCAGC	6 cut(s)	170, 411, 414, 469, 549, 592
BstV2I	GAAGAC	2 cut(s)	635, 688
BstX2I	RGATCY	3 cut(s)	11, 239, 271
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	3 cut(s)	11, 239, 271
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	232, 439, 704
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	178, 216
BtrI	CACGTC	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	200, 624
BtsIMutI	CAGTG	2 cut(s)	561, 607
Cac8I	GCNNGC	2 cut(s)	38, 213
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	231, 378, 438
Cfr42I	CCGCGG	2 cut(s)	181, 219
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	2 cut(s)	552, 732
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	2 cut(s)	166, 301
CviQI	GTAC	2 cut(s)	552, 732
DdeI	CTNAG	2 cut(s)	420, 751
DpnI	GATC	5 cut(s)	13, 24, 241, 273, 498
DpnII	GATC	5 cut(s)	11, 22, 239, 271, 496
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	65, 168
Eco47I	GGWCC	1 cut(s)	378
Eco72I	CACGTG	1 cut(s)	744
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	2 cut(s)	169, 304
FaiI	YATR	6 cut(s)	167, 258, 302, 327, 677, 758
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	2 cut(s)	165, 300
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	2 cut(s)	187, 631
FriOI	GRGCYC	1 cut(s)	225
FspBI	CTAG	2 cut(s)	542, 549
GlaI	GCGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	232, 439, 704
HapII	CCGG	1 cut(s)	615
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	169, 304
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	339, 696
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	2 cut(s)	500, 676
Hpy166II	GTNNAC	3 cut(s)	133, 338, 469
Hpy188I	TCNGA	6 cut(s)	16, 59, 79, 121, 239, 276
Hpy188III	TCNNGA	2 cut(s)	156, 689
Hpy8I	GTNNAC	3 cut(s)	133, 338, 469
Hpy99I	CGWCG	7 cut(s)	63, 68, 131, 134, 137, 197, 266
HpyAV	CCTTC	4 cut(s)	74, 131, 350, 383
HpyCH4III	ACNGT	2 cut(s)	266, 556
HpyCH4IV	ACGT	3 cut(s)	129, 334, 743
HpyCH4V	TGCA	4 cut(s)	186, 310, 469, 747
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 229, 430, 433, 436, 577, 744
HpyF3I	CTNAG	2 cut(s)	420, 751
HpySE526I	ACGT	3 cut(s)	129, 334, 743
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	169, 304
HspAI	GCGC	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	735
Ksp22I	TGATCA	1 cut(s)	496
KspI	CCGCGG	2 cut(s)	181, 219
Kzo9I	GATC	5 cut(s)	11, 22, 239, 271, 496
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	3 cut(s)	158, 220, 743
LpnPI	CCDG	8 cut(s)	169, 214, 241, 471, 613, 628, 641, 748
Lsp1109I	GCAGC	6 cut(s)	170, 411, 414, 469, 549, 592
LweI	GCATC	3 cut(s)	102, 303, 756
MaeI	CTAG	2 cut(s)	542, 549
MaeII	ACGT	3 cut(s)	129, 334, 743
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	5 cut(s)	13, 24, 241, 273, 498
MboI	GATC	5 cut(s)	11, 22, 239, 271, 496
MboII	GAAGA	7 cut(s)	88, 328, 517, 572, 637, 640, 693
MflI	RGATCY	3 cut(s)	11, 239, 271
MhlI	GDGCHC	2 cut(s)	225, 471
MluCI	AATT	3 cut(s)	305, 371, 594
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	82, 144
MslI	CAYNNNNRTG	3 cut(s)	299, 474, 617
MspA1I	CMGCKG	2 cut(s)	180, 218
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	2 cut(s)	229, 616
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	3 cut(s)	63, 180, 218
MwoI	GCNNNNNNNGC	7 cut(s)	33, 229, 430, 433, 436, 577, 744
NciI	CCSGG	1 cut(s)	616
NdeII	GATC	5 cut(s)	11, 22, 239, 271, 496
NlaIII	CATG	2 cut(s)	169, 304
NlaIV	GGNNCC	3 cut(s)	154, 222, 733
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	488
OliI	CACNNNNGTG	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 169, 348
PfeI	GAWTC	1 cut(s)	696
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	333
PmaCI	CACGTG	1 cut(s)	744
PmlI	CACGTG	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	333
Ppu21I	YACGTR	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	3 cut(s)	154, 222, 733
PspPI	GGNCC	3 cut(s)	231, 378, 438
PsuI	RGATCY	3 cut(s)	11, 239, 271
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	553, 733
RsaNI	GTAC	2 cut(s)	552, 732
RseI	CAYNNNNRTG	3 cut(s)	299, 474, 617
SacII	CCGCGG	2 cut(s)	181, 219
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	500
Sau3AI	GATC	5 cut(s)	11, 22, 239, 271, 496
Sau96I	GGNCC	3 cut(s)	231, 378, 438
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	2 cut(s)	229, 616
SduI	GDGCHC	2 cut(s)	225, 471
SfaNI	GCATC	3 cut(s)	102, 303, 756
Sfr303I	CCGCGG	2 cut(s)	181, 219
SgrBI	CCGCGG	2 cut(s)	181, 219
SgrDI	CGTCGACG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	3 cut(s)	299, 474, 617
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	3 cut(s)	305, 371, 594
SspMI	CTAG	2 cut(s)	542, 549
StyD4I	CCNGG	2 cut(s)	227, 614
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	266, 556
TaiI	ACGT	3 cut(s)	132, 337, 746
TaqI	TCGA	3 cut(s)	21, 132, 648
TasI	AATT	3 cut(s)	305, 371, 594
TatI	WGTACW	1 cut(s)	551
TauI	GCSGC	8 cut(s)	153, 183, 218, 433, 436, 439, 608, 611
TfiI	GAWTC	1 cut(s)	696
TscAI	CASTG	2 cut(s)	561, 607
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	6 cut(s)	183, 424, 427, 482, 537, 580
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	4 cut(s)	189, 317, 329, 402
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	561, 607
VneI	GTGCAC	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	2 cut(s)	542, 549
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.