Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

32394371 .. 32395539

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG185200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGATTTGAGGTCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGAAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCTCTGACCACGACGACGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGTCGTTTCATCCACCAAGCTCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATCGGGGAGTTCGAGAAACACACAAAGGGCATCGGCATGAAATTGCTGATGAAGATGGGCTATAACGGGGGCGGACTCGGCAGAAACGAGGAAGGTATTGTGAGCCCAATTGAAGCCGAAATGAGGCCTAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGGCTAAGCTGCGGCGGCGGACCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGGTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGACACCAGTACAGTGGAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCGGCCACCGGGATGGGGAAGAAGACGAGTACAAAAGGTGCCGATTTGCTGGAAAAGTTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATCTGAGTTTGAAAGACAACAGCTACAGGTGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

258

Amino Acids

28.27

Weight (kDa)

9.55

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	97 - 138	2e-15	G-patch domain
G-patch_2	PF12656	100 - 141	4.7e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	659
AccII	CGCG	3 cut(s)	63, 174, 623
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	624, 717
AfaI	GTAC	2 cut(s)	565, 652
AfiI	CCNNNNNNNGG	3 cut(s)	390, 636, 707
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	380, 742
AleI	CACNNNNGTG	1 cut(s)	486
AluBI	AGCT	5 cut(s)	205, 229, 439, 753, 770
AluI	AGCT	5 cut(s)	205, 229, 439, 753, 770
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	3 cut(s)	65, 129, 162
Alw44I	GTGCAC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	392, 624, 717
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	4 cut(s)	177, 439, 549, 592
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	450
AsuC2I	CCSGG	1 cut(s)	631
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	374
BbsI	GAAGAC	2 cut(s)	650, 703
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	4 cut(s)	164, 426, 561, 604
BccI	CCATC	4 cut(s)	316, 628, 676, 701
BceAI	ACGGC	4 cut(s)	157, 170, 194, 218
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	631
BcoDI	GTCTC	3 cut(s)	65, 129, 162
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	754
BglI	GCCNNNNNGGC	1 cut(s)	623
BlpI	GCTNAGC	1 cut(s)	435
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	2 cut(s)	148, 661
BmrFI	CCNGG	1 cut(s)	631
BmsI	GCATC	3 cut(s)	102, 306, 771
BpiI	GAAGAC	2 cut(s)	650, 703
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpmI	CTGGAG	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	631
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	65, 162
BsaJI	CCNNGG	3 cut(s)	172, 471, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 636, 707
Bse1I	ACTGG	2 cut(s)	561, 612
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	172, 471, 621
BseGI	GGATG	3 cut(s)	194, 218, 639
BseLI	CCNNNNNNNGG	3 cut(s)	390, 636, 707
BseMII	CTCAG	1 cut(s)	725
BseNI	ACTGG	2 cut(s)	561, 612
BseRI	GAGGAG	2 cut(s)	103, 106
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	4 cut(s)	164, 426, 561, 604
Bsh1236I	CGCG	3 cut(s)	63, 174, 623
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	394, 626, 719
BshNI	GGYRCC	1 cut(s)	659
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	630
BslI	CCNNNNNNNGG	3 cut(s)	390, 636, 707
BsmAI	GTCTC	3 cut(s)	65, 129, 162
BsnI	GGCC	3 cut(s)	394, 626, 719
Bso31I	GGTCTC	2 cut(s)	65, 162
Bsp1286I	GDGCHC	2 cut(s)	374, 483
Bsp143I	GATC	3 cut(s)	22, 259, 508
Bsp1720I	GCTNAGC	1 cut(s)	435
BspANI	GGCC	3 cut(s)	394, 626, 719
BspCNI	CTCAG	1 cut(s)	726
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 174, 623
BspLI	GGNNCC	2 cut(s)	148, 661
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	659
BspTNI	GGTCTC	2 cut(s)	65, 162
BsrI	ACTGG	2 cut(s)	561, 612
BssECI	CCNNGG	3 cut(s)	172, 471, 621
BssMI	GATC	3 cut(s)	22, 259, 508
BssT1I	CCWWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	254, 568
Bst6I	CTCTTC	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	38, 207, 231
BstDEI	CTNAG	3 cut(s)	435, 734, 766
BstDSI	CCRYGG	2 cut(s)	172, 621
BstF5I	GGATG	3 cut(s)	194, 218, 639
BstFNI	CGCG	3 cut(s)	63, 174, 623
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	25, 262, 511
BstMAI	GTCTC	3 cut(s)	65, 129, 162
BstMBI	GATC	3 cut(s)	22, 259, 508
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 345, 445, 589, 623, 759
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	1 cut(s)	754
