Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

39038174 .. 39038898

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGGCGAGACCGCGGCTGCTACGCCGTCGTTTCATCCACCAAGCTCGCCGTGAAGCCCACCAGACCCATCAGGTCCGCCGTGAAACCCTATGAGGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAGGGGGATCGGCATGAAATTGCTGATGAAGATGGGCTATAACGGACGCGGACTCGGCAGAAACGAGGAAGGTATTGTGAGCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGTCCCACATCGTTTGTGAAAGCCAAGGCGGTGCAGAAAAGTGTGGGTAATGGTGACAAAGATCACAAGAAGACCAAAACAGAAATAGCCAAAAAACCAAGCAGCCTAAACACTAGTACAGTGGAAGGACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTACAAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACCTTGAGAATTTGAGTTTGAAAGATACAACCTCCAGGTGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

204

Amino Acids

22.26

Weight (kDa)

9.69

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	46 - 87	3.3e-16	G-patch domain
G-patch_2	PF12656	49 - 90	3.2e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	15, 186
AciI	CCGC	8 cut(s)	13, 15, 78, 186, 289, 292, 323, 465
AclWI	GGATC	2 cut(s)	114, 152
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	568
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	2 cut(s)	412, 490
AfiI	CCNNNNNNNGG	3 cut(s)	237, 474, 545
AgsI	TTSAA	2 cut(s)	227, 580
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	3 cut(s)	46, 286, 608
AluI	AGCT	3 cut(s)	46, 286, 608
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	2 cut(s)	114, 152
AoxI	GGCC	2 cut(s)	239, 555
ApeKI	GCWGC	4 cut(s)	18, 286, 396, 439
ApoI	RAATTY	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	75, 240
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	359, 529
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	3 cut(s)	371, 488, 541
BbvI	GCAGC	4 cut(s)	5, 273, 408, 451
BccI	CCATC	5 cut(s)	77, 163, 466, 514, 539
BceAI	ACGGC	3 cut(s)	11, 35, 65
BciT130I	CCWGG	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
BlsI	GCNGC	8 cut(s)	17, 20, 288, 291, 294, 398, 441, 466
Bme1390I	CCNGG	2 cut(s)	469, 595
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 240
BmrFI	CCNGG	2 cut(s)	469, 595
BmsI	GCATC	1 cut(s)	609
BpiI	GAAGAC	3 cut(s)	371, 488, 541
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	2 cut(s)	13, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 474, 545
Bse1I	ACTGG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	13, 318
BseGI	GGATG	2 cut(s)	35, 477
BseLI	CCNNNNNNNGG	3 cut(s)	237, 474, 545
BseNI	ACTGG	1 cut(s)	459
BseXI	GCAGC	4 cut(s)	5, 273, 408, 451
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	15, 186
BshFI	GGCC	2 cut(s)	241, 557
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	282, 292
BslI	CCNNNNNNNGG	3 cut(s)	237, 474, 545
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	282, 292
BsnI	GGCC	2 cut(s)	241, 557
Bso31I	GGTCTC	1 cut(s)	3
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	106, 144, 355
BspACI	CCGC	8 cut(s)	13, 15, 78, 186, 289, 292, 323, 465
BspANI	GGCC	2 cut(s)	241, 557
BspFNI	CGCG	2 cut(s)	15, 186
BspPI	GGATC	2 cut(s)	114, 152
BspTNI	GGTCTC	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	2 cut(s)	13, 318
BssMI	GATC	3 cut(s)	106, 144, 355
BssNI	GRCGYC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	2 cut(s)	101, 415
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	282, 604
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	35, 477
BstFNI	CGCG	2 cut(s)	15, 186
BstKTI	GATC	3 cut(s)	109, 147, 358
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	3 cut(s)	106, 144, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 292, 436
BstNI	CCWGG	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	467, 593
BstUI	CGCG	2 cut(s)	15, 186
BstV1I	GCAGC	4 cut(s)	5, 273, 408, 451
BstV2I	GAAGAC	3 cut(s)	371, 488, 541
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	241, 557
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	35, 477
BtsIMutI	CAGTG	2 cut(s)	420, 466
Cac8I	GCNNGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	75, 240
Cfr42I	CCGCGG	1 cut(s)	16
CseI	GACGC	2 cut(s)	192, 284
Csp6I	GTAC	2 cut(s)	411, 489
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	2 cut(s)	411, 489
DdeI	CTNAG	2 cut(s)	282, 604
DpnI	GATC	3 cut(s)	108, 146, 357
DpnII	GATC	3 cut(s)	106, 144, 355
EaeI	YGGCCR	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	154
FaiI	YATR	5 cut(s)	93, 152, 177, 530, 611
FaqI	GGGAC	2 cut(s)	282, 292
FatI	CATG	1 cut(s)	150
Fnu4HI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
FokI	GGATG	2 cut(s)	22, 484
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
GsuI	CTGGAG	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	241, 557
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	2 cut(s)	192, 284
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	2 cut(s)	189, 549
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	2 cut(s)	359, 529
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	127, 542
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	200, 245, 413
HpyCH4III	ACNGT	2 cut(s)	101, 415
HpyCH4V	TGCA	2 cut(s)	328, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 292, 436
HpyF3I	CTNAG	2 cut(s)	282, 604
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	154
KspI	CCGCGG	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	106, 144, 355
LpnPI	CCDG	7 cut(s)	58, 76, 472, 481, 494, 580, 607
Lsp1109I	GCAGC	4 cut(s)	5, 273, 408, 451
LweI	GCATC	1 cut(s)	609
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	3 cut(s)	108, 146, 357
MboI	GATC	3 cut(s)	106, 144, 355
MboII	GAAGA	5 cut(s)	178, 376, 490, 493, 546
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	5 cut(s)	155, 222, 233, 453, 568
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	7 cut(s)	88, 196, 231, 268, 442, 549, 601
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	469, 595
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	595
MvnI	CGCG	2 cut(s)	15, 186
MwoI	GCNNNNNNNGC	3 cut(s)	192, 292, 436
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	106, 144, 355
NlaIII	CATG	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	549
PkrI	GCNGC	8 cut(s)	17, 20, 288, 291, 294, 398, 441, 466
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspPI	GGNCC	2 cut(s)	75, 240
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	2 cut(s)	412, 490
RsaNI	GTAC	2 cut(s)	411, 489
SacII	CCGCGG	1 cut(s)	16
SatI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
Sau3AI	GATC	3 cut(s)	106, 144, 355
Sau96I	GGNCC	2 cut(s)	75, 240
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	469, 595
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	609
Sfr303I	CCGCGG	1 cut(s)	16
SgrBI	CCGCGG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	5 cut(s)	155, 222, 233, 453, 568
SsiI	CCGC	8 cut(s)	13, 15, 78, 186, 289, 292, 323, 465
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	467, 593
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	101, 415
TaqI	TCGA	2 cut(s)	126, 501
TasI	AATT	5 cut(s)	155, 222, 233, 453, 568
TatI	WGTACW	2 cut(s)	410, 488
TauI	GCSGC	4 cut(s)	18, 292, 295, 467
TfiI	GAWTC	1 cut(s)	549
TscAI	CASTG	2 cut(s)	420, 466
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	4 cut(s)	18, 286, 396, 439
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	24, 167, 179, 264
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	420, 466
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	568
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.