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	3 cut(s)	63, 174, 623
BstV1I	GCAGC	4 cut(s)	164, 426, 561, 604
BstV2I	GAAGAC	2 cut(s)	650, 703
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	2 cut(s)	568, 634
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	394, 626, 719
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	172, 621
BtsCI	GGATG	3 cut(s)	194, 218, 639
BtsIMutI	CAGTG	2 cut(s)	573, 619
Cac8I	GCNNGC	3 cut(s)	38, 207, 231
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	450
Cfr42I	CCGCGG	2 cut(s)	175, 624
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	2 cut(s)	564, 651
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	2 cut(s)	160, 304
CviQI	GTAC	2 cut(s)	564, 651
DdeI	CTNAG	3 cut(s)	435, 734, 766
DpnI	GATC	3 cut(s)	24, 261, 510
DpnII	GATC	3 cut(s)	22, 259, 508
EaeI	YGGCCR	2 cut(s)	624, 717
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
EciI	GGCGGA	2 cut(s)	354, 463
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	374
Eco31I	GGTCTC	2 cut(s)	65, 162
Eco47I	GGWCC	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	2 cut(s)	163, 307
FaiI	YATR	6 cut(s)	161, 246, 305, 330, 692, 773
FatI	CATG	2 cut(s)	159, 303
FbaI	TGATCA	1 cut(s)	508
FokI	GGATG	3 cut(s)	181, 205, 646
FriOI	GRGCYC	1 cut(s)	374
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	3 cut(s)	394, 626, 719
HapII	CCGG	1 cut(s)	630
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	163, 307
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	342, 711, 730
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	5 cut(s)	16, 59, 121, 264, 735
Hpy188III	TCNNGA	3 cut(s)	150, 280, 704
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	7 cut(s)	63, 68, 131, 134, 191, 215, 254
HpyAV	CCTTC	2 cut(s)	353, 398
HpyCH4III	ACNGT	2 cut(s)	254, 568
HpyCH4V	TGCA	3 cut(s)	180, 481, 762
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 345, 445, 589, 623, 759
HpyF3I	CTNAG	3 cut(s)	435, 734, 766
Hsp92II	CATG	2 cut(s)	163, 307
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	508
KspI	CCGCGG	2 cut(s)	175, 624
Kzo9I	GATC	3 cut(s)	22, 259, 508
LguI	GCTCTTC	1 cut(s)	512
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	7 cut(s)	163, 480, 574, 625, 643, 656, 742
Lsp1109I	GCAGC	4 cut(s)	164, 426, 561, 604
LweI	GCATC	3 cut(s)	102, 306, 771
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	3 cut(s)	24, 261, 510
MboI	GATC	3 cut(s)	22, 259, 508
MboII	GAAGA	7 cut(s)	88, 331, 529, 584, 652, 655, 708
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	374, 483
MluCI	AATT	3 cut(s)	308, 375, 606
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	82
MslI	CAYNNNNRTG	3 cut(s)	302, 486, 632
MspA1I	CMGCKG	2 cut(s)	174, 623
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	631
MunI	CAATTG	1 cut(s)	375
MvnI	CGCG	3 cut(s)	63, 174, 623
MwoI	GCNNNNNNNGC	6 cut(s)	33, 345, 445, 589, 623, 759
NciI	CCSGG	1 cut(s)	631
NdeII	GATC	3 cut(s)	22, 259, 508
NlaIII	CATG	2 cut(s)	163, 307
NlaIV	GGNNCC	2 cut(s)	148, 661
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	500
OliI	CACNNNNGTG	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	3 cut(s)	163, 276, 351
PfeI	GAWTC	2 cut(s)	711, 730
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	148, 661
PspPI	GGNCC	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	259
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	565, 652
RsaNI	GTAC	2 cut(s)	564, 651
RseI	CAYNNNNRTG	3 cut(s)	302, 486, 632
SacII	CCGCGG	2 cut(s)	175, 624
SapI	GCTCTTC	1 cut(s)	512
Sau3AI	GATC	3 cut(s)	22, 259, 508
Sau96I	GGNCC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	2 cut(s)	374, 483
SfaNI	GCATC	3 cut(s)	102, 306, 771
SfcI	CTRYAG	1 cut(s)	754
Sfr303I	CCGCGG	2 cut(s)	175, 624
SgrBI	CCGCGG	2 cut(s)	175, 624
SinI	GGWCC	1 cut(s)	450
SmiMI	CAYNNNNRTG	3 cut(s)	302, 486, 632
Sse9I	AATT	3 cut(s)	308, 375, 606
SseBI	AGGCCT	1 cut(s)	394
SspMI	CTAG	1 cut(s)	554
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	254, 568
TaqI	TCGA	3 cut(s)	21, 77, 279
TasI	AATT	3 cut(s)	308, 375, 606
TatI	WGTACW	2 cut(s)	563, 650
TauI	GCSGC	7 cut(s)	147, 177, 445, 448, 620, 623, 626
TfiI	GAWTC	2 cut(s)	711, 730
TscAI	CASTG	2 cut(s)	573, 619
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	4 cut(s)	177, 439, 549, 592
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	5 cut(s)	183, 207, 320, 332, 417
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	573, 619
VneI	GTGCAC	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	450
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.